UHGV-0005485 (vOTU-134563)

Viral Genome: UHGV-0005485

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0005485
vOTU ID	vOTU-134563
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_L_13_1278__NODE_5_length_428512_cov_137.465422_1
Associated BioSample	SAMEA4765731
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.9 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9623
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.39
Jumbo phage	No

Genome content
Genome length (bp)	29,075
GC content	33.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	90%
Average CDS length (bps)	655.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 74.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0005485_1	UniRef90_C9A166	79.0	1.79e-17	Predicted protein	N/A
eggNOG-mapper	UHGV-0005485_1	1104325.M7W_1077	148.0	1.4013e-45	N/A	N/A
UniRef90	UHGV-0005485_2	UniRef90_A0A179ETE7	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005485_2	768486.EHR_09930	251.0	0	N/A	N/A
Pfam	UHGV-0005485_2	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0005485_2	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
structural_annotation	UHGV-0005485_2	PF14015,NF033634	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005485_4	888816.HMPREF9389_2303	65.9	0.00000000026	N/A	N/A
KOfam	UHGV-0005485_6	K07273	127.0	2.1e-37	acm; lysozyme	N/A
PHROG	UHGV-0005485_6	phrog_291	141.8	6.09985e-42	endolysin	lysis
UniRef90	UHGV-0005485_6	UniRef90_UPI0006B15A45	706.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0005485_6	768486.EHR_00550	416.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0005485_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0005485_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0005485_6	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_7	phrog_1299	71.9	6e-21	holin	lysis
UniRef90	UHGV-0005485_7	UniRef90_V5XRV9	79.0	2.63e-17	Holin	N/A
eggNOG-mapper	UHGV-0005485_7	768486.EHR_00555	149.0	1.4013e-45	InterPro IPR009708 Bacteriophage A118, holin	N/A
Pfam	UHGV-0005485_7	PF06946	N/A	N/A	Bacteriophage A118-like holin, Hol118	Phage_holin_5_1
structural_annotation	UHGV-0005485_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_8	phrog_4105	107.5	6.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0005485_8	1158604.I591_00415	183.0	0	N/A	N/A
PHROG	UHGV-0005485_10	phrog_18023	53.0	0.0000000000000038	tail fiber protein	tail
UniRef90	UHGV-0005485_10	UniRef90_UPI0006B1527A	319.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0005485_10	1158604.I591_01755	301.0	0	GDSL-like Lipase/Acylhydrolase	N/A
COG	UHGV-0005485_10	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0005485_11	K19304	136.0	2.1e-40	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0005485_11	phrog_1067	739.6	0	minor head protein	head and packaging
UniRef90	UHGV-0005485_11	UniRef90_A0A7U8IKH4	1809.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0005485_11	1158604.I591_00413	1596.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0005485_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0005485_11	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0005485_11	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
NCBIFam	UHGV-0005485_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0005485_11	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0005485_11	PF14594,PF01551,PF18013,TIGR01665,NF040883,COG4926,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_12	phrog_33	78.5	1.4e-22	distal tail protein Dit	tail
UniRef90	UHGV-0005485_12	UniRef90_A0A1L2GWH5	499.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0005485_12	1158604.I591_00412	464.0	0	tail component	N/A
COG	UHGV-0005485_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0005485_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_13	phrog_1686	205.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0005485_13	UniRef90_A0A2C9X4D2	1047.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005485_13	1158604.I591_00411	1162.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0005485_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0005485_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0005485_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0005485_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_14	phrog_187	61.5	1.4e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0005485_14	1158604.I591_00410	212.0	0	N/A	N/A
PHROG	UHGV-0005485_15	phrog_88	146.0	1.69557e-43	major tail protein	tail
UniRef90	UHGV-0005485_15	UniRef90_A0A4V3RFT0	412.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0005485_15	1158604.I591_00409	410.0	0	Maj_tail_phi13 phage major tail , phi13 family protein	N/A
NCBIFam	UHGV-0005485_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0005485_15	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005485_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_16	phrog_525	80.0	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0005485_16	1158604.I591_00408	254.0	0	N/A	N/A
Pfam	UHGV-0005485_16	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0005485_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_17	phrog_5	42.2	0.000000000019	tail completion or Neck1 protein	connector
UniRef90	UHGV-0005485_17	UniRef90_UPI0018832E9E	200.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0005485_17	1158604.I591_00407	254.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0005485_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0005485_17	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_18	phrog_615	106.1	2.2e-31	head-tail adaptor	connector
UniRef90	UHGV-0005485_18	UniRef90_R3I753	125.0	8.65e-35	50S ribosomal protein L23	N/A
eggNOG-mapper	UHGV-0005485_18	1158604.I591_00406	244.0	0	N/A	N/A
