UHGV-0002882 (vOTU-170129)

Viral Genome: UHGV-0002882

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002882
vOTU ID	vOTU-170129
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_D_12_1182__NODE_349_length_145609_cov_6.825337_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.49
Jumbo phage	No

Genome content
Genome length (bp)	22,312
GC content	43.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	94%
Average CDS length (bps)	585.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002882_2	phrog_15198	42.1	0.000000000014	N/A	unknown function
UniRef90	UHGV-0002882_2	UniRef90_UPI00156ED5AF	100.0	8.65e-26	N/A	N/A
eggNOG-mapper	UHGV-0002882_2	1256908.HMPREF0373_00667	86.3	8.31e-21	N/A	N/A
Pfam	UHGV-0002882_2	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0002882_2	PF04448	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002882_3	1235800.C819_02254	114.0	4.55e-31	HNH nucleases	N/A
eggNOG-mapper	UHGV-0002882_4	1449050.JNLE01000005_gene3947	62.0	0.00000000317	N/A	N/A
UniRef90	UHGV-0002882_5	UniRef90_UPI001D075241	51.6	0.00000305	N/A	N/A
eggNOG-mapper	UHGV-0002882_5	658655.HMPREF0988_00866	52.0	0.000000156	N/A	N/A
KOfam	UHGV-0002882_6	K03111	134.3	1.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002882_6	phrog_44	124.7	8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002882_6	UniRef90_R5KD39	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002882_6	357809.Cphy_3773	179.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0002882_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0002882_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0002882_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0002882_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002882_6	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002882_7	UniRef90_A0A064AMU0	54.3	0.0000000252	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0002882_7	397291.C804_01600	51.6	0.000000048	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0002882_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0002882_7	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_8	phrog_874	169.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0002882_8	632245.CLP_1629	170.0	0	N/A	N/A
structural_annotation	UHGV-0002882_8	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002882_9	1038860.AXAP01000142_gene3008	51.2	0.000000393	N/A	N/A
eggNOG-mapper	UHGV-0002882_10	457421.CBFG_01561	153.0	0	N/A	N/A
NCBIFam	UHGV-0002882_10	NF041591.1	N/A	N/A	VVA0879 family protein	N/A
structural_annotation	UHGV-0002882_10	NF041591	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_13	phrog_36	66.3	5.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002882_13	UniRef90_UPI000E44A7EA	80.5	1.36e-16	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0002882_13	397290.C810_01391	99.0	1.57e-24	N/A	N/A
structural_annotation	UHGV-0002882_13	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002882_15	UniRef90_A0A3A9H623	66.2	0.000000000000498	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0002882_15	1042156.CXIVA_01520	56.2	0.000000000741	N/A	N/A
PHROG	UHGV-0002882_16	phrog_338	104.4	1.4e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002882_16	UniRef90_A0A356C4J5	191.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0002882_16	1280698.AUJS01000007_gene1032	186.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0002882_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0002882_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0002882_16	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_17	phrog_104	258.5	0	portal protein	head and packaging
UniRef90	UHGV-0002882_17	UniRef90_A0A1C5Y923	584.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0002882_17	665950.HMPREF1025_02537	594.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0002882_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_18	phrog_2494	315.3	0	minor head protein	head and packaging
UniRef90	UHGV-0002882_18	UniRef90_UPI001F3BD4CE	270.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002882_18	875454.BAEW01000017_gene1600	236.0	0	N/A	N/A
structural_annotation	UHGV-0002882_18	PF03496	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002882_19	1123033.ARNF01000063_gene540	51.6	0.00000105	N/A	N/A
PHROG	UHGV-0002882_20	phrog_17688	332.0	0	N/A	unknown function
UniRef90	UHGV-0002882_20	UniRef90_UPI001F2435FC	705.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0002882_20	936375.HMPREF1152_0677	607.0	0	phage terminase, large subunit	N/A
COG	UHGV-0002882_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0002882_20	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_21	phrog_233	85.8	9.3e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0002882_21	UniRef90_A0A890GYE3	141.0	7.13e-40	N/A	N/A
eggNOG-mapper	UHGV-0002882_21	706433.HMPREF9430_01266	137.0	2.76e-39	N/A	N/A
