UHGV-0004746 (vOTU-013714)

Viral Genome: UHGV-0004746

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004746
vOTU ID	vOTU-013714
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_3_2391__NODE_2_length_512662_cov_18.497252_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.82 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.52
Jumbo phage	No

Genome content
Genome length (bp)	34,098
GC content	45.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	592.64
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004746_2	phrog_31631	74.5	7.7e-22	N/A	unknown function
KOfam	UHGV-0004746_3	K19118	94.7	9e-28	csd2, cas7; CRISPR-associated protein Csd2	N/A
UniRef90	UHGV-0004746_3	UniRef90_A0A415G2Y9	184.0	0	Type I-C CRISPR-associated protein Cas7/Csd2	N/A
eggNOG-mapper	UHGV-0004746_3	411469.EUBHAL_00737	184.0	0	CRISPR-associated protein Cas7	N/A
PADLOC	UHGV-0004746_3	cas_Csd2	108.9	9.5e-32	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
Pfam	UHGV-0004746_3	PF05107	N/A	N/A	CRISPR-associated protein Cas7	Cas_Cas7
COG	UHGV-0004746_3	COG3649	N/A	N/A	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	N/A
KOfam	UHGV-0004746_4	K02395	83.7	3.5e-24	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0004746_4	phrog_3513	156.8	0	endolysin	lysis
UniRef90	UHGV-0004746_4	UniRef90_R7N6M9	345.0	0	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004746_4	411902.CLOBOL_03862	160.0	4.2039e-45	COG NOG16320 non supervised orthologous group	N/A
Pfam	UHGV-0004746_4	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0004746_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0004746_4	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0004746_4	PF01471,PF01832,NF038016,COG1705,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_5	phrog_34925	108.2	3.3e-32	N/A	unknown function
UniRef90	UHGV-0004746_5	UniRef90_A0A6L5T8S5	108.0	1.66e-28	Aminopeptidase	N/A
eggNOG-mapper	UHGV-0004746_5	411459.RUMOBE_01083	102.0	4.87e-27	N/A	N/A
structural_annotation	UHGV-0004746_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_8	phrog_9428	116.7	6.7e-35	N/A	unknown function
UniRef90	UHGV-0004746_8	UniRef90_A0A414DFF5	107.0	7.09e-28	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0004746_8	411470.RUMGNA_00253	107.0	1.63e-28	N/A	N/A
PHROG	UHGV-0004746_9	phrog_1220	233.3	0	head protein	head and packaging
eggNOG-mapper	UHGV-0004746_9	411468.CLOSCI_00537	164.0	1.13001e-41	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0004746_10	phrog_538	295.6	0	minor tail protein	tail
UniRef90	UHGV-0004746_10	UniRef90_UPI001D05F61F	390.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0004746_10	411468.CLOSCI_00538	286.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0004746_10	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0004746_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_11	phrog_33	60.9	2.9e-17	distal tail protein Dit	tail
UniRef90	UHGV-0004746_11	UniRef90_A0A174WNI0	483.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0004746_11	411468.CLOSCI_00539	224.0	0	COG NOG18823 non supervised orthologous group	N/A
Pfam	UHGV-0004746_11	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0004746_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0004746_11	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_12	phrog_6900	231.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0004746_12	UniRef90_A0A174WW30	902.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0004746_12	1123309.AQYB01000018_gene819	308.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0004746_12	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0004746_12	PF16591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004746_13	1219626.HMPREF1639_07460	62.0	0.00000000000584	N/A	N/A
eggNOG-mapper	UHGV-0004746_14	411468.CLOSCI_00542	55.1	0.0000000437	N/A	N/A
structural_annotation	UHGV-0004746_14	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_15	phrog_2175	76.0	6.1e-22	protein with Ig domain	other
eggNOG-mapper	UHGV-0004746_15	588581.Cpap_1267	171.0	0	N/A	N/A
structural_annotation	UHGV-0004746_16	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004746_17	UniRef90_A0A315Y0Y7	65.1	0.0000000000913	Bacteriophage HK97-gp10 putative tail-component	N/A
eggNOG-mapper	UHGV-0004746_17	1123314.AUIO01000016_gene844	52.4	0.000000752	N/A	N/A
structural_annotation	UHGV-0004746_17	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_18	phrog_19734	62.0	9.5e-18	N/A	unknown function
UniRef90	UHGV-0004746_18	UniRef90_UPI001EE7A060	93.6	2.92e-22	phage head closure protein	N/A
eggNOG-mapper	UHGV-0004746_18	349161.Dred_2602	58.5	0.0000000024	N/A	N/A
PHROG	UHGV-0004746_19	phrog_749	70.3	2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0004746_19	349161.Dred_2603	67.4	0.000000000000389	N/A	N/A
PHROG	UHGV-0004746_20	phrog_10	110.9	1.1e-32	major head protein	head and packaging
UniRef90	UHGV-0004746_20	UniRef90_A0A174WT45	827.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0004746_20	349161.Dred_2604	367.0	0	Phage capsid family	N/A
Pfam	UHGV-0004746_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0004746_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0004746_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0004746_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0004746_21	K01358	124.3	1.3e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0004746_21	phrog_94	206.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0004746_21	UniRef90_A0A174WNU6	469.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0004746_21	1235792.C808_00085	230.0	0	Clp protease	N/A
Pfam	UHGV-0004746_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0004746_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0004746_21	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_22	phrog_12	103.2	1.9e-30	portal protein	head and packaging
UniRef90	UHGV-0004746_22	UniRef90_A0A174WNT7	763.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0004746_22	1211817.CCAT010000053_gene2130	301.0	0	Phage portal protein	N/A
Pfam	UHGV-0004746_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0004746_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0004746_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0004746_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_23	phrog_9	282.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004746_23	UniRef90_A0A174WNS7	1087.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0004746_23	1211817.CCAT010000053_gene2129	536.0	0	Phage Terminase	N/A
