UHGV-0001572 (vOTU-105257)

Viral Genome: UHGV-0001572

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0001572
vOTU ID	vOTU-105257
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_13_1776__NODE_1300_length_65513_cov_20.296060_1
Associated BioSample	SAMEA4766035
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.97 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.39
Jumbo phage	No

Genome content
Genome length (bp)	29,045
GC content	57.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	95%
Average CDS length (bps)	642.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0001572_2	phrog_31229	45.8	0.00000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0001572_2	562981.HMPREF0428_01861	53.1	0.00000055	N/A	N/A
KOfam	UHGV-0001572_4	K18830	66.9	3.6e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0001572_4	phrog_4	53.9	0.0000000000000047	transcriptional repressor	transcription regulation
UniRef90	UHGV-0001572_4	UniRef90_A0A3A9BAB6	139.0	2.5e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0001572_4	445972.ANACOL_03315	137.0	2.85999e-40	N/A	N/A
Pfam	UHGV-0001572_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0001572_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0001572_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001572_10	PF19607	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_13	phrog_253	98.2	8.9e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001572_13	UniRef90_A0A1C5N4H2	161.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0001572_13	748224.HMPREF9436_03356	113.0	1.19e-29	Siphovirus Gp157	N/A
Pfam	UHGV-0001572_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0001572_13	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_14	phrog_2872	225.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001572_14	UniRef90_UPI0013D1CBB8	283.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0001572_14	1415774.U728_1119	276.0	0	AAA domain	N/A
structural_annotation	UHGV-0001572_14	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_15	phrog_18107	41.5	0.0000000000044	N/A	unknown function
UniRef90	UHGV-0001572_15	UniRef90_R6I207	77.4	0.000000000000037	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0001572_15	903814.ELI_1274	113.0	7.9e-29	N/A	N/A
structural_annotation	UHGV-0001572_15	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_16	phrog_8841	436.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001572_16	UniRef90_UPI00164DBC57	616.0	0	N/A	N/A
eggNOG-mapper	UHGV-0001572_16	1007096.BAGW01000023_gene149	596.0	0	N/A	N/A
Pfam	UHGV-0001572_16	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0001572_16	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0001572_16	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001572_16	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0001572_17	K17677	407.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0001572_17	phrog_16	237.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001572_17	UniRef90_A0A542ARN4	710.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0001572_17	742738.HMPREF9460_02499	679.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0001572_17	mREase_IV_00004	94.2	8.3e-28	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0001572_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0001572_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0001572_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0001572_17	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_18	phrog_824	135.6	1.8e-40	N/A	unknown function
UniRef90	UHGV-0001572_18	UniRef90_UPI00164D35CF	155.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0001572_18	397288.C806_00096	125.0	2.05e-35	VRR_NUC	N/A
Pfam	UHGV-0001572_18	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0001572_18	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0001572_21	K13655	42.7	0.000000000012	mqsA; HTH-type transcriptional regulator / antitoxin MqsA	N/A
Pfam	UHGV-0001572_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0001572_21	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0001572_21	PF13560,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001572_23	742738.HMPREF9460_02503	50.4	0.00000471	N/A	N/A
structural_annotation	UHGV-0001572_23	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0001572_24	K00571	155.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0001572_24	phrog_12862	196.9	0	N/A	unknown function
UniRef90	UHGV-0001572_24	UniRef90_A0A252F2H6	296.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0001572_24	1151292.QEW_0441	259.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0001572_24	MTase_II_00037	143.8	0	Type II methyltransferase	RM
Pfam	UHGV-0001572_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0001572_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0001572_24	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_25	phrog_2412	77.8	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0001572_25	742738.HMPREF9460_02504	104.0	3.39e-27	N/A	N/A
