UHGV-0002283 (vOTU-114737)

Viral Genome: UHGV-0002283

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002283
vOTU ID	vOTU-114737
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_12_1633__NODE_1128_length_38061_cov_5.908725_1
Associated BioSample	SAMEA4765913
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.64 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9739
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.42
Jumbo phage	No

Genome content
Genome length (bp)	31,958
GC content	49.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	94%
Average CDS length (bps)	614.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0002283_1	K22300	57.7	2.6e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0002283_1	phrog_8	64.4	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002283_1	UniRef90_UPI001E627292	73.6	0.0000000000000791	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_1	1117108.PAALTS15_10030	62.0	0.000000000085	TRANSCRIPTIONal	N/A
Pfam	UHGV-0002283_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002283_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0002283_1	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_4	phrog_2232	175.2	0	N/A	unknown function
UniRef90	UHGV-0002283_4	UniRef90_UPI001CCCDE3F	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002283_4	357809.Cphy_2977	149.0	3.88006e-41	N/A	N/A
Pfam	UHGV-0002283_4	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
KOfam	UHGV-0002283_8	K01449	59.6	5e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0002283_8	phrog_18750	153.4	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0002283_8	UniRef90_A0A3D5TM41	214.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_8	1203606.HMPREF1526_01876	144.0	8.36001e-41	Cell wall hydrolase	N/A
Pfam	UHGV-0002283_8	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0002283_8	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0002283_8	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_10	phrog_22040	47.6	0.00000000000023	N/A	unknown function
structural_annotation	UHGV-0002283_10	PF07073,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_14	phrog_824	134.1	4.1e-40	N/A	unknown function
UniRef90	UHGV-0002283_14	UniRef90_A0A3D5TLJ2	316.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_14	1235792.C808_00075	135.0	5.3e-37	VRR_NUC	N/A
Pfam	UHGV-0002283_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0002283_14	PF08774,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_17	phrog_8470	320.1	0	N/A	unknown function
UniRef90	UHGV-0002283_17	UniRef90_A0A238ZSA1	218.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0002283_17	1117108.PAALTS15_13637	203.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0002283_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0002283_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_18	phrog_15609	144.1	8.89825e-43	N/A	unknown function
eggNOG-mapper	UHGV-0002283_18	1514668.JOOA01000001_gene225	69.3	0.000000000198	N/A	N/A
Pfam	UHGV-0002283_18	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-0002283_18	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_22	phrog_3136	130.4	6.1e-39	N/A	unknown function
UniRef90	UHGV-0002283_22	UniRef90_A0A3D0HBD2	124.0	3.02e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_22	394503.Ccel_3165	75.5	0.00000000000000185	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0002283_22	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0002283_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0002283_22	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
dbAPIS	UHGV-0002283_23	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0002283_24	phrog_24518	43.9	0.0000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0002283_24	1007096.BAGW01000031_gene121	70.5	0.00000000000161	N/A	N/A
PHROG	UHGV-0002283_25	phrog_3584	130.4	1.2e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002283_25	537013.CLOSTMETH_02141	78.2	0.00000000000000618	N/A	N/A
structural_annotation	UHGV-0002283_25	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_27	phrog_11237	77.5	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0002283_27	537013.CLOSTMETH_01096	58.9	0.00000000209	N/A	N/A
structural_annotation	UHGV-0002283_27	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0002283_28	K00571	161.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0002283_28	phrog_12862	165.6	0	N/A	unknown function
UniRef90	UHGV-0002283_28	UniRef90_UPI000A26DFF4	330.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0002283_28	1120998.AUFC01000030_gene2227	312.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0002283_28	MTase_II_00037	144.5	0	Type II methyltransferase	RM
Pfam	UHGV-0002283_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0002283_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0002283_28	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_29	phrog_12389	76.8	2.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0002283_29	1196322.A370_03932	62.4	0.000000000893	N/A	N/A
PHROG	UHGV-0002283_30	phrog_20533	57.0	3.1e-16	N/A	unknown function
UniRef90	UHGV-0002283_30	UniRef90_A0A7C6U4T3	158.0	0	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_30	1123058.KB894251_gene2369	75.9	0.0000000000000097	N/A	N/A
PHROG	UHGV-0002283_31	phrog_17390	43.9	0.0000000000018	N/A	unknown function
UniRef90	UHGV-0002283_31	UniRef90_UPI001E61FF52	79.7	2.19e-16	terminase small subunit	N/A