Pfam	UHGV-0004746_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0004746_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0004746_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0004746_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_24	phrog_5110	101.0	6.3e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0004746_24	UniRef90_UPI001D06BD2A	202.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0004746_24	349161.Dred_2608	119.0	2.7e-33	N/A	N/A
Pfam	UHGV-0004746_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0004746_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_25	phrog_119	64.7	1.4e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004746_25	UniRef90_R7R3Y9	228.0	0	Putative restriction endonuclease	N/A
eggNOG-mapper	UHGV-0004746_25	768710.DesyoDRAFT_1275	101.0	3.8e-26	HNH nucleases	N/A
Pfam	UHGV-0004746_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0004746_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0004746_26	K03111	121.5	1.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004746_26	phrog_44	132.0	4.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004746_26	UniRef90_A0A174WSZ5	272.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004746_26	411474.COPEUT_01783	168.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0004746_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004746_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004746_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0004746_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004746_26	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0004746_29	K03497	51.3	0.000000000000023	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0004746_29	phrog_15982	160.9	0	N/A	unknown function
UniRef90	UHGV-0004746_29	UniRef90_A0A174WNM1	560.0	0	ParB-like nuclease domain	N/A
eggNOG-mapper	UHGV-0004746_29	411902.CLOBOL_03889	273.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0004746_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0004746_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0004746_29	PF02195,PF07506,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0004746_30	K03496	189.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0004746_30	phrog_164	157.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004746_30	UniRef90_A0A174WWX6	419.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0004746_30	642492.Clole_0729	211.0	0	AAA domain	N/A
Pfam	UHGV-0004746_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0004746_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0004746_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_31	phrog_824	143.4	5.60519e-43	N/A	unknown function
UniRef90	UHGV-0004746_31	UniRef90_R7R192	338.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004746_31	397288.C806_00096	152.0	9.80909e-45	VRR_NUC	N/A
Pfam	UHGV-0004746_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0004746_31	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_33	phrog_13202	44.2	0.0000000000023	N/A	unknown function
PHROG	UHGV-0004746_34	phrog_3584	168.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004746_34	1232452.BAIB02000007_gene1647	317.0	0	N/A	N/A
structural_annotation	UHGV-0004746_34	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_35	phrog_24368	53.7	0.0000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0004746_35	742741.HMPREF9475_00412	52.0	0.0000022	N/A	N/A
PHROG	UHGV-0004746_36	phrog_24386	119.5	2.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0004746_36	411902.CLOBOL_03898	126.0	1.15e-35	phosphatase activity	N/A
COG	UHGV-0004746_36	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
PHROG	UHGV-0004746_38	phrog_26861	91.6	7.6e-27	N/A	unknown function
UniRef90	UHGV-0004746_38	UniRef90_A0A174WND2	270.0	0	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-0004746_38	1195236.CTER_4948	95.5	2.34e-21	PFAM single-strand binding protein	N/A
Pfam	UHGV-0004746_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0004746_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004746_38	PF00436,PF11506,MF_00984,NF004476,COG0629,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_40	phrog_20014	114.7	3.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0004746_40	411468.CLOSCI_01473	99.4	6.13e-26	N/A	N/A
KOfam	UHGV-0004746_41	K00558	171.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0004746_41	phrog_116	187.9	0	DNA methyltransferase	other
UniRef90	UHGV-0004746_41	UniRef90_A0A3R6DF97	509.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0004746_41	397290.C810_00394	406.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0004746_41	MTase_II_00058	169.7	0	Type II methyltransferase	RM
Pfam	UHGV-0004746_41	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0004746_41	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0004746_41	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0004746_41	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0004746_43	phrog_6058	70.1	1.8e-20	N/A	unknown function
UniRef90	UHGV-0004746_43	UniRef90_A0A0U9H7T0	75.9	1.09e-16	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0004746_43	411468.CLOSCI_01465	90.1	4.68e-23	N/A	N/A
structural_annotation	UHGV-0004746_43	PF12728,TIGR01764	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004746_48	1235799.C818_02650	226.0	0	N/A	N/A
UniRef90	UHGV-0004746_50	UniRef90_C7G6N8	106.0	1.8e-28	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0004746_50	1226325.HMPREF1548_00560	65.5	0.00000000000056	N/A	N/A
Pfam	UHGV-0004746_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0004746_50	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0004746_51	K22300	63.2	5.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0004746_51	phrog_8	60.9	3.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004746_51	UniRef90_UPI001B3918A3	119.0	5.18e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0004746_51	97138.C820_00275	97.1	2.41e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0004746_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004746_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004746_51	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004746_52	483216.BACEGG_01163	49.3	0.0000002	N/A	N/A
KOfam	UHGV-0004746_53	K14059	116.7	3.3e-34	int; integrase	N/A
PHROG	UHGV-0004746_53	phrog_1	143.7	1.60028e-42	integrase	integration and excision
UniRef90	UHGV-0004746_53	UniRef90_A0A174WSA4	621.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0004746_53	931626.Awo_c31360	327.0	0	Phage integrase family	N/A
Pfam	UHGV-0004746_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0004746_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0004746_53	PF00589,MF_01808,NF002331,COG4973	N/A	N/A	N/A	N/A