UHGV-0004953 (vOTU-125354)

Viral Genome: UHGV-0004953

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0004953
vOTU ID	vOTU-125354
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_12_1619__NODE_51_length_167897_cov_19.725825_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.76 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25
Jumbo phage	No

Genome content
Genome length (bp)	33,850
GC content	40.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	93%
Average CDS length (bps)	591.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004953_1	phrog_199	76.3	3.3e-22	holin	lysis
UniRef90	UHGV-0004953_1	UniRef90_UPI001EE92C08	190.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0004953_1	1235793.C809_01935	179.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0004953_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0004953_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0004953_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0004953_1	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004953_2	476272.RUMHYD_01994	58.9	0.000000619	N/A	N/A
PHROG	UHGV-0004953_3	phrog_6616	294.7	0	tail protein	tail
UniRef90	UHGV-0004953_3	UniRef90_A0A412RR71	226.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0004953_3	33035.JPJF01000043_gene1002	185.0	0	N/A	N/A
structural_annotation	UHGV-0004953_3	PF05954,PF16532,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_4	phrog_1194	40.1	0.000000000051	N/A	unknown function
structural_annotation	UHGV-0004953_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_5	phrog_1535	143.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0004953_5	1140002.I570_01433	102.0	3.63e-19	SLT domain	N/A
COG	UHGV-0004953_5	COG3953	N/A	N/A	SLT domain protein	N/A
structural_annotation	UHGV-0004953_5	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_6	phrog_706	133.6	1.3e-39	N/A	unknown function
UniRef90	UHGV-0004953_6	UniRef90_UPI001439D6D9	209.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0004953_6	1449050.JNLE01000003_gene3882	187.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0004953_6	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0004953_6	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_7	phrog_11299	76.9	3.1e-22	N/A	unknown function
structural_annotation	UHGV-0004953_7	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_8	phrog_3099	139.7	1.6e-41	N/A	unknown function
eggNOG-mapper	UHGV-0004953_8	33035.JPJF01000106_gene3126	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0004953_8	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_9	phrog_3266	63.8	2.3e-18	tail completion	connector
eggNOG-mapper	UHGV-0004953_9	1120746.CCNL01000014_gene2101	61.2	0.000000000324	N/A	N/A
structural_annotation	UHGV-0004953_9	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_10	phrog_556	75.6	4.4e-22	minor head protein	head and packaging
UniRef90	UHGV-0004953_10	UniRef90_A0A1V6D5Y2	83.6	9.6e-18	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0004953_10	986075.CathTA2_0700	55.1	0.0000000723	Minor capsid protein	N/A
Pfam	UHGV-0004953_10	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0004953_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_11	phrog_3366	80.4	2.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0004953_11	33035.JPJF01000106_gene3129	57.4	0.00000000657	N/A	N/A
structural_annotation	UHGV-0004953_11	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_12	phrog_541	83.0	3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0004953_12	476272.RUMHYD_01778	86.7	1.69e-19	N/A	N/A
PHROG	UHGV-0004953_13	phrog_247	265.7	0	major head protein	head and packaging
UniRef90	UHGV-0004953_13	UniRef90_A0A316M710	513.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0004953_13	536233.CLO_0886	407.0	0	N/A	N/A
COG	UHGV-0004953_13	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0004953_13	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_14	phrog_194	79.9	4.1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0004953_14	UniRef90_UPI001D14C9C8	133.0	1.62e-35	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0004953_14	476272.RUMHYD_01775	120.0	2.78e-31	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0004953_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
eggNOG-mapper	UHGV-0004953_15	1235799.C818_04221	50.4	0.000000162	YjcQ protein	N/A
Pfam	UHGV-0004953_15	PF09639	N/A	N/A	YjcQ protein	YjcQ
PHROG	UHGV-0004953_17	phrog_581	255.4	0	minor head protein	head and packaging
UniRef90	UHGV-0004953_17	UniRef90_A0A6L5YIK0	312.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0004953_17	642492.Clole_0816	228.0	0	N/A	N/A
Pfam	UHGV-0004953_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0004953_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004953_17	PF06152,PF18812	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_18	phrog_533	290.0	0	portal protein	head and packaging
UniRef90	UHGV-0004953_18	UniRef90_A0A3D2KHB8	564.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0004953_18	476272.RUMHYD_01758	411.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0004953_18	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0004953_19	K06909	116.1	3.9e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004953_19	phrog_10250	163.0	0	N/A	unknown function
UniRef90	UHGV-0004953_19	UniRef90_A0A3D2KEK1	668.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004953_19	397290.C810_05187	558.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0004953_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0004953_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0004953_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004953_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_20	phrog_2412	95.0	6.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0004953_20	1125712.HMPREF1316_1524	74.3	0.000000000000013	N/A	N/A
KOfam	UHGV-0004953_23	K03798	109.7	2.1e-32	ftsH, hflB; cell division protease FtsH [EC:3.4.24.-]	N/A
PHROG	UHGV-0004953_23	phrog_3757	194.1	0	N/A	unknown function
UniRef90	UHGV-0004953_23	UniRef90_A0A174W6K6	228.0	0	ATP-dependent zinc metalloprotease FtsH	N/A
eggNOG-mapper	UHGV-0004953_23	742740.HMPREF9474_03133	226.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0004953_23	IetA_00002	162.1	0	NA	ietAS
Pfam	UHGV-0004953_23	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0004953_23	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
KOfam	UHGV-0004953_24	K01356	60.1	5.9e-17	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0004953_24	phrog_24920	45.8	0.0000000000009	N/A	unknown function