eggNOG-mapper	UHGV-0002283_31	1158614.I592_02434	67.4	0.0000000000022	Terminase small subunit	N/A
Pfam	UHGV-0002283_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-0002283_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0002283_32	K06909	390.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002283_32	phrog_3717	172.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0002283_32	UniRef90_R6I0M1	841.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0002283_32	203119.Cthe_2474	528.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0002283_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0002283_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0002283_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0002283_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002283_32	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_33	phrog_64	307.6	0	portal protein	head and packaging
UniRef90	UHGV-0002283_33	UniRef90_R6IBR5	1002.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0002283_33	97138.C820_00238	384.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0002283_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0002283_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_34	phrog_115	345.6	0	minor head protein	head and packaging
UniRef90	UHGV-0002283_34	UniRef90_A0A3D2QEP6	649.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_34	1209989.TepiRe1_1146	294.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0002283_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0002283_34	PF14424	N/A	N/A	The BURPS668_1122 family of deaminases	Toxin-deaminase
NCBIFam	UHGV-0002283_34	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0002283_34	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_36	phrog_194	151.3	5.60519e-45	head scaffolding protein	head and packaging
UniRef90	UHGV-0002283_36	UniRef90_UPI001651708C	124.0	6.11e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0002283_36	1196028.ALEF01000043_gene465	104.0	4.92e-25	Phage minor structural protein GP20	N/A
Pfam	UHGV-0002283_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0002283_37	phrog_283	291.0	0	major head protein	head and packaging
UniRef90	UHGV-0002283_37	UniRef90_UPI001896DBE2	407.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-0002283_37	1297617.JPJD01000059_gene2633	391.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0002283_37	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0002283_37	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_38	phrog_132	50.9	0.000000000000023	head-tail adaptor	connector
UniRef90	UHGV-0002283_38	UniRef90_R6I6I7	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002283_38	268407.PWYN_03015	49.7	0.00000463	N/A	N/A
structural_annotation	UHGV-0002283_39	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_40	phrog_5	102.2	5.5e-30	tail completion or Neck1 protein	connector
UniRef90	UHGV-0002283_40	UniRef90_R6IVT6	320.0	0	Bacteriophage protein PF04883 family	N/A
eggNOG-mapper	UHGV-0002283_40	1280692.AUJL01000025_gene2076	144.0	4.11982e-42	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0002283_40	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0002283_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0002283_40	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002283_41	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_42	phrog_158	63.2	5.8e-18	major tail protein	tail
UniRef90	UHGV-0002283_42	UniRef90_R6HYI8	281.0	0	Major tail protein putative	N/A
eggNOG-mapper	UHGV-0002283_42	1209989.TepiRe1_1157	85.5	2.33e-19	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0002283_42	PF16461	N/A	N/A	Lambda phage tail tube protein, TTP	Phage_TTP_12
structural_annotation	UHGV-0002283_42	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002283_43	UniRef90_UPI0012BCDD8A	60.5	0.00000000257	N/A	N/A
eggNOG-mapper	UHGV-0002283_43	1211844.CBLM010000016_gene1484	56.6	0.0000000225	N/A	N/A
structural_annotation	UHGV-0002283_43	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_44	phrog_1535	87.2	1.5e-25	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002283_44	645991.Sgly_0352	197.0	0	SLT domain	N/A
COG	UHGV-0002283_44	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0002283_45	phrog_23726	71.4	2.79993e-41	N/A	unknown function
UniRef90	UHGV-0002283_45	UniRef90_A0A0M1UTM9	122.0	8.1e-31	Cell surface domain protein	N/A
eggNOG-mapper	UHGV-0002283_45	428125.CLOLEP_01549	150.0	2.57e-40	cell wall binding repeat	N/A
COG	UHGV-0002283_45	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
PHROG	UHGV-0002283_46	phrog_1194	94.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-0002283_46	UniRef90_A0A0R1Q5P9	53.1	0.00000218	N/A	N/A
eggNOG-mapper	UHGV-0002283_46	1400520.LFAB_05290	58.2	0.0000000044	N/A	N/A
Pfam	UHGV-0002283_46	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0002283_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0002283_47	phrog_6616	615.0	0	tail protein	tail
UniRef90	UHGV-0002283_47	UniRef90_A0A0J1FXD9	145.0	1.24e-32	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002283_47	1289601.M1PSK1_9CAUD	59.7	0.00000296	N-acetylmuramoyl-L-alanine amidase activity	N/A
structural_annotation	UHGV-0002283_47	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002283_49	UniRef90_R6HYD9	77.8	0.000000000000304	Collagen triple helix repeat protein	N/A
structural_annotation	UHGV-0002283_49	PF10651,NF009453	N/A	N/A	N/A	N/A