UHGV-0002316 (vOTU-031496)

Viral Genome: UHGV-0002316

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002316
vOTU ID	vOTU-031496
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_18_2610__NODE_722_length_79143_cov_16.808603_1
Associated BioSample	SAMEA4766357
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.28
Jumbo phage	No

Genome content
Genome length (bp)	22,435
GC content	62.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	94%
Average CDS length (bps)	681.77
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0002316_1	K01356	128.1	9.9e-38	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0002316_1	phrog_4	137.7	9.49996e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-0002316_1	UniRef90_A0A173U4H9	414.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0002316_1	748224.HMPREF9436_01983	416.0	0	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0002316_1	retron_type_VI_hth_cluster2_1	45.2	0.0000000000023	N/A	Retron
Pfam	UHGV-0002316_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0002316_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0002316_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0002316_1	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_2	phrog_263	78.5	5.7e-23	holin	lysis
UniRef90	UHGV-0002316_2	UniRef90_A0A2A6ZGP9	124.0	2.2e-35	Phage holin	N/A
eggNOG-mapper	UHGV-0002316_2	748224.HMPREF9436_00409	115.0	1.19e-32	SPP1 phage holin	N/A
Pfam	UHGV-0002316_2	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0002316_2	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0002316_2	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_3	phrog_199	91.5	7.9e-27	holin	lysis
UniRef90	UHGV-0002316_3	UniRef90_A0A2A6ZGX7	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0002316_3	742740.HMPREF9474_02333	197.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0002316_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0002316_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0002316_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0002316_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0002316_4	K08640	99.1	7.6e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0002316_4	phrog_894	103.6	2.2e-30	endolysin	lysis
UniRef90	UHGV-0002316_4	UniRef90_A0A3E2TR57	227.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002316_4	748224.HMPREF9436_03320	214.0	0	Peptidase M15	N/A
Pfam	UHGV-0002316_4	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0002316_4	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002316_4	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_5	phrog_10993	148.3	4.34403e-44	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0002316_5	UniRef90_A0A2A6ZH37	157.0	1.69557e-43	N/A	N/A
eggNOG-mapper	UHGV-0002316_5	718252.FP2_16970	136.0	9.55e-35	N/A	N/A
Pfam	UHGV-0002316_5	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0002316_5	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_6	phrog_9534	230.7	0	head protein	head and packaging
UniRef90	UHGV-0002316_6	UniRef90_Q5L2K4	72.8	0.0000000000173	Phage-related protein	N/A
eggNOG-mapper	UHGV-0002316_6	748224.HMPREF9436_00702	268.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0002316_6	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_7	phrog_538	121.3	3.5e-36	minor tail protein	tail
eggNOG-mapper	UHGV-0002316_7	428125.CLOLEP_01424	63.9	0.0000000153	N/A	N/A
Pfam	UHGV-0002316_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0002316_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_8	phrog_33	46.6	0.00000000000074	distal tail protein Dit	tail
UniRef90	UHGV-0002316_8	UniRef90_A0A564T4N7	413.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0002316_8	748224.HMPREF9436_00700	397.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0002316_8	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_9	phrog_28775	277.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002316_9	748224.HMPREF9436_00699	999.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0002316_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_10	phrog_1633	45.1	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0002316_10	768726.HMPREF9178_1055	51.2	0.00000092	N/A	N/A
PHROG	UHGV-0002316_11	phrog_1526	55.2	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0002316_11	938278.CAJO01000051_gene781	63.9	0.0000000000031	N/A	N/A
PHROG	UHGV-0002316_12	phrog_117	174.3	0	major tail protein	tail
UniRef90	UHGV-0002316_12	UniRef90_E2ZGB2	281.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-0002316_12	748224.HMPREF9436_00696	281.0	0	domain, Protein	N/A
COG	UHGV-0002316_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002316_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_13	phrog_123	50.0	0.000000000000057	tail terminator	connector
eggNOG-mapper	UHGV-0002316_13	748224.HMPREF9436_00695	110.0	9.69e-30	N/A	N/A
structural_annotation	UHGV-0002316_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_14	phrog_387	58.5	1.1e-16	neck protein	connector
UniRef90	UHGV-0002316_14	UniRef90_A0A139NAV7	54.3	0.0000000582	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0002316_14	908337.HMPREF9257_0534	62.4	0.00000000000638	N/A	N/A
PHROG	UHGV-0002316_15	phrog_501	80.3	2.2e-23	head closure Hc1	connector
UniRef90	UHGV-0002316_15	UniRef90_R6CEU4	105.0	4.24e-27	N/A	N/A
