UHGV-0002412 (vOTU-063927)

Viral Genome: UHGV-0002412

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002412
vOTU ID	vOTU-063927
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_D_14_1184__NODE_124_length_109446_cov_8.759466_1
Associated BioSample	SAMEA4765643
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.76 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9718
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.27
Jumbo phage	No

Genome content
Genome length (bp)	35,930
GC content	28.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	89%
Average CDS length (bps)	549.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002412_1	phrog_2329	62.6	5.1e-18	N/A	unknown function
UniRef90	UHGV-0002412_2	UniRef90_A0A1Q6LC62	434.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0002412_2	1121422.AUMW01000009_gene3264	115.0	6.06e-27	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0002412_2	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0002412_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0002412_2	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-0002412_2	PF03412,PF08239,NF040678,COG3807,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_4	phrog_2310	44.5	0.0000000000014	N/A	unknown function
PHROG	UHGV-0002412_5	phrog_5073	49.9	0.000000000000046	tail fiber protein	tail
eggNOG-mapper	UHGV-0002412_5	476272.RUMHYD_00002	65.5	0.0000000598	N/A	N/A
eggNOG-mapper	UHGV-0002412_7	767817.Desgi_3857	59.3	0.000000544	TIGRFAM intein N-terminal splicing region	N/A
Pfam	UHGV-0002412_7	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
NCBIFam	UHGV-0002412_7	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-0002412_7	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
PHROG	UHGV-0002412_9	phrog_13879	78.8	2.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0002412_9	1122919.KB905559_gene1344	76.6	0.00000000000788	N/A	N/A
structural_annotation	UHGV-0002412_9	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_10	phrog_1194	66.2	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0002412_10	1000588.HMPREF9965_1690	50.4	0.0000037	N/A	N/A
structural_annotation	UHGV-0002412_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_11	phrog_1535	130.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002412_11	1232449.BAHV02000010_gene2723	85.9	0.0000000000000506	domain protein	N/A
COG	UHGV-0002412_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002412_11	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_12	phrog_26308	70.4	2.4e-20	N/A	unknown function
UniRef90	UHGV-0002412_12	UniRef90_A0A1Q6JN93	108.0	7.24e-26	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002412_12	1042156.CXIVA_15870	95.9	8.75e-21	sh3 domain protein	N/A
COG	UHGV-0002412_12	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002412_12	PF11355,PF13828,MF_00791,TIGR02588,COG5633	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002412_13	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002412_14	445972.ANACOL_01851	85.5	4.41e-19	N/A	N/A
structural_annotation	UHGV-0002412_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002412_15	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002412_16	665956.HMPREF1032_03623	52.8	0.00000394	N/A	N/A
structural_annotation	UHGV-0002412_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002412_17	445972.ANACOL_01848	53.1	0.000000232	N/A	N/A
structural_annotation	UHGV-0002412_17	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002412_18	445972.ANACOL_01847	48.9	0.00000515	N/A	N/A
structural_annotation	UHGV-0002412_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_19	phrog_247	284.0	0	major head protein	head and packaging
UniRef90	UHGV-0002412_19	UniRef90_R7ITV5	719.0	0	Putative prophage Lp2 protein 40	N/A
eggNOG-mapper	UHGV-0002412_19	445335.CBN_1379	306.0	0	N/A	N/A
COG	UHGV-0002412_19	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0002412_19	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_20	phrog_172	87.7	1.8e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0002412_20	UniRef90_A0A3D1PKZ2	74.7	0.000000000000243	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0002412_20	1499683.CCFF01000014_gene3909	70.9	0.00000000000216	N/A	N/A
Pfam	UHGV-0002412_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0002412_20	PF14265	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0002412_21	cluster_73853	35.4	0.000000617	NA	N/A
PHROG	UHGV-0002412_24	phrog_64	222.3	0	portal protein	head and packaging
UniRef90	UHGV-0002412_24	UniRef90_R7IUE9	896.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0002412_24	665956.HMPREF1032_03614	244.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0002412_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0002412_24	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_25	phrog_30251	458.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0002412_25	UniRef90_R7ITA5	743.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0002412_25	546275.FUSPEROL_02030	471.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0002412_25	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0002412_25	COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_26	phrog_8148	110.3	6.9e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0002412_26	UniRef90_R7ITS8	132.0	2.49e-39	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0002412_26	469618.FVAG_00794	81.3	3.59e-17	TIGRFAM Phage	N/A
