UHGV-0004297 (vOTU-127792)

Viral Genome: UHGV-0004297

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004297
vOTU ID	vOTU-127792
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_2664_length_44145_cov_19.909345_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.24
Jumbo phage	No

Genome content
Genome length (bp)	33,182
GC content	38.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	94%
Average CDS length (bps)	575.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0004297_1	411459.RUMOBE_04220	86.3	8.18e-19	Histidine kinase	N/A
COG	UHGV-0004297_1	COG0642	N/A	N/A	Signal transduction histidine kinase	N/A
PHROG	UHGV-0004297_2	phrog_6616	118.4	5.6e-35	tail protein	tail
UniRef90	UHGV-0004297_2	UniRef90_UPI001C10B551	810.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0004297_2	1232453.BAIF02000058_gene1641	484.0	0	Phage minor structural protein	N/A
COG	UHGV-0004297_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0004297_2	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_3	phrog_1401	74.1	1.8e-21	N/A	unknown function
UniRef90	UHGV-0004297_3	UniRef90_A0A7C6P910	81.6	1.98e-17	N/A	N/A
eggNOG-mapper	UHGV-0004297_3	1232453.BAIF02000058_gene1640	103.0	8.51e-27	N/A	N/A
structural_annotation	UHGV-0004297_3	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_4	phrog_2566	66.2	4.3e-19	N/A	unknown function
UniRef90	UHGV-0004297_4	UniRef90_A8U7X4	51.6	0.000000699	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0004297_4	762550.LEGAS_1574	47.8	0.00000364	N/A	N/A
PHROG	UHGV-0004297_5	phrog_1194	101.9	4e-30	N/A	unknown function
UniRef90	UHGV-0004297_5	UniRef90_A0A4U9RD70	72.4	0.000000000000051	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0004297_5	1232453.BAIF02000058_gene1638	164.0	0	N/A	N/A
Pfam	UHGV-0004297_5	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0004297_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_6	phrog_1535	269.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0004297_6	UniRef90_A0A173WM72	696.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0004297_6	1304866.K413DRAFT_3046	213.0	0	N/A	N/A
COG	UHGV-0004297_6	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0004297_7	phrog_2066	79.5	4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0004297_7	1123304.AQYA01000037_gene232	60.1	0.000000000497	N/A	N/A
PHROG	UHGV-0004297_8	phrog_183	46.9	0.00000000000038	tail chaperone protein	tail
UniRef90	UHGV-0004297_8	UniRef90_UPI0011DE12FE	143.0	2.84996e-41	N/A	N/A
eggNOG-mapper	UHGV-0004297_8	742733.HMPREF9469_01816	110.0	3.77e-29	N/A	N/A
structural_annotation	UHGV-0004297_8	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_9	phrog_158	64.7	1.9e-18	major tail protein	tail
UniRef90	UHGV-0004297_9	UniRef90_A0A415FLM9	189.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0004297_9	742733.HMPREF9469_01817	181.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0004297_9	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0004297_9	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_10	phrog_78	64.0	2.8e-18	tail terminator	connector
eggNOG-mapper	UHGV-0004297_10	1235800.C819_00480	158.0	0	N/A	N/A
structural_annotation	UHGV-0004297_10	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_11	phrog_5	88.0	1.4e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-0004297_11	UniRef90_A0A173WPF3	244.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0004297_11	742733.HMPREF9469_01819	174.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0004297_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0004297_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0004297_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_12	phrog_2168	63.9	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0004297_12	1499683.CCFF01000014_gene3906	61.2	0.000000000416	N/A	N/A
structural_annotation	UHGV-0004297_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_13	phrog_132	78.5	7.2e-23	head-tail adaptor	connector
UniRef90	UHGV-0004297_13	UniRef90_A0A1C5ZQS8	134.0	6.12e-39	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0004297_13	742733.HMPREF9469_01821	125.0	6.06e-36	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0004297_13	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0004297_13	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_14	phrog_2724	48.0	0.00000000000021	N/A	unknown function
UniRef90	UHGV-0004297_14	UniRef90_A0A1C5ZQR6	56.6	0.0000000124	Rho termination factor, N-terminal domain	N/A
Pfam	UHGV-0004297_14	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0004297_14	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_15	phrog_422	297.0	0	major head protein	head and packaging
UniRef90	UHGV-0004297_15	UniRef90_A0A2H4JCM6	495.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-0004297_15	742733.HMPREF9469_01823	510.0	0	N/A	N/A
structural_annotation	UHGV-0004297_15	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_16	phrog_172	145.4	4.2039e-43	head scaffolding protein	head and packaging
UniRef90	UHGV-0004297_16	UniRef90_A0A415FLT0	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004297_16	742733.HMPREF9469_01824	196.0	0	N/A	N/A
Pfam	UHGV-0004297_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0004297_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_17	phrog_478	128.2	3.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0004297_17	UniRef90_A0A285PT53	239.0	0	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0004297_17	1235792.C808_00058	191.0	0	N/A	N/A
PHROG	UHGV-0004297_20	phrog_1048	158.0	0	N/A	unknown function
UniRef90	UHGV-0004297_20	UniRef90_A0A395V4Z5	271.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004297_20	457412.RSAG_01107	268.0	0	N/A	N/A
Pfam	UHGV-0004297_20	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0004297_20	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0004297_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_21	phrog_1726	151.1	8.40779e-45	anti-repressor	transcription regulation
UniRef90	UHGV-0004297_21	UniRef90_UPI00156D6AA7	371.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004297_21	742738.HMPREF9460_02487	169.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0004297_21	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0004297_21	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0004297_21	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0004297_21	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004297_23	411470.RUMGNA_03237	72.0	0.00000000000000266	N/A	N/A
structural_annotation	UHGV-0004297_23	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_24	phrog_1865	62.0	7.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0004297_24	1391647.AVSV01000003_gene1805	53.9	0.00000000838	N/A	N/A
