UHGV-0002893 (vOTU-062175)

Viral Genome: UHGV-0002893

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0002893
vOTU ID	vOTU-062175
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_20_1823__NODE_519_length_69963_cov_8.264202_1
Associated BioSample	SAMEA4766060
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9765
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.21
Jumbo phage	No

Genome content
Genome length (bp)	32,348
GC content	56.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	92%
Average CDS length (bps)	708.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0002893_1	K18830	65.6	1e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0002893_1	phrog_8	55.8	5.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002893_1	UniRef90_A0A3A9EYK4	109.0	4.48e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002893_1	397290.C810_05152	94.7	7.09e-23	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0002893_1	retron_type_VI_hth_cluster2_1	41.3	0.000000000032	N/A	Retron
Pfam	UHGV-0002893_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002893_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002893_8	PF19607	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_9	K03546	62.8	4.2e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0002893_9	phrog_1499	446.3	0	N/A	unknown function
UniRef90	UHGV-0002893_9	UniRef90_UPI00195C90A1	476.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0002893_9	411462.DORLON_00812	459.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0002893_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0002893_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0002893_9	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_10	phrog_124	198.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002893_10	UniRef90_A0A7T5JPL0	329.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0002893_10	1232449.BAHV02000010_gene2697	322.0	0	AAA domain	N/A
Pfam	UHGV-0002893_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0002893_10	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_11	phrog_2698	154.8	0	N/A	unknown function
UniRef90	UHGV-0002893_11	UniRef90_UPI001B3C89FE	140.0	3.25e-39	N/A	N/A
eggNOG-mapper	UHGV-0002893_11	1321784.HMPREF1987_01110	126.0	7.67e-35	N/A	N/A
structural_annotation	UHGV-0002893_11	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_12	K17677	367.2	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0002893_12	phrog_16	279.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002893_12	UniRef90_A0A1I0J5V3	836.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0002893_12	610130.Closa_1369	822.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0002893_12	mREase_IV_00005	129.5	3.2e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0002893_12	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0002893_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0002893_12	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0002893_12	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_13	K07505	370.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0002893_13	phrog_2597	1094.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002893_13	UniRef90_UPI001107534D	937.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0002893_13	552396.HMPREF0863_02435	923.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0002893_13	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0002893_13	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0002893_13	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0002893_13	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_15	K01160	55.0	0.0000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0002893_15	phrog_140	100.9	1.2e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002893_15	UniRef90_UPI00195E3E15	188.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0002893_15	478749.BRYFOR_07588	186.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0002893_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0002893_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0002893_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002893_17	910313.HMPREF9320_1544	52.8	0.00000601	Peptidase S24-like	N/A
Pfam	UHGV-0002893_17	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0002893_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002893_17	PF13560,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002893_19	991905.SL003B_3762	63.5	0.00000000000765	N/A	N/A
eggNOG-mapper	UHGV-0002893_20	1297617.JPJD01000059_gene2640	92.4	9.05e-22	N/A	N/A
PHROG	UHGV-0002893_21	phrog_8680	254.6	0	N/A	unknown function
UniRef90	UHGV-0002893_21	UniRef90_UPI0015711ED3	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002893_21	411470.RUMGNA_02208	295.0	0	N/A	N/A
Pfam	UHGV-0002893_21	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0002893_21	PF14386	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_23	K06909	131.3	9e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002893_23	phrog_10250	198.2	0	N/A	unknown function
UniRef90	UHGV-0002893_23	UniRef90_A0A316PPL4	585.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0002893_23	877414.ATWA01000001_gene906	545.0	0	Terminase-like family	N/A
Pfam	UHGV-0002893_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0002893_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0002893_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002893_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_24	phrog_64	354.2	0	portal protein	head and packaging
UniRef90	UHGV-0002893_24	UniRef90_A0A316PPQ6	598.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0002893_24	877414.ATWA01000001_gene907	540.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0002893_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0002893_24	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0002893_24	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_25	phrog_115	297.2	0	minor head protein	head and packaging
UniRef90	UHGV-0002893_25	UniRef90_A0A415Z1K6	363.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0002893_25	60520.HR47_13490	234.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0002893_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0002893_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0002893_25	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_26	phrog_3711	76.8	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0002893_26	411469.EUBHAL_01002	64.3	0.00000000000152	N/A	N/A
PHROG	UHGV-0002893_27	phrog_2657	194.5	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002893_27	UniRef90_UPI00164A231C	315.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002893_27	411490.ANACAC_00702	279.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0002893_27	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0002893_27	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0002893_27	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0002893_27	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_28	phrog_172	119.3	3.6e-35	head scaffolding protein	head and packaging
UniRef90	UHGV-0002893_28	UniRef90_A0A316RQZ9	110.0	1.39e-26	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0002893_28	1499683.CCFF01000014_gene3909	97.8	2.84e-22	N/A	N/A
Pfam	UHGV-0002893_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0002893_28	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_29	phrog_283	292.7	0	major head protein	head and packaging
UniRef90	UHGV-0002893_29	UniRef90_A0A1I2NUB2	515.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0002893_29	1499683.CCFF01000014_gene3908	511.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0002893_29	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0002893_29	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002893_31	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_33	phrog_5	54.2	0.0000000000000037	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0002893_33	1235800.C819_00481	66.6	0.0000000000182	N/A	N/A
Pfam	UHGV-0002893_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0002893_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_34	phrog_78	44.0	0.0000000000039	tail terminator	connector
structural_annotation	UHGV-0002893_34	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_35	phrog_158	50.0	0.000000000000052	major tail protein	tail
UniRef90	UHGV-0002893_35	UniRef90_R5YR40	181.0	0	Major tail protein putative	N/A
eggNOG-mapper	UHGV-0002893_35	1280692.AUJL01000025_gene2074	73.2	0.0000000000000148	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0002893_35	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0002893_35	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002893_36	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_38	K10421	44.3	0.00000000000098	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0002893_38	phrog_1535	153.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0002893_38	1232453.BAIF02000058_gene1637	68.6	0.0000000141	phage tail tape measure protein	N/A
COG	UHGV-0002893_38	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0002893_38	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_39	phrog_1194	89.8	2.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0002893_39	877414.ATWA01000001_gene917	145.0	2.158e-43	N/A	N/A
structural_annotation	UHGV-0002893_39	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_40	phrog_22212	107.5	5.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0002893_40	1262449.CP6013_3213	102.0	1.01e-19	Phage minor structural protein	N/A
COG	UHGV-0002893_40	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0002893_40	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0002893_41	phrog_199	81.4	9.1e-24	holin	lysis
UniRef90	UHGV-0002893_41	UniRef90_A0A3R6P3L6	169.0	0	Holin	N/A
eggNOG-mapper	UHGV-0002893_41	742740.HMPREF9474_02333	165.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0002893_41	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0002893_41	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0002893_41	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0002893_41	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0002893_42	K07273	162.8	0	acm; lysozyme	N/A
PHROG	UHGV-0002893_42	phrog_291	136.3	1.90001e-40	endolysin	lysis
UniRef90	UHGV-0002893_42	UniRef90_UPI0006915851	106.0	6.29e-22	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0002893_42	1408304.JAHA01000019_gene2850	126.0	5.39e-28	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0002893_42	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0002893_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0002893_42	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A