UHGV-0003674 (vOTU-076690)

Viral Genome: UHGV-0003674

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0003674
vOTU ID	vOTU-076690
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_8_1631__NODE_109_length_158972_cov_15.958841_1
Associated BioSample	SAMEA4765911
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9684
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.73
Jumbo phage	No

Genome content
Genome length (bp)	40,869
GC content	39.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	93%
Average CDS length (bps)	544.33
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0003674_1	1232453.BAIF02000019_gene3948	248.0	0	N/A	N/A
UniRef90	UHGV-0003674_2	UniRef90_A0A7Y0TZP0	269.0	0	Alpha/beta hydrolase	N/A
eggNOG-mapper	UHGV-0003674_2	748224.HMPREF9436_01126	281.0	0	N/A	N/A
COG	UHGV-0003674_2	COG1073	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003674_3	742738.HMPREF9460_03537	91.7	4.64e-23	N/A	N/A
eggNOG-mapper	UHGV-0003674_4	742738.HMPREF9460_03538	117.0	1.86e-32	N/A	N/A
eggNOG-mapper	UHGV-0003674_5	742738.HMPREF9460_02894	84.0	3.21e-19	N/A	N/A
KOfam	UHGV-0003674_6	K14059	177.0	0	int; integrase	N/A
PHROG	UHGV-0003674_6	phrog_1	177.0	0	integrase	integration and excision
UniRef90	UHGV-0003674_6	UniRef90_UPI00156E983E	251.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0003674_6	1304866.K413DRAFT_1180	219.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0003674_6	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0003674_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0003674_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0003674_6	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_7	phrog_1914	105.6	6.9e-32	N/A	unknown function
UniRef90	UHGV-0003674_7	UniRef90_R6DVV5	243.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0003674_7	1160721.RBI_I01604	145.0	9.12946e-42	N/A	N/A
Pfam	UHGV-0003674_7	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0003674_7	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0003674_7	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_8	K22300	44.0	0.0000000000042	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0003674_8	phrog_8	73.1	5.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0003674_8	UniRef90_A0A4S2A889	99.4	3.98e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0003674_8	1226322.HMPREF1545_02463	96.7	7.74e-25	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0003674_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0003674_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0003674_8	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_11	K07729	44.7	0.0000000000028	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0003674_11	phrog_3	42.4	0.000000000026	transcriptional repressor	transcription regulation
UniRef90	UHGV-0003674_11	UniRef90_A0A354M9D6	108.0	8.44e-30	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0003674_11	1196324.A374_08974	54.3	0.00000000337	Transcriptional	N/A
PADLOC	UHGV-0003674_11	retron_type_VI_hth_cluster2_1	44.9	0.0000000000036	N/A	Retron
Pfam	UHGV-0003674_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0003674_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0003674_11	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003674_14	UniRef90_A0A354M9D8	114.0	1.09e-31	Toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-0003674_14	887929.HMP0721_1290	54.7	0.00000000927	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0003674_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_19	PF01376	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_21	K02338	178.9	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0003674_21	phrog_947	141.1	7.90052e-42	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_21	UniRef90_A0A354M9D1	563.0	0	DNA polymerase III subunit beta	N/A
eggNOG-mapper	UHGV-0003674_21	1211817.CCAT010000071_gene1288	103.0	6.97e-22	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0003674_21	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0003674_21	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
COG	UHGV-0003674_21	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0003674_21	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_22	K07319	94.3	1.1e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0003674_22	phrog_16	229.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_22	UniRef90_R6E553	1310.0	0	DNA methylase family protein	N/A
eggNOG-mapper	UHGV-0003674_22	1123489.AUAN01000010_gene370	1192.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0003674_22	MTase_II_00085	40.7	0.00000000000012	Type II methyltransferase	RM