structural_annotation	UHGV-0005485_18	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_19	phrog_132	48.4	0.00000000000013	head-tail adaptor	connector
eggNOG-mapper	UHGV-0005485_19	1158604.I591_00405	203.0	0	N/A	N/A
PHROG	UHGV-0005485_20	phrog_8832	135.0	1.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0005485_20	1158604.I591_00404	124.0	5.44e-37	N/A	N/A
PHROG	UHGV-0005485_21	phrog_1328	234.1	0	major head protein	head and packaging
UniRef90	UHGV-0005485_21	UniRef90_UPI00065DF913	500.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005485_21	1158604.I591_00403	564.0	0	N/A	N/A
Pfam	UHGV-0005485_21	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0005485_21	PF17236,MF_04119,NF033394,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_22	phrog_172	74.7	1.6e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0005485_22	UniRef90_A0A1Y3HWY1	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005485_22	1158604.I591_00402	365.0	0	N/A	N/A
Pfam	UHGV-0005485_22	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0005485_22	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_23	phrog_5859	114.9	2.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0005485_23	1158604.I591_00401	199.0	0	N/A	N/A
structural_annotation	UHGV-0005485_23	PF03927,MF_02200,NF009840,COG3471	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_24	phrog_2841	200.0	0	minor head protein	head and packaging
UniRef90	UHGV-0005485_24	UniRef90_A0A7U8FBT1	516.0	0	Minor head protein	N/A
eggNOG-mapper	UHGV-0005485_24	1158604.I591_00400	581.0	0	cell adhesion	N/A
NCBIFam	UHGV-0005485_24	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0005485_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005485_24	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_25	phrog_64	284.7	0	portal protein	head and packaging
UniRef90	UHGV-0005485_25	UniRef90_A0A511J5V4	998.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0005485_25	1158604.I591_00399	998.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0005485_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0005485_25	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0005485_26	K06909	68.4	1e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005485_26	phrog_5902	260.8	0	N/A	unknown function
UniRef90	UHGV-0005485_26	UniRef90_A0A511J545	925.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005485_26	1158604.I591_00398	925.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0005485_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0005485_26	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0005485_26	PF04466,PF20441,MF_04145,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_27	phrog_1889	296.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0005485_27	UniRef90_UPI001898918F	471.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0005485_27	1158604.I591_00397	373.0	0	Phage terminase small subunit	N/A
Pfam	UHGV-0005485_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-0005485_27	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0005485_27	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005485_27	PF10668,NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_28	phrog_19998	46.0	0.0000000000009	N/A	unknown function
eggNOG-mapper	UHGV-0005485_28	226185.EF_2020	110.0	2.07e-26	N/A	N/A
PHROG	UHGV-0005485_29	phrog_1202	138.0	1.40004e-41	N/A	unknown function
eggNOG-mapper	UHGV-0005485_29	565664.EFXG_01156	133.0	4.86e-40	N/A	N/A
structural_annotation	UHGV-0005485_29	PF18789	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005485_31	UniRef90_A0A7X7YZ46	73.2	2.67e-16	Zinc ribbon-containing protein	N/A
eggNOG-mapper	UHGV-0005485_31	1136163.M565_ctg1P1635	72.0	1.26e-16	Zinc-ribbon containing domain	N/A
Pfam	UHGV-0005485_31	PF07295	N/A	N/A	Zinc-ribbon containing domain	DUF1451
structural_annotation	UHGV-0005485_31	TIGR02605,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0005485_32	phrog_248	98.0	1.1e-28	transcriptional activator	transcription regulation
UniRef90	UHGV-0005485_32	UniRef90_A0A4S2C6C6	249.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0005485_32	1104325.M7W_1345	126.0	1.58e-35	N/A	N/A
NCBIFam	UHGV-0005485_32	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0005485_32	PF05263,MF_00674,TIGR01637,COG1191	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005485_34	768486.EHR_02695	146.0	4.2039e-45	N/A	N/A
PHROG	UHGV-0005485_35	phrog_1799	43.4	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0005485_35	768486.EHR_00730	261.0	0	N/A	N/A
PHROG	UHGV-0005485_36	phrog_13888	118.4	3.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0005485_36	768486.EHR_00735	142.0	1.24716e-43	N/A	N/A
structural_annotation	UHGV-0005485_36	PF11011	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005485_37	UniRef90_A0A4V3RFW4	65.5	0.000000000000818	Addiction module toxin RelE	N/A
eggNOG-mapper	UHGV-0005485_37	1158604.I591_01785	133.0	1.56e-40	N/A	N/A
PHROG	UHGV-0005485_38	phrog_26325	66.8	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0005485_38	565664.EFXG_01793	62.4	0.0000000000248	N/A	N/A
KOfam	UHGV-0005485_39	K02086	42.3	0.0000000000081	dnaD; DNA replication protein	N/A
PHROG	UHGV-0005485_39	phrog_16706	247.8	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005485_39	UniRef90_A0A8E2RRE1	572.0	0	DNA replication protein DnaD	N/A
eggNOG-mapper	UHGV-0005485_39	1158602.I590_02958	261.0	0	N/A	N/A
Pfam	UHGV-0005485_39	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-0005485_39	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0005485_39	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0005485_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0005485_39	PF14297	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005485_40	768486.EHR_00760	152.0	1.26117e-44	RecT family	N/A
COG	UHGV-0005485_40	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A