eggNOG-mapper	UHGV-0002316_15	748224.HMPREF9436_00693	118.0	3.64e-33	N/A	N/A
structural_annotation	UHGV-0002316_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_16	phrog_137	111.3	4.7e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-0002316_16	UniRef90_A0A564SC88	195.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0002316_16	1121864.OMO_02154	164.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0002316_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0002316_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_18	phrog_32396	132.4	1.1e-39	N/A	unknown function
UniRef90	UHGV-0002316_18	UniRef90_A0A564SB39	538.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0002316_18	1321784.HMPREF1987_01073	367.0	0	Phage capsid family	N/A
Pfam	UHGV-0002316_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0002316_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0002316_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_19	phrog_233	63.1	4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0002316_19	UniRef90_A0A2S0L5H5	73.2	0.0000000000000802	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0002316_19	706433.HMPREF9430_01266	69.3	0.000000000000458	N/A	N/A
structural_annotation	UHGV-0002316_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_20	phrog_17688	314.5	0	N/A	unknown function
UniRef90	UHGV-0002316_20	UniRef90_A0A564SCG0	801.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0002316_20	936375.HMPREF1152_0677	632.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0002316_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0002316_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0002316_20	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_22	phrog_2494	254.4	0	minor head protein	head and packaging
UniRef90	UHGV-0002316_22	UniRef90_J1NLI0	198.0	0	Gp35 domain protein	N/A
eggNOG-mapper	UHGV-0002316_22	1280698.AUJS01000007_gene1034	199.0	0	cell adhesion	N/A
Pfam	UHGV-0002316_22	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0002316_22	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_23	phrog_104	289.5	0	portal protein	head and packaging
UniRef90	UHGV-0002316_23	UniRef90_A0A564SBV0	701.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0002316_23	665950.HMPREF1025_02537	559.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0002316_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_24	phrog_338	96.8	2.9e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002316_24	UniRef90_A0A564SBG0	183.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0002316_24	1280698.AUJS01000007_gene1032	170.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0002316_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0002316_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0002316_24	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_25	phrog_36	84.1	1.9e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002316_25	UniRef90_A0A3E2U224	218.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002316_25	748224.HMPREF9436_01463	115.0	2.67e-31	N/A	N/A
Pfam	UHGV-0002316_25	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0002316_25	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0002316_26	K02314	227.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0002316_26	phrog_19	214.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002316_26	UniRef90_A0A3E2U3E3	796.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0002316_26	411471.SUBVAR_05838	347.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0002316_26	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0002316_26	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0002316_26	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0002316_26	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_27	phrog_678	64.0	3.1e-18	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002316_27	UniRef90_A0A3E2U1Y3	505.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0002316_27	411471.SUBVAR_05835	75.1	0.000000000000604	Helix-turn-helix domain	N/A
Pfam	UHGV-0002316_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0002316_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0002316_27	PF05584,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0002316_28	K03111	142.9	3.39955e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002316_28	phrog_44	142.4	2.59941e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002316_28	UniRef90_A0A3E2U1Y5	212.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002316_28	748224.HMPREF9436_00638	207.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0002316_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0002316_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0002316_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0002316_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002316_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0002316_29	phrog_7566	69.9	3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0002316_29	411471.SUBVAR_05830	96.3	1.42e-24	N/A	N/A
PHROG	UHGV-0002316_30	phrog_72	54.8	0.0000000000000019	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002316_30	411471.SUBVAR_05829	132.0	8.25e-37	N/A	N/A
structural_annotation	UHGV-0002316_30	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002316_31	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A