UHGV-0004497 (vOTU-080976)

Viral Genome: UHGV-0004497

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004497
vOTU ID	vOTU-080976
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_15_1703__NODE_557_length_79257_cov_9.174855_1
Associated BioSample	SAMEA4765983
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9724
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.21
Jumbo phage	No

Genome content
Genome length (bp)	54,667
GC content	53.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	94%
Average CDS length (bps)	661.50
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0004497_1	UniRef90_A0A8F0WFB9	148.0	4.76441e-43	Putative peptidase/signaling protein	N/A
eggNOG-mapper	UHGV-0004497_1	1349822.NSB1T_07980	115.0	8.12e-31	N/A	N/A
structural_annotation	UHGV-0004497_1	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_6	phrog_5668	57.3	1.6e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0004497_6	585.DR95_1149	97.4	2.51e-17	Fibronectin type 3 domain	N/A
Pfam	UHGV-0004497_6	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0004497_6	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0004497_8	phrog_19846	382.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0004497_8	619693.HMPREF6745_2539	439.0	0	Phage minor structural protein	N/A
COG	UHGV-0004497_8	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0004497_9	UniRef90_UPI0011226A1F	73.9	0.0000000000001	phage holin family protein	N/A
eggNOG-mapper	UHGV-0004497_9	1347393.HG726024_gene2890	71.6	0.00000000000013	N/A	N/A
Pfam	UHGV-0004497_9	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0004497_9	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_10	phrog_6305	147.5	8.54792e-44	tail protein	tail
eggNOG-mapper	UHGV-0004497_10	470145.BACCOP_01128	163.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0004497_10	COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_11	phrog_9959	467.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0004497_11	UniRef90_UPI001032F2BE	367.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0004497_11	1127696.HMPREF9134_00497	345.0	0	N/A	N/A
Pfam	UHGV-0004497_11	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0004497_11	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0004497_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0004497_11	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_12	phrog_12247	116.3	1.9e-34	N/A	unknown function
UniRef90	UHGV-0004497_12	UniRef90_W1I6R7	81.6	2.82e-17	Uncultured bacterium extrachromosomal DNA RGI01907	N/A
eggNOG-mapper	UHGV-0004497_12	470145.BACCOP_01132	105.0	1.2e-26	N/A	N/A
PHROG	UHGV-0004497_13	phrog_17745	65.2	1.2e-18	N/A	unknown function
UniRef90	UHGV-0004497_13	UniRef90_UPI001C708146	60.8	0.000000203	BACON domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_13	888059.HMPREF9071_2147	66.2	0.0000000000876	N/A	N/A
Pfam	UHGV-0004497_13	PF13004	N/A	N/A	Putative binding domain, N-terminal	BACON
structural_annotation	UHGV-0004497_13	PF19190,PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_14	phrog_5597	81.4	9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0004497_14	470145.BACCOP_01134	103.0	1.58e-26	N/A	N/A
structural_annotation	UHGV-0004497_14	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_15	phrog_5377	132.3	2.3e-39	N/A	unknown function
UniRef90	UHGV-0004497_15	UniRef90_UPI0013CF742A	102.0	4.71e-25	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0004497_15	1127692.HMPREF9075_00031	113.0	4.07e-30	N/A	N/A
PHROG	UHGV-0004497_16	phrog_19449	71.3	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0004497_16	470145.BACCOP_01137	93.2	2.93e-23	N/A	N/A
structural_annotation	UHGV-0004497_16	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_17	phrog_32776	81.8	8.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0004497_17	470145.BACCOP_01138	86.3	2.11e-20	N/A	N/A
structural_annotation	UHGV-0004497_17	PF20449	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_18	phrog_29	207.1	0	major head protein	head and packaging
UniRef90	UHGV-0004497_18	UniRef90_UPI0002DEF46D	406.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0004497_18	1211813.CAPH01000015_gene744	406.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0004497_18	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-0004497_18	PF13004	N/A	N/A	Putative binding domain, N-terminal	BACON
