UHGV-0004773 (vOTU-082558)

Viral Genome: UHGV-0004773

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004773
vOTU ID	vOTU-082558
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_1_1540__NODE_563_length_57799_cov_15.544836_1
Associated BioSample	SAMEA4765830
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.64 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9756
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.36
Jumbo phage	No

Genome content
Genome length (bp)	43,154
GC content	51.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	88%
Average CDS length (bps)	575.14
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0004773_1	K06400	382.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0004773_1	phrog_95	371.7	0	integrase	integration and excision
UniRef90	UHGV-0004773_1	UniRef90_UPI00164E9A6A	472.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0004773_1	445972.ANACOL_03320	343.0	0	N/A	N/A
Pfam	UHGV-0004773_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0004773_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0004773_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0004773_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0004773_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_2	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_3	phrog_8	54.8	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004773_3	UniRef90_A0A845R7R6	93.6	6.39e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004773_3	202752.JL53_00610	63.5	0.000000000015	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0004773_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0004773_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004773_3	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_5	phrog_8	40.2	0.000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004773_5	UniRef90_UPI0011C8DBD0	57.4	0.00000000489	bacteriophage CI repressor	N/A
eggNOG-mapper	UHGV-0004773_5	397291.C804_05804	53.9	0.0000000248	TRANSCRIPTIONal	N/A
Pfam	UHGV-0004773_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004773_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0004773_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_11	phrog_434	298.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_11	UniRef90_A0A3D3XZF3	273.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0004773_11	1121344.JHZO01000003_gene985	271.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0004773_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0004773_11	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0004773_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0004773_11	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0004773_12	K07455	280.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0004773_12	phrog_148	255.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_12	UniRef90_A0A1Y4W4R3	342.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0004773_12	1226322.HMPREF1545_00015	342.0	0	RecT family	N/A
Pfam	UHGV-0004773_12	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0004773_12	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0004773_12	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0004773_12	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0004773_13	K03111	130.7	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004773_13	phrog_44	135.0	5e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_13	UniRef90_A0A1C5QDM6	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004773_13	1226322.HMPREF1545_04080	155.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0004773_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004773_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004773_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0004773_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004773_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_14	phrog_190	119.6	2.4e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_14	UniRef90_A0A3R6WN18	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004773_14	1236514.BAKL01000051_gene3708	91.7	2.34e-22	N/A	N/A
Pfam	UHGV-0004773_14	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0004773_14	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_15	phrog_4973	68.0	1.2e-19	N/A	unknown function
UniRef90	UHGV-0004773_15	UniRef90_UPI001D0904CC	98.2	2.36e-25	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0004773_15	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0004773_15	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_16	phrog_599	46.8	0.00000000000059	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004773_16	UniRef90_A0A412KFB8	65.1	0.00000000000515	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0004773_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0004773_16	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0004773_16	PF13211	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_17	phrog_5810	77.6	1.3e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_17	UniRef90_A0A417QFV0	160.0	7.00649e-45	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004773_17	742740.HMPREF9474_03117	212.0	0	N/A	N/A
KOfam	UHGV-0004773_18	K02315	177.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0004773_18	phrog_50	162.5	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_18	UniRef90_A0A3A5TME7	230.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0004773_18	665950.HMPREF1025_02330	196.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0004773_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0004773_18	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0004773_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0004773_18	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_20	phrog_757	52.4	0.0000000000000083	DNA methyltransferase	other
UniRef90	UHGV-0004773_20	UniRef90_A0A7J2R6L5	69.7	0.00000000000000736	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0004773_20	748224.HMPREF9436_03069	103.0	4.7e-27	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0004773_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0004773_21	phrog_757	97.6	1.1e-28	DNA methyltransferase	other
UniRef90	UHGV-0004773_21	UniRef90_A0A413KZI1	164.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0004773_21	742733.HMPREF9469_01835	158.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0004773_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0004773_22	K21919	138.0	7.39998e-41	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0004773_22	phrog_9562	82.6	4.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0004773_22	1226322.HMPREF1545_00011	117.0	8.94e-30	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0004773_22	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0004773_22	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0004773_22	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_22	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_23	phrog_3136	122.0	2.2e-36	N/A	unknown function