COG	UHGV-0002412_26	COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0002412_27	K07474	141.0	1.40004e-41	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0002412_27	phrog_51	149.9	1.26117e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0002412_27	UniRef90_R7ITW3	320.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0002412_27	469618.FVAG_01302	155.0	0	Terminase small subunit	N/A
Pfam	UHGV-0002412_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0002412_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0002412_27	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_31	phrog_248	43.0	0.0000000000048	transcriptional activator	transcription regulation
UniRef90	UHGV-0002412_31	UniRef90_UPI0013E9353F	84.7	1.54e-18	nitroreductase	N/A
eggNOG-mapper	UHGV-0002412_31	573061.Clocel_2449	59.3	0.00000000186	N/A	N/A
structural_annotation	UHGV-0002412_31	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_32	phrog_478	133.7	6.7e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0002412_32	UniRef90_A0A285PT53	132.0	2.95e-37	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0002412_32	1235792.C808_00058	134.0	7.88e-39	N/A	N/A
structural_annotation	UHGV-0002412_33	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_38	phrog_111	146.8	9.94922e-44	DNA methyltransferase	other
UniRef90	UHGV-0002412_38	UniRef90_A0A096XV35	181.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-0002412_38	1567011.A0A0A7RUD1_9VIRU	173.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0002412_38	oMTase_00015	190.2	0	orphan methyltransferase	RM
Pfam	UHGV-0002412_38	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0002412_38	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002412_40	PF15188	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_42	phrog_1123	55.0	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0002412_42	1560313.A0A0D3MSU0_9CAUD	63.5	0.0000000000065	N/A	N/A
structural_annotation	UHGV-0002412_42	PF02002,TIGR03433,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_43	phrog_2514	111.6	6.9e-33	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002412_43	UniRef90_A0A6H1ZB78	97.4	1.21e-21	Putative replication protein	N/A
eggNOG-mapper	UHGV-0002412_43	319225.Plut_0817	108.0	1.53e-26	N/A	N/A
structural_annotation	UHGV-0002412_43	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_44	phrog_7566	77.0	1.8e-22	N/A	unknown function
UniRef90	UHGV-0002412_44	UniRef90_A0A1V5HS54	68.9	0.000000000000333	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0002412_44	1118057.CAGX01000020_gene1648	54.3	0.0000000267	N/A	N/A
PHROG	UHGV-0002412_46	phrog_72	66.8	1.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002412_46	UniRef90_A0A8D9PDS2	102.0	3.82e-24	NinB protein	N/A
eggNOG-mapper	UHGV-0002412_46	445972.ANACOL_01825	97.1	7.27e-23	N/A	N/A
structural_annotation	UHGV-0002412_46	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002412_47	UniRef90_B0PAM4	114.0	5.63e-29	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0002412_47	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_48	phrog_659	41.2	0.000000000018	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002412_48	UniRef90_A0A858BRQ4	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002412_48	33035.JPJF01000135_gene5082	175.0	0	N/A	N/A
Pfam	UHGV-0002412_48	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0002412_48	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002412_54	UniRef90_A0A2C6M758	59.7	0.000000000283	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0002412_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002412_54	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0002412_55	K07729	63.8	3.4e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0002412_55	phrog_8	72.5	7.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002412_55	UniRef90_R7ITV8	82.4	4.1e-18	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0002412_55	755731.Clo1100_0530	74.7	7.39e-16	transcriptional regulator	N/A
PADLOC	UHGV-0002412_55	retron_type_VI_hth_cluster2_1	43.4	0.0000000000071	N/A	Retron
Pfam	UHGV-0002412_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002412_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002412_55	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0002412_56	phrog_87	62.4	6.8e-18	metallo-protease	other
UniRef90	UHGV-0002412_56	UniRef90_A0A2J6XX50	75.9	0.00000000000000321	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002412_56	663278.Ethha_2392	50.8	0.00000199	N/A	N/A
Pfam	UHGV-0002412_56	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0002412_56	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0002412_56	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0002412_57	K14059	256.8	0	int; integrase	N/A
PHROG	UHGV-0002412_57	phrog_1	208.9	0	integrase	integration and excision
UniRef90	UHGV-0002412_57	UniRef90_A0A2U1K548	201.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0002412_57	649639.Bcell_2753	191.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0002412_57	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0002412_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0002412_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0002412_57	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A