UHGV-0004859 (vOTU-105235)

Viral Genome: UHGV-0004859

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004859
vOTU ID	vOTU-105235
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_I_3_1743__NODE_471_length_86628_cov_33.884692_1
Associated BioSample	SAMEA4766023
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.29
Jumbo phage	No

Genome content
Genome length (bp)	37,212
GC content	55.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	92%
Average CDS length (bps)	623.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004859_1	phrog_1863	68.2	7.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0004859_1	693746.OBV_18260	110.0	1.11e-30	N/A	N/A
PHROG	UHGV-0004859_2	phrog_6616	62.5	9.8e-35	tail protein	tail
eggNOG-mapper	UHGV-0004859_2	445971.ANASTE_00088	92.0	1.61e-16	N/A	N/A
structural_annotation	UHGV-0004859_2	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_3	phrog_1194	114.2	6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0004859_3	1400520.LFAB_05290	79.3	1.84e-17	N/A	N/A
Pfam	UHGV-0004859_3	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0004859_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_4	phrog_1535	146.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0004859_4	1304866.K413DRAFT_3046	103.0	2.63e-19	N/A	N/A
COG	UHGV-0004859_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0004859_4	PF09325	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004859_5	1121333.JMLH01000047_gene1011	66.6	0.00000000000413	N/A	N/A
UniRef90	UHGV-0004859_6	UniRef90_UPI0018A0054C	134.0	7.32e-39	N/A	N/A
eggNOG-mapper	UHGV-0004859_6	1123263.AUKY01000015_gene1618	82.4	5.61e-19	N/A	N/A
Pfam	UHGV-0004859_6	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0004859_6	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_7	phrog_158	55.4	0.0000000000000013	major tail protein	tail
UniRef90	UHGV-0004859_7	UniRef90_D7GQN5	199.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0004859_7	1232453.BAIF02000058_gene1634	103.0	1.53e-26	N/A	N/A
structural_annotation	UHGV-0004859_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004859_8	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004859_9	UniRef90_UPI001BBD4500	54.3	0.0000053	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0004859_9	1298920.KI911353_gene2654	62.8	0.000000000768	N/A	N/A
eggNOG-mapper	UHGV-0004859_10	1121866.AUGK01000003_gene1432	76.6	3.17e-16	N/A	N/A
UniRef90	UHGV-0004859_11	UniRef90_UPI001898B4B4	114.0	1.03e-30	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0004859_11	1298920.KI911353_gene2658	48.5	0.0000077	N/A	N/A
Pfam	UHGV-0004859_11	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0004859_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_13	phrog_247	263.8	0	major head protein	head and packaging
UniRef90	UHGV-0004859_13	UniRef90_A0A3D0LY55	384.0	0	Coat protein	N/A
eggNOG-mapper	UHGV-0004859_13	903814.ELI_3208	313.0	0	N/A	N/A
Pfam	UHGV-0004859_13	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0004859_13	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_15	phrog_2468	72.7	4.8e-21	head morphogenesis	head and packaging
UniRef90	UHGV-0004859_15	UniRef90_A0A414B033	147.0	1.6e-40	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0004859_15	1123263.AUKY01000015_gene1610	117.0	9.85e-30	cell adhesion	N/A
Pfam	UHGV-0004859_15	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0004859_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004859_15	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_16	phrog_64	247.6	0	portal protein	head and packaging
UniRef90	UHGV-0004859_16	UniRef90_A0A414B012	615.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004859_16	1121866.AUGK01000003_gene1429	420.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0004859_16	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0004859_16	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_17	phrog_38	158.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004859_17	UniRef90_UPI00164E3A67	765.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004859_17	1298920.KI911353_gene2682	288.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0004859_17	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0004859_17	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004859_17	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_18	phrog_3675	46.0	0.00000000000076	N/A	unknown function
UniRef90	UHGV-0004859_18	UniRef90_A0A1M7JY59	79.3	5.67e-17	YjcQ protein	N/A
eggNOG-mapper	UHGV-0004859_18	1235802.C823_04879	77.8	3.53e-17	YjcQ protein	N/A
Pfam	UHGV-0004859_18	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0004859_18	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004859_19	UniRef90_A0A1Q6L0U5	122.0	2.78e-33	SHOCT domain-containing protein	N/A
KOfam	UHGV-0004859_20	K06400	209.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0004859_20	phrog_95	199.8	0	integrase	integration and excision
UniRef90	UHGV-0004859_20	UniRef90_A0A3D4G6V8	348.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0004859_20	697329.Rumal_3466	237.0	0	resolvase	N/A
Pfam	UHGV-0004859_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0004859_20	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0004859_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0004859_20	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0004859_25	K03466	326.6	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0004859_25	phrog_1358	229.3	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004859_25	UniRef90_A0A1F7N4E5	213.0	0	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-0004859_25	1169143.KB911034_gene954	212.0	0	Belongs to the FtsK SpoIIIE SftA family	N/A
PADLOC	UHGV-0004859_25	SspH_00004	172.3	0	SspH	SSP
Pfam	UHGV-0004859_25	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0004859_25	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
PHROG	UHGV-0004859_26	phrog_606	42.6	0.0000000000052	terminase small subunit	head and packaging