Pfam	UHGV-0003674_22	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0003674_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0003674_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0003674_22	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_23	phrog_15609	43.8	0.0000000000036	N/A	unknown function
structural_annotation	UHGV-0003674_24	PF09871,COG4014	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003674_27	411473.RUMCAL_02525	97.8	3.49e-25	N/A	N/A
PHROG	UHGV-0003674_28	phrog_3136	112.0	2.1e-33	N/A	unknown function
UniRef90	UHGV-0003674_28	UniRef90_UPI001C02A61B	128.0	3.17e-33	ASCH domain-containing protein	N/A
COG	UHGV-0003674_28	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0003674_28	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_30	K10906	96.5	8.2e-35	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0003674_30	phrog_412	245.9	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_30	UniRef90_A0A3D4T735	456.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003674_30	641147.HMPREF9021_02702	152.0	4.77002e-42	N/A	N/A
Pfam	UHGV-0003674_30	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0003674_30	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0003674_30	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_31	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_32	phrog_561	177.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_32	UniRef90_UPI001EE8E2AA	254.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0003674_32	887325.HMPREF0381_0098	207.0	0	N/A	N/A
Pfam	UHGV-0003674_32	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0003674_32	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_34	K03111	135.3	6.7e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0003674_34	phrog_44	137.4	9.40005e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_34	UniRef90_A0A3D4T9F8	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0003674_34	1507.HMPREF0262_03706	142.0	1.60995e-41	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0003674_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0003674_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0003674_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0003674_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0003674_34	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_35	phrog_3490	91.8	2.4e-27	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_35	UniRef90_A0A3D4T734	186.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0003674_35	861454.HMPREF9099_00350	90.1	2.97e-20	ERCC4 domain	N/A
structural_annotation	UHGV-0003674_35	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0003674_36	K02316	85.2	9.2e-25	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0003674_36	phrog_11992	104.3	1.5e-30	N/A	unknown function
UniRef90	UHGV-0003674_36	UniRef90_G5HSJ4	93.2	2.1e-20	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0003674_36	742733.HMPREF9469_05556	93.2	3.52e-21	CHC2 zinc finger	N/A
PADLOC	UHGV-0003674_36	drt-UG29	75.0	7.7e-22	DRT	DRT
Pfam	UHGV-0003674_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0003674_36	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0003674_36	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_37	phrog_8841	452.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003674_37	UniRef90_A0A3E2N8X9	464.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003674_37	1298920.KI911353_gene4866	442.0	0	N/A	N/A
Pfam	UHGV-0003674_37	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0003674_37	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0003674_37	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_37	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_41	phrog_18349	83.6	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0003674_41	476272.RUMHYD_03338	97.1	1.2e-23	N/A	N/A
KOfam	UHGV-0003674_45	K06909	219.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0003674_45	phrog_3717	103.6	1.1e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0003674_45	UniRef90_A0A2K3J9D8	691.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0003674_45	1273103.NM10_06806	262.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0003674_45	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0003674_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0003674_45	PF04466,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_46	phrog_533	127.6	7.3e-38	portal protein	head and packaging
eggNOG-mapper	UHGV-0003674_46	33035.JPJF01000106_gene3135	84.3	0.00000000000000927	phage minor capsid protein	N/A
structural_annotation	UHGV-0003674_46	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_47	phrog_581	173.9	0	minor head protein	head and packaging
