UHGV-0002881 (vOTU-170127)

Viral Genome: UHGV-0002881

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002881
vOTU ID	vOTU-170127
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_D_12_1182__NODE_659_length_102326_cov_20.849514_1
Associated BioSample	SAMEA4765641
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.91 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.47
Jumbo phage	No

Genome content
Genome length (bp)	27,800
GC content	39.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	98%
Average CDS length (bps)	544.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002881_1	phrog_443	51.5	0.000000000000028	holin	lysis
UniRef90	UHGV-0002881_1	UniRef90_R6R2Q3	94.7	2.26e-24	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0002881_1	1235797.C816_04172	88.2	1.53e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0002881_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0002881_1	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_2	phrog_4105	81.3	9.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0002881_2	610130.Closa_0762	97.4	7.15e-25	N/A	N/A
PHROG	UHGV-0002881_4	phrog_819	43.6	0.0000000000016	tail protein	tail
PHROG	UHGV-0002881_5	phrog_13879	99.7	1.3e-30	N/A	unknown function
structural_annotation	UHGV-0002881_5	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_6	phrog_1194	44.6	0.0000000000023	N/A	unknown function
structural_annotation	UHGV-0002881_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_7	phrog_27166	40.0	0.000000000029	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002881_7	1236497.BAJQ01000020_gene1850	202.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0002881_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0002881_8	phrog_2066	42.2	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0002881_8	1499683.CCFF01000017_gene2924	65.5	0.00000000000398	N/A	N/A
UniRef90	UHGV-0002881_9	UniRef90_UPI0005AA54D3	71.2	0.0000000000000793	N/A	N/A
eggNOG-mapper	UHGV-0002881_9	1499683.CCFF01000017_gene2925	71.2	0.0000000000000133	N/A	N/A
Pfam	UHGV-0002881_9	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0002881_9	PF19591,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_10	phrog_158	71.2	2e-20	major tail protein	tail
UniRef90	UHGV-0002881_10	UniRef90_A0A1M6MXK1	123.0	1.54e-33	Phage tail tube protein, TTP	N/A
eggNOG-mapper	UHGV-0002881_10	1209989.TepiRe1_1157	105.0	5.02e-27	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0002881_10	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0002881_10	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_12	phrog_5	84.6	1.5e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0002881_12	UniRef90_UPI0006C21968	133.0	2.08e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0002881_12	1540257.JQMW01000009_gene3375	128.0	3.89e-36	N/A	N/A
Pfam	UHGV-0002881_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0002881_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0002881_12	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002881_13	1499683.CCFF01000017_gene2929	55.8	0.00000000775	N/A	N/A
structural_annotation	UHGV-0002881_13	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_14	phrog_132	60.2	3.2e-17	head-tail adaptor	connector
UniRef90	UHGV-0002881_14	UniRef90_UPI00096DC273	70.5	0.0000000000000821	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0002881_14	1540257.JQMW01000009_gene3373	67.4	0.000000000000212	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0002881_14	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0002881_14	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_15	phrog_422	189.4	0	major head protein	head and packaging
UniRef90	UHGV-0002881_15	UniRef90_R6RKD0	449.0	0	Gp7	N/A
eggNOG-mapper	UHGV-0002881_15	1430331.EP10_10365	280.0	0	N/A	N/A
structural_annotation	UHGV-0002881_15	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_16	phrog_172	152.0	2.8026e-45	head scaffolding protein	head and packaging
UniRef90	UHGV-0002881_16	UniRef90_UPI0012E1D36F	147.0	4.13005e-41	N/A	N/A
eggNOG-mapper	UHGV-0002881_16	1280689.AUJC01000003_gene966	149.0	1.68016e-42	N/A	N/A
Pfam	UHGV-0002881_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0002881_16	PF14265	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002881_17	1423758.BN55_08465	59.3	0.000000000132	N/A	N/A
structural_annotation	UHGV-0002881_17	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_18	phrog_34144	72.5	4.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0002881_18	1118057.CAGX01000020_gene1617	65.1	0.000000000000138	N/A	N/A
PHROG	UHGV-0002881_19	phrog_115	177.4	0	minor head protein	head and packaging
UniRef90	UHGV-0002881_19	UniRef90_UPI0002F591B7	160.0	4.88002e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0002881_19	1118057.CAGX01000020_gene1618	160.0	8.17938e-42	Phage Mu protein F like protein	N/A
Pfam	UHGV-0002881_19	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0002881_19	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0002881_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002881_19	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_20	phrog_64	436.9	0	portal protein	head and packaging
UniRef90	UHGV-0002881_20	UniRef90_UPI001C3CC14D	312.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0002881_20	445972.ANACOL_00534	293.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0002881_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0002881_20	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0002881_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0002881_21	K06909	121.2	1.2e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002881_21	phrog_2	128.0	1.2e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0002881_21	UniRef90_A0A1B9AU50	572.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0002881_21	1196031.ALEG01000039_gene1286	544.0	0	Terminase-like family	N/A
Pfam	UHGV-0002881_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0002881_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0002881_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002881_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_23	phrog_36	56.9	4.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002881_23	UniRef90_A0A7W3XTD4	58.5	0.0000000324	DNA-directed RNA polymerase specialized sigma subunit	N/A
