UHGV-0001662 (vOTU-135852)

Viral Genome: UHGV-0001662

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0001662
vOTU ID	vOTU-135852
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_13_1776__NODE_1293_length_65791_cov_18.765819_1
Associated BioSample	SAMEA4766035
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.39 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.38
Jumbo phage	No

Genome content
Genome length (bp)	23,818
GC content	41.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	96%
Average CDS length (bps)	846.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0001662_1	K07474	142.5	4.40008e-42	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0001662_1	phrog_51	156.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0001662_1	UniRef90_A0A415L5B5	296.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0001662_1	1298920.KI911353_gene4857	214.0	0	Terminase small subunit	N/A
Pfam	UHGV-0001662_1	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0001662_1	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0001662_1	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0001662_2	K06909	86.0	5.5e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0001662_2	phrog_10250	50.9	0.000000000000018	N/A	unknown function
UniRef90	UHGV-0001662_2	UniRef90_UPI0011DDB413	849.0	0	terminase	N/A
eggNOG-mapper	UHGV-0001662_2	742740.HMPREF9474_03500	682.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0001662_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0001662_2	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_3	phrog_533	268.8	0	portal protein	head and packaging
UniRef90	UHGV-0001662_3	UniRef90_UPI001C0F908C	830.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0001662_3	1117108.PAALTS15_13582	520.0	0	N/A	N/A
structural_annotation	UHGV-0001662_3	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_4	phrog_25639	122.3	1.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0001662_4	742740.HMPREF9474_03502	89.0	1.91e-22	N/A	N/A
PHROG	UHGV-0001662_5	phrog_581	240.4	0	minor head protein	head and packaging
UniRef90	UHGV-0001662_5	UniRef90_A0A414W2X3	801.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0001662_5	33035.JPJF01000093_gene2255	531.0	0	N/A	N/A
Pfam	UHGV-0001662_5	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0001662_5	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0001662_5	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0001662_5	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_7	phrog_194	169.8	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0001662_7	UniRef90_UPI001D02A5C9	285.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0001662_7	1262449.CP6013_3198	172.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0001662_7	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0001662_7	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_8	phrog_212	285.6	0	major head protein	head and packaging
UniRef90	UHGV-0001662_8	UniRef90_A0A416Q289	578.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0001662_8	1151292.QEW_2433	494.0	0	N/A	N/A
structural_annotation	UHGV-0001662_8	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_9	phrog_15682	64.1	1.6e-18	N/A	unknown function
UniRef90	UHGV-0001662_9	UniRef90_J5WK97	67.8	0.000000000000411	Rho termination factor, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0001662_9	469618.FVAG_01311	70.9	0.00000000000000849	N/A	N/A
PHROG	UHGV-0001662_10	phrog_541	92.9	2.8e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0001662_10	1298920.KI911353_gene4848	202.0	0	N/A	N/A
PHROG	UHGV-0001662_11	phrog_8710	148.8	1.12104e-44	N/A	unknown function
eggNOG-mapper	UHGV-0001662_11	742740.HMPREF9474_03508	159.0	0	N/A	N/A
structural_annotation	UHGV-0001662_11	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_12	phrog_556	54.1	0.0000000000000026	minor head protein	head and packaging
eggNOG-mapper	UHGV-0001662_12	742740.HMPREF9474_03509	180.0	0	N/A	N/A
PHROG	UHGV-0001662_13	phrog_2595	84.7	9.5e-25	head-tail connector protein	connector
UniRef90	UHGV-0001662_13	UniRef90_UPI001C0EB705	245.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0001662_13	483218.BACPEC_01150	132.0	4.12e-38	N/A	N/A
Pfam	UHGV-0001662_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0001662_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_14	phrog_820	111.1	7.1e-33	major tail protein	tail
eggNOG-mapper	UHGV-0001662_14	33035.JPJF01000093_gene2246	192.0	0	N/A	N/A
Pfam	UHGV-0001662_14	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
structural_annotation	UHGV-0001662_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_15	phrog_8300	82.0	5.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0001662_15	742740.HMPREF9474_03512	101.0	9.08e-27	N/A	N/A
structural_annotation	UHGV-0001662_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_16	phrog_8355	96.6	1e-28	N/A	unknown function
UniRef90	UHGV-0001662_16	UniRef90_UPI001F2CFAB2	144.0	5.47908e-43	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0001662_16	33035.JPJF01000093_gene2244	81.6	2.26e-19	N/A	N/A
structural_annotation	UHGV-0001662_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_17	phrog_1535	495.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0001662_17	UniRef90_A0A1C5RGR7	1471.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0001662_17	33035.JPJF01000093_gene2243	776.0	0	phage tail tape measure protein	N/A
COG	UHGV-0001662_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0001662_17	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_18	phrog_1194	71.7	9.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0001662_18	33035.JPJF01000093_gene2242	165.0	0	N/A	N/A
structural_annotation	UHGV-0001662_18	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0001662_19	K08131	50.7	0.0000000000000057	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0001662_19	phrog_6616	745.6	0	tail protein	tail
UniRef90	UHGV-0001662_19	UniRef90_A0A1C5RGI0	1833.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001662_19	476272.RUMHYD_01992	289.0	0	N/A	N/A
Pfam	UHGV-0001662_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0001662_19	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
structural_annotation	UHGV-0001662_19	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0001662_21	phrog_16164	133.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0001662_21	33035.JPJF01000093_gene2236	59.3	0.0000000542	N/A	N/A
structural_annotation	UHGV-0001662_21	PF10651,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001662_22	UniRef90_UPI001D075611	252.0	0	GDSL-type esterase/lipase family protein	N/A
PHROG	UHGV-0001662_23	phrog_2310	42.5	0.0000000000065	N/A	unknown function
KOfam	UHGV-0001662_24	K04763	56.6	5.5e-16	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0001662_24	phrog_1	49.0	0.00000000000011	integrase	integration and excision
UniRef90	UHGV-0001662_24	UniRef90_A0A412EKQ1	60.5	0.000000000122	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0001662_24	1035193.HMPREF9073_00357	58.2	0.00000000418	phage integrase family	N/A
Pfam	UHGV-0001662_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0001662_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0001662_26	phrog_199	79.5	3.3e-23	holin	lysis
UniRef90	UHGV-0001662_26	UniRef90_A0A414SEM5	273.0	0	Holin	N/A
eggNOG-mapper	UHGV-0001662_26	411462.DORLON_00766	211.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0001662_26	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0001662_26	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0001662_26	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0001662_27	K01447	94.9	1.2e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0001662_27	phrog_3088	179.5	0	amidase	lysis
UniRef90	UHGV-0001662_27	UniRef90_A0A414EG98	790.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0001662_27	411459.RUMOBE_00909	761.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0001662_27	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0001662_27	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0001662_27	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0001662_27	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0001662_27	PF01832,NF008758,NF009354,COG5632,COG4193	N/A	N/A	N/A	N/A