UHGV-0002697 (vOTU-018461)

Viral Genome: UHGV-0002697

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002697
vOTU ID	vOTU-018461
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_224_length_158995_cov_8.481437_1
Associated BioSample	SAMEA4766013
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.16
Jumbo phage	No

Genome content
Genome length (bp)	33,644
GC content	27.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	90%
Average CDS length (bps)	551.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0002697_1	K01447	117.9	1.3e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0002697_1	phrog_1493	132.3	4.4e-39	endolysin	lysis
UniRef90	UHGV-0002697_1	UniRef90_R5YUL1	450.0	0	N-acetylmuramoyl-L-alanine amidase cwlL (Cellwall hydrolase) (Autolysin)	N/A
eggNOG-mapper	UHGV-0002697_1	1443122.Z958_08055	174.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0002697_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0002697_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0002697_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0002697_1	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_2	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_4	phrog_2310	53.4	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0002697_4	632245.CLP_2682	51.2	0.0000000671	N/A	N/A
PHROG	UHGV-0002697_6	phrog_5073	51.1	0.00000000000002	tail fiber protein	tail
eggNOG-mapper	UHGV-0002697_8	509191.AEDB02000102_gene3725	68.6	0.00000000039	RHS repeat-associated core domain	N/A
Pfam	UHGV-0002697_8	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
NCBIFam	UHGV-0002697_8	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-0002697_8	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
PHROG	UHGV-0002697_10	phrog_13879	82.0	3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0002697_10	1122919.KB905559_gene1344	73.6	0.0000000000745	N/A	N/A
structural_annotation	UHGV-0002697_10	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_11	phrog_1194	67.7	1.5e-19	N/A	unknown function
structural_annotation	UHGV-0002697_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0002697_12	K20478	59.7	2.6e-18	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0002697_12	phrog_1535	133.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002697_12	1232449.BAHV02000010_gene2723	87.0	0.0000000000000237	domain protein	N/A
COG	UHGV-0002697_12	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_12	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_13	phrog_26308	77.0	2.6e-22	N/A	unknown function
UniRef90	UHGV-0002697_13	UniRef90_A0A1Q6JN93	110.0	1.32e-26	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002697_13	1042156.CXIVA_15870	99.8	3.34e-22	sh3 domain protein	N/A
COG	UHGV-0002697_13	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_13	PF11355,PF13828,MF_00791,TIGR02588,COG5633	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_14	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002697_15	445972.ANACOL_01851	85.9	3.13e-19	N/A	N/A
structural_annotation	UHGV-0002697_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_16	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_17	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002697_18	445972.ANACOL_01848	55.5	0.00000003	N/A	N/A
structural_annotation	UHGV-0002697_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002697_20	UniRef90_A0A3D1PN29	656.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0002697_20	86416.Clopa_0341	115.0	1.76e-25	Phage capsid family	N/A
Pfam	UHGV-0002697_20	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
COG	UHGV-0002697_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0002697_20	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_21	phrog_172	108.8	6.1e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-0002697_21	UniRef90_A0A3D1PKZ2	298.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0002697_21	1499683.CCFF01000014_gene3909	101.0	6.76e-24	N/A	N/A
Pfam	UHGV-0002697_21	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0002697_21	PF14265	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0002697_22	cluster_73853	35.4	0.000000617	NA	N/A
UniRef90	UHGV-0002697_24	UniRef90_R7IWF4	395.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0002697_24	665956.HMPREF1032_03615	65.5	0.00000000617	cell adhesion	N/A
COG	UHGV-0002697_24	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_25	phrog_64	204.0	0	portal protein	head and packaging
UniRef90	UHGV-0002697_25	UniRef90_R6I230	459.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0002697_25	665956.HMPREF1032_03614	262.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0002697_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0002697_25	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0002697_26	K06909	220.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002697_26	phrog_5653	201.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0002697_26	UniRef90_R6HF73	462.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0002697_26	1408823.AXUS01000024_gene2712	350.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0002697_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0002697_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002697_26	PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0002697_27	K06909	161.