structural_annotation	UHGV-0004497_18	PF03864,MF_04133,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_19	phrog_38330	126.1	1.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-0004497_19	1211813.CAPH01000015_gene743	108.0	3.36e-29	N/A	N/A
structural_annotation	UHGV-0004497_19	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_20	phrog_5824	113.2	4.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0004497_20	1211813.CAPH01000015_gene742	114.0	2.6e-28	N/A	N/A
PHROG	UHGV-0004497_22	phrog_15549	50.8	0.000000000000014	N/A	unknown function
UniRef90	UHGV-0004497_22	UniRef90_A0A1M3MBL5	89.0	5.52e-17	LPD29 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_22	1382359.JIAL01000001_gene261	80.5	0.00000000000000395	N/A	N/A
Pfam	UHGV-0004497_22	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
KOfam	UHGV-0004497_23	K03630	122.1	7e-36	radC; DNA repair protein RadC	N/A
PHROG	UHGV-0004497_23	phrog_10276	100.8	1.4e-29	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_23	UniRef90_A0A644VHU1	116.0	2.83e-30	MPN domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_23	1408813.AYMG01000038_gene224	110.0	6.5e-29	DNA repair	N/A
Pfam	UHGV-0004497_23	PF04002	N/A	N/A	RadC-like JAB domain	RadC
COG	UHGV-0004497_23	COG2003	N/A	N/A	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	N/A
PHROG	UHGV-0004497_28	phrog_10608	63.9	2.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0004497_28	1123058.KB894219_gene147	50.8	0.000000416	N/A	N/A
PHROG	UHGV-0004497_30	phrog_35295	350.9	0	N/A	unknown function
UniRef90	UHGV-0004497_30	UniRef90_A0A1H4E5W2	147.0	1.05e-32	ADP-ribosyltransferase exoenzyme	N/A
eggNOG-mapper	UHGV-0004497_30	470145.BACCOP_01152	293.0	0	cell adhesion	N/A
COG	UHGV-0004497_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004497_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_31	phrog_64	144.5	5.99756e-43	portal protein	head and packaging
UniRef90	UHGV-0004497_31	UniRef90_UPI00030C00C5	513.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0004497_31	1211813.CAPH01000015_gene738	482.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0004497_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0004497_31	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0004497_32	K06909	216.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004497_32	phrog_5653	116.0	2e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0004497_32	UniRef90_A0A352HNX3	505.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004497_32	1227266.HMPREF1551_00524	502.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0004497_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0004497_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0004497_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0004497_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004497_32	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004497_34	UniRef90_UPI001C60658F	125.0	5.96e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_34	357276.EL88_11345	112.0	1.04e-29	N/A	N/A
structural_annotation	UHGV-0004497_34	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_36	phrog_940	148.3	5.04467e-44	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_36	UniRef90_A0A3R6DV93	292.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004497_36	762968.HMPREF9441_00586	186.0	0	N/A	N/A
Pfam	UHGV-0004497_36	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0004497_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0004497_36	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_37	phrog_18290	65.7	6.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0004497_37	449673.BACSTE_02194	64.7	0.000000000000689	N/A	N/A
PHROG	UHGV-0004497_38	phrog_16681	171.8	0	N/A	unknown function
UniRef90	UHGV-0004497_38	UniRef90_R5I2U0	154.0	2.11596e-43	FHA domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_38	449673.BACSTE_02195	151.0	4.03574e-43	N/A	N/A
KOfam	UHGV-0004497_40	K09125	171.1	0	yhhQ; queuosine precursor transporter	N/A
PHROG	UHGV-0004497_40	phrog_4899	104.9	1e-30	N/A	unknown function
UniRef90	UHGV-0004497_40	UniRef90_A0A327JAC7	226.0	0	Probable queuosine precursor transporter	N/A
eggNOG-mapper	UHGV-0004497_40	1297581.H919_12618	223.0	0	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	N/A