UniRef90	UHGV-0004953_24	UniRef90_A0A0F0C7S4	104.0	2.15e-27	LexA repressor	N/A
eggNOG-mapper	UHGV-0004953_24	696281.Desru_2000	65.5	0.0000000000091	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0004953_24	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0004953_24	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0004953_25	phrog_10714	45.6	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0004953_25	UniRef90_R6PMU2	51.2	0.00000304	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0004953_25	537007.BLAHAN_05460	48.1	0.00000636	N/A	N/A
eggNOG-mapper	UHGV-0004953_26	411461.DORFOR_01156	236.0	0	N/A	N/A
PHROG	UHGV-0004953_28	phrog_478	111.8	3.4e-33	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0004953_28	UniRef90_A0A373Q857	171.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0004953_28	1111121.HMPREF1247_0834	93.2	1.41e-22	N/A	N/A
KOfam	UHGV-0004953_29	K00558	224.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0004953_29	phrog_116	265.3	0	DNA methyltransferase	other
UniRef90	UHGV-0004953_29	UniRef90_A0A1C5S2H5	847.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0004953_29	1235800.C819_02255	684.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0004953_29	MTase_II_00020	107.7	6.2e-35	Type II methyltransferase	RM
Pfam	UHGV-0004953_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0004953_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0004953_29	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0004953_31	K03111	140.6	1.6e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004953_31	phrog_44	132.4	3.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004953_31	UniRef90_R5KD39	214.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004953_31	357809.Cphy_3773	198.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0004953_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004953_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004953_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0004953_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004953_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004953_32	UniRef90_UPI001D075241	52.4	0.00000155	N/A	N/A
eggNOG-mapper	UHGV-0004953_32	658655.HMPREF0988_00866	53.5	0.0000000392	N/A	N/A
UniRef90	UHGV-0004953_34	UniRef90_A0A417WAJ1	129.0	2e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0004953_34	1235800.C819_02254	112.0	1.84e-30	HNH nucleases	N/A
UniRef90	UHGV-0004953_35	UniRef90_UPI00156ED5AF	100.0	1.37e-25	N/A	N/A
eggNOG-mapper	UHGV-0004953_35	1256908.HMPREF0373_00667	85.1	1.87e-20	N/A	N/A
Pfam	UHGV-0004953_35	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0004953_35	PF04448	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004953_37	1449050.JNLE01000003_gene3902	56.6	0.000000364	N/A	N/A
Pfam	UHGV-0004953_37	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
PHROG	UHGV-0004953_39	phrog_355	79.9	2.9e-23	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004953_39	UniRef90_A0A3D5LSK2	103.0	1.39e-26	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0004953_39	1095750.HMPREF9970_1671	78.2	2.05e-17	N/A	N/A
Pfam	UHGV-0004953_39	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0004953_39	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0004953_39	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_40	phrog_15077	124.5	0	N/A	unknown function
UniRef90	UHGV-0004953_40	UniRef90_A0A354J797	182.0	0	RNA_pol_A_CTD domain-containing protein	N/A
eggNOG-mapper	UHGV-0004953_40	1298920.KI911353_gene4863	107.0	5.75e-22	N/A	N/A
structural_annotation	UHGV-0004953_40	PF11300,NF033725	N/A	N/A	N/A	N/A
KOfam	UHGV-0004953_41	K03469	62.2	1.1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0004953_41	phrog_531	61.2	1.7e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004953_41	UniRef90_R9MXA6	120.0	4.88e-32	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004953_41	1235800.C819_02257	120.0	8.18e-33	RNase H	N/A
Pfam	UHGV-0004953_41	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0004953_41	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0004953_41	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_42	phrog_3584	146.2	2.00386e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004953_42	1235800.C819_00515	255.0	0	N/A	N/A
structural_annotation	UHGV-0004953_42	PF21578,COG2092	N/A	N/A	N/A	N/A
PHROG	UHGV-0004953_44	phrog_6380	64.0	1.9e-18	DNA methyltransferase	other
UniRef90	UHGV-0004953_44	UniRef90_R7FFM7	134.0	7.58e-37	N-6 DNA Methylase	N/A
eggNOG-mapper	UHGV-0004953_44	1111134.HMPREF1253_0397	122.0	1.28e-31	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0004953_44	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
KOfam	UHGV-0004953_45	K03427	101.0	1.3e-29	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0004953_45	phrog_6380	135.3	3.7e-40	DNA methyltransferase	other
UniRef90	UHGV-0004953_45	UniRef90_UPI00189920FD	283.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0004953_45	349123.Lreu23DRAFT_3877	159.0	2.8026e-45	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
PADLOC	UHGV-0004953_45	MTase_I_00005	85.8	6.9e-25	Type I methyltransferase	RM
Pfam	UHGV-0004953_45	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0004953_45	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
PHROG	UHGV-0004953_46	phrog_6380	85.5	6e-25	DNA methyltransferase	other
UniRef90	UHGV-0004953_46	UniRef90_A0A415MT97	142.0	1.85952e-42	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0004953_46	1095750.HMPREF9970_0171	107.0	1.48e-28	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0004953_46	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
UniRef90	UHGV-0004953_47	UniRef90_UPI001E2BEB0D	62.4	0.0000000000727	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0004953_47	349123.Lreu23DRAFT_3878	60.8	0.00000000013	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0004953_47	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0004953_50	PF20063	N/A	N/A	N/A	N/A
KOfam	UHGV-0004953_53	K22300	54.8	0.0000000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0004953_53	phrog_8	47.2	0.00000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004953_53	UniRef90_A0A4R4FGI2	120.0	8.16e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004953_53	887325.HMPREF0381_0352	96.3	4.74e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0004953_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004953_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004953_53	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A