UniRef90	UHGV-0004859_26	UniRef90_UPI001D08D6B6	115.0	6.71e-29	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0004859_26	877421.AUJT01000054_gene66	75.1	0.00000000000001	N/A	N/A
Pfam	UHGV-0004859_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0004859_26	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0004859_27	K14440	109.6	8.8e-33	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0004859_27	phrog_62	385.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_27	UniRef90_A0A4Z0QKK3	524.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0004859_27	411902.CLOBOL_00156	518.0	0	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	N/A
PADLOC	UHGV-0004859_27	DpdE_00012	51.1	0.0000000000000021	DpdE	DPD
Pfam	UHGV-0004859_27	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-0004859_27	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0004859_27	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_29	phrog_6721	291.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0004859_29	904296.HMPREF9124_0807	236.0	0	N/A	N/A
structural_annotation	UHGV-0004859_29	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004859_30	UniRef90_A0A316Q6P3	88.6	2.15e-20	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004859_30	552398.HMPREF0866_04581	53.9	0.000000097	Putative helix-turn-helix protein, YlxM / p13 like	N/A
Pfam	UHGV-0004859_30	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0004859_30	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-0004859_32	phrog_474	115.6	5.2e-34	phosphofructokinase	other
eggNOG-mapper	UHGV-0004859_32	1203606.HMPREF1526_00237	94.4	1.16e-21	N/A	N/A
Pfam	UHGV-0004859_32	PF19905	N/A	N/A	N/A	DUF6378
PHROG	UHGV-0004859_35	phrog_229	133.3	1.6e-39	MazG-like pyrophosphatase	other
UniRef90	UHGV-0004859_35	UniRef90_D7GNT7	151.0	1.4013e-45	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-0004859_35	428125.CLOLEP_01391	136.0	3.46999e-40	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0004859_35	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0004859_35	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0004859_35	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_38	phrog_93	62.3	7.8e-18	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_38	UniRef90_A0A559U336	103.0	1.16e-26	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004859_38	320836.Q4ZD25_9CAUD	95.5	2.07e-24	hydrolase activity, acting on ester bonds	N/A
structural_annotation	UHGV-0004859_38	PF01974,MF_01490,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_39	phrog_256	1051.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_39	UniRef90_UPI00101C9F44	799.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0004859_39	748727.CLJU_c36530	754.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0004859_39	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0004859_39	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0004859_39	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0004859_40	K02334	834.4	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0004859_40	phrog_17	407.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_40	UniRef90_UPI001C3F44D6	627.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0004859_40	1216932.CM240_0655	610.0	0	DNA polymerase	N/A
Pfam	UHGV-0004859_40	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0004859_40	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0004859_40	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0004859_40	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_41	phrog_112	166.6	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_41	UniRef90_UPI001D063040	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004859_41	394503.Ccel_3065	127.0	1.82e-34	N/A	N/A
Pfam	UHGV-0004859_41	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0004859_41	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0004859_42	K07465	44.5	0.00000000000014	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0004859_42	phrog_69	309.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004859_42	UniRef90_UPI00040D794D	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004859_42	689781.AUJX01000031_gene132	263.0	0	N/A	N/A
Pfam	UHGV-0004859_42	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0004859_42	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0004859_42	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_43	phrog_408	43.4	0.0000000000042	N/A	unknown function
Pfam	UHGV-0004859_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0004859_44	PF01381,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004859_51	UniRef90_UPI001C03922B	69.7	0.0000000000000346	excisionase family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004859_51	1291050.JAGE01000002_gene3380	63.2	0.00000000000309	N/A	N/A
structural_annotation	UHGV-0004859_51	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0004859_52	phrog_478	124.5	4.1e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0004859_52	UniRef90_R6R5K5	142.0	3.36998e-41	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0004859_52	1111121.HMPREF1247_0834	150.0	5.60519e-45	N/A	N/A
PHROG	UHGV-0004859_54	phrog_7940	225.6	0	N/A	unknown function
UniRef90	UHGV-0004859_54	UniRef90_UPI001379CFC9	289.0	0	toxin Bro	N/A
eggNOG-mapper	UHGV-0004859_54	546271.Selsp_1341	240.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0004859_54	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0004859_54	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0004859_54	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0004859_55	K22300	56.1	8.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0004859_55	phrog_2328	45.8	0.00000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0004859_55	UniRef90_A0A173RCH7	78.2	0.00000000000000221	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
Pfam	UHGV-0004859_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004859_55	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A