UniRef90	UHGV-0003674_47	UniRef90_A0A1C6B625	289.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0003674_47	1226322.HMPREF1545_00046	187.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0003674_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0003674_47	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0003674_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_47	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_48	phrog_1865	50.3	0.000000000000034	N/A	unknown function
PHROG	UHGV-0003674_50	phrog_422	242.7	0	major head protein	head and packaging
UniRef90	UHGV-0003674_50	UniRef90_W0U896	392.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0003674_50	1160721.RBI_II00538	392.0	0	N/A	N/A
structural_annotation	UHGV-0003674_50	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_52	phrog_541	78.9	5.8e-23	head-tail adaptor	connector
PHROG	UHGV-0003674_53	phrog_3366	77.9	1.3e-22	N/A	unknown function
structural_annotation	UHGV-0003674_53	PF20536	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_54	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003674_55	UniRef90_UPI000B35398A	57.0	0.000000109	minor capsid protein	N/A
eggNOG-mapper	UHGV-0003674_55	411902.CLOBOL_00131	56.6	0.0000000277	Minor capsid protein	N/A
structural_annotation	UHGV-0003674_55	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_56	phrog_3099	44.8	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0003674_56	665956.HMPREF1032_03060	57.8	0.000000067	N/A	N/A
structural_annotation	UHGV-0003674_56	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_57	phrog_7115	104.5	7.2e-31	N/A	unknown function
UniRef90	UHGV-0003674_57	UniRef90_A0A413RCY4	142.0	3.28002e-41	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0003674_57	536233.CLO_1726	127.0	2.11e-36	Bacterial PH domain	N/A
Pfam	UHGV-0003674_57	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0003674_57	PF08000,MF_00437	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_58	phrog_11299	84.6	1.3e-24	N/A	unknown function
structural_annotation	UHGV-0003674_58	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_59	phrog_706	111.8	6e-33	N/A	unknown function
UniRef90	UHGV-0003674_59	UniRef90_UPI0011DC8B0C	160.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0003674_59	411459.RUMOBE_01383	164.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0003674_59	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0003674_59	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003674_60	1120746.CCNL01000014_gene2105	77.8	0.00000000000708	tape measure	N/A
COG	UHGV-0003674_60	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003674_60	PF05546,TIGR02559	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003674_61	1232449.BAHV02000010_gene2724	72.4	0.0000000000000232	N/A	N/A
structural_annotation	UHGV-0003674_61	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_62	phrog_13879	56.7	5.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0003674_62	1232449.BAHV02000010_gene2725	77.0	0.00000000000541	N/A	N/A
structural_annotation	UHGV-0003674_62	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_64	phrog_24267	79.2	6.6e-23	N/A	unknown function
UniRef90	UHGV-0003674_64	UniRef90_A0A6C0R0R4	54.7	0.00000828	Baseplate protein	N/A
eggNOG-mapper	UHGV-0003674_64	742742.HMPREF9452_00376	96.3	2.31e-23	tail collar domain protein	N/A
COG	UHGV-0003674_64	COG4675	N/A	N/A	Phage tail collar domain	N/A
Pfam	UHGV-0003674_65	PF14207	N/A	N/A	DpnD/PcfM-like protein	DpnD-PcfM
PHROG	UHGV-0003674_66	phrog_19695	40.2	0.000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0003674_66	476272.RUMHYD_00002	65.9	0.0000000123	N/A	N/A
UniRef90	UHGV-0003674_67	UniRef90_A0A354MB05	165.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0003674_67	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0003674_67	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-0003674_68	phrog_1863	61.2	9.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0003674_68	718252.FP2_04900	89.0	3.93e-22	N/A	N/A
KOfam	UHGV-0003674_69	K07273	172.1	0	acm; lysozyme	N/A
PHROG	UHGV-0003674_69	phrog_291	137.7	1.10001e-40	endolysin	lysis
UniRef90	UHGV-0003674_69	UniRef90_A0A354MB03	353.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0003674_69	663278.Ethha_1853	174.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0003674_69	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0003674_69	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0003674_69	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0003674_69	PF01183,PF01476,PF08230,TIGR02899,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0003674_70	phrog_443	54.9	0.0000000000000025	holin	lysis
UniRef90	UHGV-0003674_70	UniRef90_UPI0009883463	91.7	5.83e-23	holin	N/A
eggNOG-mapper	UHGV-0003674_70	1469948.JPNB01000002_gene3855	86.3	1.33e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0003674_70	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0003674_70	PF16945	N/A	N/A	N/A	N/A