Pfam	UHGV-0002882_21	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0002882_21	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_22	phrog_32396	145.2	1.4013e-43	N/A	unknown function
UniRef90	UHGV-0002882_22	UniRef90_UPI001961D35B	434.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0002882_22	1280698.AUJS01000007_gene1038	437.0	0	Phage capsid family	N/A
Pfam	UHGV-0002882_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-0002882_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_24	phrog_137	92.9	2.5e-27	head-tail adaptor Ad1	connector
UniRef90	UHGV-0002882_24	UniRef90_UPI0003FE46E5	171.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0002882_24	1069534.LRC_07290	166.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0002882_24	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0002882_24	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_25	phrog_501	101.2	7.5e-30	head closure Hc1	connector
UniRef90	UHGV-0002882_25	UniRef90_G2SN45	142.0	8.38957e-42	N/A	N/A
eggNOG-mapper	UHGV-0002882_25	1069534.LRC_07300	142.0	1.40971e-42	N/A	N/A
structural_annotation	UHGV-0002882_25	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_26	phrog_387	60.1	3.4e-17	neck protein	connector
UniRef90	UHGV-0002882_26	UniRef90_A0A380KNT4	57.0	0.00000000578	N/A	N/A
eggNOG-mapper	UHGV-0002882_26	1321372.AQQB01000060_gene67	65.5	0.000000000000435	N/A	N/A
PHROG	UHGV-0002882_27	phrog_123	67.4	2.3e-19	tail terminator	connector
UniRef90	UHGV-0002882_27	UniRef90_F3MWA9	116.0	1.24e-31	N/A	N/A
eggNOG-mapper	UHGV-0002882_27	665950.HMPREF1025_02526	120.0	8.62e-34	N/A	N/A
structural_annotation	UHGV-0002882_27	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_28	phrog_117	159.5	0	major tail protein	tail
UniRef90	UHGV-0002882_28	UniRef90_A0A356C4M0	253.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0002882_28	1121864.OMO_02158	232.0	0	domain, Protein	N/A
COG	UHGV-0002882_28	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002882_28	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_29	phrog_1526	56.6	4.3e-16	N/A	unknown function
PHROG	UHGV-0002882_30	phrog_1633	141.4	2.90069e-42	N/A	unknown function
UniRef90	UHGV-0002882_30	UniRef90_A0A847K8R8	124.0	2.08e-34	N/A	N/A
eggNOG-mapper	UHGV-0002882_30	1121864.OMO_02160	120.0	1.49e-33	N/A	N/A
Pfam	UHGV-0002882_30	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0002882_30	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_31	phrog_6900	254.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002882_31	875454.BAEW01000017_gene1587	320.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0002882_31	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002882_31	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_32	phrog_33	71.4	1.8e-20	distal tail protein Dit	tail
UniRef90	UHGV-0002882_32	UniRef90_A0A374UNT1	201.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-0002882_32	1304866.K413DRAFT_1235	191.0	0	PFAM Phage tail protein	N/A
NCBIFam	UHGV-0002882_32	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0002882_32	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0002882_32	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0002882_33	phrog_9886	462.0	0	N/A	unknown function
UniRef90	UHGV-0002882_33	UniRef90_A0A415N138	463.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002882_33	1120933.ATUY01000002_gene164	437.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0002882_33	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0002882_33	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0002882_33	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0002882_33	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002882_34	1235790.C805_00377	62.0	0.0000000156	N/A	N/A
PHROG	UHGV-0002882_35	phrog_199	76.6	3e-22	holin	lysis
UniRef90	UHGV-0002882_35	UniRef90_UPI001EE92C08	188.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0002882_35	1235793.C809_01935	176.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0002882_35	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0002882_35	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0002882_35	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0002882_35	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0002882_36	K00689	57.5	6.7e-17	E2.4.1.5; dextransucrase [EC:2.4.1.5]	N/A
PHROG	UHGV-0002882_36	phrog_7854	67.7	3.2e-26	endolysin	lysis
UniRef90	UHGV-0002882_36	UniRef90_R6Q814	130.0	3.3e-33	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002882_36	411902.CLOBOL_00116	125.0	1.36e-31	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-0002882_36	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-0002882_36	PF19085	N/A	N/A	Choline-binding repeat	Choline_bind_2
COG	UHGV-0002882_36	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0002882_36	PF19127,PF00877,TIGR04035,NF033742,COG5263	N/A	N/A	N/A	N/A