structural_annotation	UHGV-0004297_24	PF07073,MF_00436,TIGR02383,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_25	phrog_2841	344.7	0	minor head protein	head and packaging
UniRef90	UHGV-0004297_25	UniRef90_A0A564VY65	704.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0004297_25	1123304.AQYA01000037_gene216	357.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0004297_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0004297_25	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
NCBIFam	UHGV-0004297_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0004297_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004297_25	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_26	phrog_64	385.3	0	portal protein	head and packaging
UniRef90	UHGV-0004297_26	UniRef90_A0A416N3J2	724.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004297_26	742733.HMPREF9469_01826	588.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0004297_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0004297_26	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0004297_26	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0004297_27	K06909	134.8	8.60001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004297_27	phrog_10250	207.3	0	N/A	unknown function
UniRef90	UHGV-0004297_27	UniRef90_UPI001C1142EA	738.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004297_27	903814.ELI_3215	630.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0004297_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0004297_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0004297_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004297_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_28	phrog_509	292.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0004297_28	UniRef90_A0A415UCQ6	465.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0004297_28	1120998.AUFC01000030_gene2230	252.0	0	DNA packaging	N/A
Pfam	UHGV-0004297_28	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0004297_28	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0004297_28	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004297_28	NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_30	phrog_36	62.4	9.6e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0004297_30	411490.ANACAC_00789	149.0	7.70714e-44	N/A	N/A
structural_annotation	UHGV-0004297_30	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004297_31	397290.C810_01505	126.0	9.88e-37	N/A	N/A
PHROG	UHGV-0004297_36	phrog_8538	98.8	3.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0004297_36	1196322.A370_02189	75.1	0.00000000000000308	N/A	N/A
PHROG	UHGV-0004297_37	phrog_7566	116.8	7.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0004297_37	97139.C824_00037	98.6	3.78e-25	N/A	N/A
PHROG	UHGV-0004297_39	phrog_15077	92.0	2.4e-27	N/A	unknown function
UniRef90	UHGV-0004297_39	UniRef90_A0A415YC35	152.0	1.09e-38	N/A	N/A
eggNOG-mapper	UHGV-0004297_39	97139.C824_00038	208.0	0	N/A	N/A
structural_annotation	UHGV-0004297_39	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_40	phrog_8470	231.2	0	N/A	unknown function
UniRef90	UHGV-0004297_40	UniRef90_UPI001C10724F	1170.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0004297_40	999413.HMPREF1094_04705	509.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0004297_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0004297_40	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004297_41	1235792.C808_00065	211.0	0	N/A	N/A
KOfam	UHGV-0004297_42	K03469	59.0	1.1e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0004297_42	phrog_531	57.1	3.3e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004297_42	UniRef90_A0A174KC84	174.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0004297_42	411461.DORFOR_01140	113.0	3.13e-30	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0004297_42	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0004297_42	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0004297_42	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_43	phrog_3584	151.0	8.40779e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004297_43	1235792.C808_03084	247.0	0	N/A	N/A
structural_annotation	UHGV-0004297_43	PF01446	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004297_45	PF10922	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004297_46	UniRef90_A0A415G6W5	215.0	0	Winged helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0004297_46	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0004297_46	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_47	phrog_9607	74.0	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0004297_47	1378168.N510_03161	115.0	3.93e-30	N/A	N/A
structural_annotation	UHGV-0004297_47	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004297_51	UniRef90_A0A416GY85	98.2	1.68e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004297_51	1347392.CCEZ01000005_gene1206	53.9	0.00000000896	N/A	N/A
structural_annotation	UHGV-0004297_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0004297_52	K07727	43.7	0.0000000000069	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0004297_52	phrog_8	40.2	0.000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004297_52	UniRef90_A0A173Z9V2	178.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0004297_52	1256908.HMPREF0373_00219	71.6	0.00000000000000754	sequence-specific DNA binding	N/A
Pfam	UHGV-0004297_52	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0004297_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004297_52	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0004297_53	phrog_87	75.5	6e-22	metallo-protease	other
UniRef90	UHGV-0004297_53	UniRef90_A0A374BT00	211.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0004297_53	1347392.CCEZ01000005_gene1204	186.0	0	Zn peptidase	N/A
Pfam	UHGV-0004297_53	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0004297_53	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0004297_53	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0004297_54	K14059	173.0	0	int; integrase	N/A
PHROG	UHGV-0004297_54	phrog_1	187.9	0	integrase	integration and excision
UniRef90	UHGV-0004297_54	UniRef90_A0A415G6Y0	667.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0004297_54	1280698.AUJS01000007_gene999	256.0	0	Phage integrase family	N/A
Pfam	UHGV-0004297_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0004297_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0004297_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A