UniRef90	UHGV-0004773_23	UniRef90_UPI001C02A61B	118.0	1.87e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0004773_23	1235792.C808_00630	53.1	0.00000775	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0004773_23	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0004773_23	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_24	phrog_924	51.9	0.000000000000013	N/A	unknown function
UniRef90	UHGV-0004773_24	UniRef90_A0A6C0R0N0	57.4	0.00000000752	N/A	N/A
Pfam	UHGV-0004773_24	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0004773_26	PF09889,MF_00649,COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004773_28	UniRef90_UPI001D07B715	132.0	7.36e-36	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0004773_28	1235793.C809_00539	55.8	0.000000437	N/A	N/A
Pfam	UHGV-0004773_28	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
eggNOG-mapper	UHGV-0004773_31	397290.C810_01347	50.8	0.0000000967	N/A	N/A
structural_annotation	UHGV-0004773_31	PF18267	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_33	phrog_4273	62.8	3.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0004773_33	1415147.V5Q8T2_9CAUD	52.4	0.0000057	N/A	N/A
UniRef90	UHGV-0004773_35	UniRef90_A0A7C6Y3R2	67.0	0.000000000000666	Helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0004773_35	PF20075,TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_37	phrog_38	189.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004773_37	UniRef90_A0A318EQM2	470.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0004773_37	1123263.AUKY01000015_gene1608	523.0	0	chromosome segregation	N/A
COG	UHGV-0004773_37	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_37	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0004773_38	K07741	135.6	7.6e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-0004773_38	phrog_130	277.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0004773_38	UniRef90_UPI00041EF200	309.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0004773_38	573061.Clocel_3580	295.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0004773_38	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0004773_38	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0004773_38	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0004773_38	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_40	phrog_64	200.2	0	portal protein	head and packaging
UniRef90	UHGV-0004773_40	UniRef90_UPI001C02F349	653.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0004773_40	1123263.AUKY01000015_gene1609	407.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0004773_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0004773_40	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_42	phrog_1328	112.5	3.1e-33	major head protein	head and packaging
UniRef90	UHGV-0004773_42	UniRef90_UPI00164DD2D5	553.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004773_42	665956.HMPREF1032_03619	228.0	0	N/A	N/A
Pfam	UHGV-0004773_42	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0004773_42	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004773_43	UniRef90_UPI00164E20D5	142.0	4.98021e-42	phage head-tail connector protein	N/A
structural_annotation	UHGV-0004773_43	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_44	phrog_374	215.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004773_44	UniRef90_C9KJA8	194.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0004773_44	632245.CLP_1610	202.0	0	N/A	N/A
structural_annotation	UHGV-0004773_44	PF18337	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004773_45	1121866.AUGK01000003_gene1432	87.0	3.17e-20	N/A	N/A
eggNOG-mapper	UHGV-0004773_46	1298920.KI911353_gene2654	79.0	3.99e-16	N/A	N/A
structural_annotation	UHGV-0004773_47	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_48	phrog_158	47.6	0.00000000000028	major tail protein	tail
UniRef90	UHGV-0004773_48	UniRef90_D7GNW1	140.0	2.95e-40	Phage tail protein	N/A
eggNOG-mapper	UHGV-0004773_48	1158607.UAU_01767	53.5	0.00000066	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0004773_48	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004773_49	UniRef90_A0A496N7D3	94.4	7.23e-23	N/A	N/A
eggNOG-mapper	UHGV-0004773_49	1123263.AUKY01000015_gene1618	73.9	0.00000000000000127	N/A	N/A
Pfam	UHGV-0004773_49	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0004773_49	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004773_50	1121333.JMLH01000047_gene1011	67.4	0.00000000000103	N/A	N/A
PHROG	UHGV-0004773_51	phrog_1535	141.5	6.09985e-42	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0004773_51	1121866.AUGK01000003_gene1437	249.0	0	phage tail tape measure protein	N/A
COG	UHGV-0004773_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0004773_52	phrog_1194	54.3	0.0000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0004773_52	1280692.AUJL01000025_gene2069	55.8	0.0000000268	N/A	N/A
structural_annotation	UHGV-0004773_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_53	phrog_6616	113.0	1.3e-33	tail protein	tail
eggNOG-mapper	UHGV-0004773_53	1507.HMPREF0262_00217	74.3	0.0000000000179	N/A	N/A
PHROG	UHGV-0004773_57	phrog_19280	84.6	4.2e-25	N/A	unknown function
UniRef90	UHGV-0004773_57	UniRef90_A0A416HFD1	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004773_57	1160721.RBI_I01569	110.0	8.53e-24	N/A	N/A
Pfam	UHGV-0004773_57	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0004773_57	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_59	phrog_134	66.7	2.5e-19	N/A	unknown function
UniRef90	UHGV-0004773_59	UniRef90_A0A3E5A4L1	59.3	0.0000000000854	XkdX family protein	N/A
eggNOG-mapper	UHGV-0004773_59	1297617.JPJD01000099_gene2170	58.5	0.0000000000261	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0004773_59	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0004773_59	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0004773_59	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0004773_60	K08640	79.8	5.9e-23	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0004773_60	phrog_894	44.3	0.0000000000024	endolysin	lysis
UniRef90	UHGV-0004773_60	UniRef90_UPI001C11DE07	117.0	3.24e-29	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0004773_60	931626.Awo_c26840	108.0	6.7e-27	Peptidase M15	N/A
Pfam	UHGV-0004773_60	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0004773_60	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0004773_60	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_60	PF05951,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0004773_61	phrog_4105	96.0	2.5e-28	N/A	unknown function
UniRef90	UHGV-0004773_61	UniRef90_A0A8D9UHA9	125.0	1.27e-35	Holin protein	N/A
eggNOG-mapper	UHGV-0004773_61	411460.RUMTOR_01326	135.0	3.85e-40	N/A	N/A
PHROG	UHGV-0004773_62	phrog_10091	106.2	2.3e-31	holin	lysis
UniRef90	UHGV-0004773_62	UniRef90_A0A1C5RHU1	127.0	1.15e-36	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-0004773_62	97139.C824_05950	118.0	8.33e-34	Bacteriophage holin	N/A
Pfam	UHGV-0004773_62	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0004773_62	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0004773_62	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_62	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004773_63	PF01047,NF001066,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004773_66	UniRef90_A0A843GWV6	85.9	9.9e-20	Rubrerythrin domain-containing protein	N/A