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002697_27	phrog_3717	142.2	3.39955e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0002697_27	UniRef90_R6H5U4	348.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0002697_27	861454.HMPREF9099_00528	238.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0002697_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0002697_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002697_27	PF04466,MF_04145,NF002340,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0002697_28	K07474	90.0	6.2e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0002697_28	phrog_51	113.6	1.5e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0002697_28	UniRef90_R6HDV5	256.0	0	Prophage LambdaCh01 terminase small subunit	N/A
eggNOG-mapper	UHGV-0002697_28	246194.CHY_1681	135.0	6.17e-39	terminase, small subunit	N/A
Pfam	UHGV-0002697_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0002697_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0002697_30	phrog_1233	46.9	0.00000000000046	N/A	unknown function
UniRef90	UHGV-0002697_30	UniRef90_R7IWF8	126.0	2.88e-35	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0002697_30	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0002697_30	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_33	phrog_36	58.7	1.3e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0002697_33	1121871.AUAT01000030_gene1019	52.0	0.0000022	N/A	N/A
COG	UHGV-0002697_33	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0002697_33	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_34	phrog_478	134.0	5.70001e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0002697_34	UniRef90_A0A285PT53	133.0	1.47e-37	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0002697_34	1235792.C808_00058	135.0	3.91e-39	N/A	N/A
structural_annotation	UHGV-0002697_35	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_39	PF09630,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_40	phrog_34	50.2	0.000000000000057	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002697_40	UniRef90_A0A151B7Z2	120.0	5.87e-33	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0002697_40	525919.Apre_0813	102.0	1.36e-26	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0002697_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0002697_40	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_42	phrog_4973	51.3	0.00000000000002	N/A	unknown function
UniRef90	UHGV-0002697_42	UniRef90_A0A843HM15	69.3	0.0000000000000657	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0002697_42	935261.JAGL01000009_gene1175	49.7	0.000000467	Helix-turn-helix domain	N/A
Pfam	UHGV-0002697_42	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0002697_42	PF14090,NF008549,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002697_44	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_45	phrog_11769	195.6	0	N/A	unknown function
UniRef90	UHGV-0002697_45	UniRef90_UPI000C082241	192.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0002697_45	1499683.CCFF01000013_gene501	192.0	0	phage replisome	N/A
Pfam	UHGV-0002697_45	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0002697_45	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0002697_45	PF09681,TIGR01714,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_46	phrog_7566	46.5	0.00000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0002697_46	1118057.CAGX01000020_gene1648	49.7	0.00000032	N/A	N/A
PHROG	UHGV-0002697_48	phrog_72	60.7	8.6e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002697_48	UniRef90_A0A8D9PDS2	100.0	1.38e-23	NinB protein	N/A
eggNOG-mapper	UHGV-0002697_48	445972.ANACOL_01825	92.0	5.71e-21	N/A	N/A
structural_annotation	UHGV-0002697_48	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_49	phrog_7545	91.2	1.6e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002697_49	UniRef90_R7BGM2	147.0	9.75023e-42	Gp148	N/A
eggNOG-mapper	UHGV-0002697_49	552525.B5LPN5_9CAUD	83.6	1.4e-17	HNH endonuclease	N/A
Pfam	UHGV-0002697_49	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0002697_49	PF13392,PF13384,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_50	phrog_124	86.0	5.4e-25	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002697_50	UniRef90_A0A7X7HFU7	296.0	0	AAA family ATPase	N/A
Pfam	UHGV-0002697_50	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0002697_50	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0002697_50	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0002697_51	phrog_253	107.4	1.3e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002697_51	UniRef90_A0A4V1QXJ0	107.0	2.06e-26	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0002697_51	500633.CLOHIR_01418	97.1	4.13e-23	Siphovirus Gp157	N/A
Pfam	UHGV-0002697_51	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0002697_51	PF05565,NF002139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002697_55	UniRef90_A0A8B4HXZ0	73.2	0.00000000000000181	Prophage pi2 protein 05	N/A
eggNOG-mapper	UHGV-0002697_55	1121947.AUHK01000002_gene903	68.9	0.000000000000012	N/A	N/A
Pfam	UHGV-0002697_55	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0002697_55	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0002697_55	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A