Pfam	UHGV-0004497_40	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
NCBIFam	UHGV-0004497_40	TIGR00697.1	N/A	N/A	queuosine precursor transporter	N/A
COG	UHGV-0004497_40	COG1738	N/A	N/A	N/A	N/A
HAMAP	UHGV-0004497_40	MF_02088	N/A	N/A	Probable queuosine precursor transporter	N/A
structural_annotation	UHGV-0004497_40	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_41	phrog_887	127.3	1.3e-37	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004497_41	UniRef90_A0A6N7S662	248.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_41	665956.HMPREF1032_03076	117.0	3.94e-29	N/A	N/A
structural_annotation	UHGV-0004497_41	PF00331,MF_00168,NF040790,COG0069	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_42	phrog_17622	163.4	0	N/A	unknown function
UniRef90	UHGV-0004497_42	UniRef90_A0A414ZEI5	167.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0004497_42	435590.BVU_2842	162.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0004497_42	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0004497_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
eggNOG-mapper	UHGV-0004497_43	376686.Fjoh_3635	55.5	0.000000667	N/A	N/A
PHROG	UHGV-0004497_44	phrog_190	85.2	8.3e-25	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_44	UniRef90_A0A417W6H7	94.7	2.89e-22	N/A	N/A
eggNOG-mapper	UHGV-0004497_44	742767.HMPREF9456_03412	73.9	0.00000000000000286	N/A	N/A
Pfam	UHGV-0004497_44	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0004497_44	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_47	phrog_19658	87.7	3.4e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004497_47	1232446.BAIE02000002_gene816	81.3	0.00000000000000588	N/A	N/A
PHROG	UHGV-0004497_50	phrog_799	165.7	0	DNA methyltransferase	other
UniRef90	UHGV-0004497_50	UniRef90_A0A413BQE0	223.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0004497_50	762984.HMPREF9445_00917	167.0	0	DNA restriction-modification system	N/A
COG	UHGV-0004497_50	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0004497_50	PF03848,MF_00341,NF012219,COG1255	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_56	phrog_28300	43.2	0.0000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0004497_56	483215.BACFIN_06266	47.0	0.00000738	N/A	N/A
PHROG	UHGV-0004497_59	phrog_236	49.9	0.00000000000007	nucleotide kinase	other
eggNOG-mapper	UHGV-0004497_59	1236504.HMPREF2132_11120	53.5	0.00000114	N/A	N/A
Pfam	UHGV-0004497_59	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0004497_63	PF19594	N/A	N/A	N/A	N/A
KOfam	UHGV-0004497_66	K01520	124.4	1e-36	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0004497_66	phrog_135	125.7	2.7e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_66	UniRef90_A0A3G3BXQ0	173.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0004497_66	1187128.I2GUG7_9CAUD	166.0	0	dUTPase	N/A
Pfam	UHGV-0004497_66	PF00692	N/A	N/A	dUTPase	dUTPase
structural_annotation	UHGV-0004497_66	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0004497_72	K03111	76.8	5.1e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004497_72	phrog_44	61.3	2.7e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_72	UniRef90_R6E5D7	95.9	4.59e-23	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004497_72	309801.trd_1248	67.4	0.0000000000023	Single-strand binding protein family	N/A
Pfam	UHGV-0004497_72	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004497_72	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004497_72	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004497_72	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_74	phrog_434	225.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004497_74	UniRef90_J9BW10	323.0	0	Phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0004497_74	470145.BACCOP_01177	306.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0004497_74	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0004497_74	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0004497_74	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0004497_74	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0004497_75	phrog_3657	186.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0004497_75	1211813.CAPH01000015_gene728	279.0	0	N/A	N/A
structural_annotation	UHGV-0004497_75	PF04404	N/A	N/A	N/A	N/A
COG	UHGV-0004497_77	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A