eggNOG-mapper	UHGV-0002881_23	1200567.JNKD01000011_gene654	55.5	0.0000000723	sigma factor activity	N/A
COG	UHGV-0002881_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0002881_23	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_30	phrog_10714	48.7	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0002881_30	1120998.AUFC01000030_gene2222	47.8	0.00000749	N/A	N/A
PHROG	UHGV-0002881_31	phrog_17260	202.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0002881_31	1265505.ATUG01000002_gene2539	177.0	0	N/A	N/A
AcrCatalog	UHGV-0002881_31	cluster_11231	174.0	0	NA	N/A
PHROG	UHGV-0002881_33	phrog_8684	104.3	9.5e-31	N/A	unknown function
UniRef90	UHGV-0002881_33	UniRef90_A0A416ZXS5	95.9	2.11e-22	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0002881_33	742735.HMPREF9467_00920	82.0	5.48e-18	YopX protein	N/A
Pfam	UHGV-0002881_33	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0002881_33	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0002881_33	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0002881_34	K07317	46.8	0.0000000000003	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0002881_34	phrog_21201	54.2	0.0000000000000021	DNA methyltransferase	other
UniRef90	UHGV-0002881_34	UniRef90_A0A1C6BWK1	189.0	0	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-0002881_34	1392491.JIAE01000001_gene2187	97.1	5.97e-23	Type II restriction enzyme, methylase subunits	N/A
COG	UHGV-0002881_34	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-0002881_34	PF20473,MF_02217,NF001556,COG0742	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002881_36	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_37	phrog_757	196.0	0	DNA methyltransferase	other
UniRef90	UHGV-0002881_37	UniRef90_A0A355KVL2	352.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0002881_37	748224.HMPREF9436_03069	315.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0002881_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0002881_37	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002881_39	UniRef90_A0A098GES5	80.5	1.05e-17	Putative phage associated protein	N/A
structural_annotation	UHGV-0002881_39	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
Pfam	UHGV-0002881_41	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
KOfam	UHGV-0002881_42	K01160	60.1	6.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0002881_42	phrog_140	140.0	1.10002e-41	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002881_42	UniRef90_UPI001915D0A5	141.0	2.16e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0002881_42	411461.DORFOR_00015	120.0	5.88e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0002881_42	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0002881_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0002881_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_43	phrog_9804	159.2	0	N/A	unknown function
UniRef90	UHGV-0002881_43	UniRef90_A0A0D1C1H4	143.0	2.93e-40	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0002881_43	903814.ELI_3550	139.0	2.12e-39	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0002881_43	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0002881_43	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_44	phrog_678	57.6	1.5e-16	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002881_44	UniRef90_UPI00195D258D	94.4	1.69e-19	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0002881_44	1139219.I569_00217	99.8	2.42e-22	Replication initiation and membrane attachment	N/A
COG	UHGV-0002881_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0002881_44	PF04492,MF_01911,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0002881_45	K03111	144.9	8.99634e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002881_45	phrog_44	143.0	1.90016e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002881_45	UniRef90_A0A3C1A6Q0	187.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002881_45	445972.ANACOL_01827	146.0	1.90577e-43	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0002881_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0002881_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0002881_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0002881_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002881_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0002881_46	PF08279	N/A	N/A	HTH domain	HTH_11
PHROG	UHGV-0002881_47	phrog_398	195.5	0	N/A	unknown function
UniRef90	UHGV-0002881_47	UniRef90_UPI00108248B6	192.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0002881_47	1200557.JHWV01000006_gene1749	175.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0002881_47	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0002881_47	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-0002881_48	K06167	53.1	0.0000000000000048	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0002881_48	phrog_392	146.2	2.70451e-43	metal-dependent hydrolase	other
UniRef90	UHGV-0002881_48	UniRef90_A0A7X8XIL0	283.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0002881_48	665956.HMPREF1032_03101	226.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0002881_48	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0002881_48	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0002881_48	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0002881_49	K07455	197.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0002881_49	phrog_148	217.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002881_49	UniRef90_UPI001D034282	356.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0002881_49	1095750.HMPREF9970_1675	307.0	0	RecT family	N/A
Pfam	UHGV-0002881_49	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0002881_49	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0002881_49	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0002881_49	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0002881_50	phrog_674	149.2	2.24208e-44	N/A	unknown function
UniRef90	UHGV-0002881_50	UniRef90_A0A7X9AE52	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002881_50	641112.ACOK01000103_gene524	196.0	0	N/A	N/A
Pfam	UHGV-0002881_50	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0002881_50	PF07083	N/A	N/A	N/A	N/A