KOfam	UHGV-0001572_26	K06909	92.3	6.6e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0001572_26	phrog_2	107.4	2.4e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0001572_26	UniRef90_UPI0019684892	673.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0001572_26	1449050.JNLE01000003_gene3895	382.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0001572_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0001572_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0001572_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_27	phrog_533	276.4	0	portal protein	head and packaging
UniRef90	UHGV-0001572_27	UniRef90_A0A7G9WF85	447.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0001572_27	718252.FP2_06700	461.0	0	N/A	N/A
structural_annotation	UHGV-0001572_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_28	phrog_581	333.0	0	minor head protein	head and packaging
UniRef90	UHGV-0001572_28	UniRef90_A0A1Y4H5E2	586.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0001572_28	748224.HMPREF9436_03339	495.0	0	N/A	N/A
Pfam	UHGV-0001572_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0001572_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001572_28	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_30	phrog_194	95.8	4.6e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0001572_30	UniRef90_UPI001F39531D	90.5	1.45e-19	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0001572_30	1158614.I592_01120	84.7	4.94e-18	Phage minor structural protein GP20	N/A
Pfam	UHGV-0001572_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0001572_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_31	phrog_267	103.9	1.5e-30	major head protein	head and packaging
UniRef90	UHGV-0001572_31	UniRef90_A0A4P8IA69	377.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0001572_31	748224.HMPREF9436_03335	444.0	0	N/A	N/A
structural_annotation	UHGV-0001572_31	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_32	phrog_541	60.1	3.9e-17	head-tail adaptor	connector
Pfam	UHGV-0001572_33	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0001572_33	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_34	phrog_556	104.9	4.8e-31	minor head protein	head and packaging
UniRef90	UHGV-0001572_34	UniRef90_UPI00189988A1	121.0	4.49e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0001572_34	663278.Ethha_0493	117.0	5.76e-32	Minor capsid protein	N/A
Pfam	UHGV-0001572_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0001572_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_35	phrog_3266	125.1	3.1e-37	tail completion	connector
UniRef90	UHGV-0001572_35	UniRef90_A0A355UZ60	119.0	1.3e-31	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0001572_35	658655.HMPREF0988_02556	106.0	1.79e-27	N/A	N/A
structural_annotation	UHGV-0001572_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_36	phrog_3099	150.7	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0001572_36	645991.Sgly_0346	159.0	0	N/A	N/A
structural_annotation	UHGV-0001572_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_37	phrog_11299	47.5	0.00000000000033	N/A	unknown function
structural_annotation	UHGV-0001572_37	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_38	phrog_706	128.7	3.9e-38	N/A	unknown function
UniRef90	UHGV-0001572_38	UniRef90_UPI000A26BF43	149.0	2.47049e-42	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0001572_38	645991.Sgly_0348	142.0	2.28e-40	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0001572_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0001572_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_39	phrog_1535	46.6	8.4e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0001572_39	1235802.C823_01087	217.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0001572_39	PF05802	N/A	N/A	Enterobacterial EspB protein	EspB
COG	UHGV-0001572_39	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0001572_39	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_40	phrog_1194	78.9	5.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0001572_40	877414.ATWA01000001_gene917	134.0	4.59e-39	N/A	N/A
structural_annotation	UHGV-0001572_40	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0001572_41	phrog_6616	116.2	1.6e-34	tail protein	tail
eggNOG-mapper	UHGV-0001572_41	1211844.CBLM010000023_gene978	97.8	3.77e-18	cellulase activity	N/A
COG	UHGV-0001572_41	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0001572_42	phrog_199	85.2	7.5e-25	holin	lysis
UniRef90	UHGV-0001572_42	UniRef90_UPI0019247BD1	176.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0001572_42	411459.RUMOBE_01714	165.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0001572_42	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0001572_42	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0001572_42	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0001572_42	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0001572_43	K07273	167.0	0	acm; lysozyme	N/A
PHROG	UHGV-0001572_43	phrog_291	141.8	4.19969e-42	endolysin	lysis
UniRef90	UHGV-0001572_43	UniRef90_A0A1C6KUB8	112.0	1.4e-24	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0001572_43	515622.bpr_I0544	131.0	1.21e-29	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0001572_43	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0001572_43	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0001572_43	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A