UHGV-0005588 (vOTU-137857)

Viral Genome: UHGV-0005588

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0005588
vOTU ID	vOTU-137857
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_12_2311__NODE_317_length_91490_cov_22.564077_1
Associated BioSample	SAMEA4766220
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.973
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.55
Jumbo phage	No

Genome content
Genome length (bp)	29,426
GC content	36.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	94%
Average CDS length (bps)	641.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0005588_1	phrog_6616	153.5	1.4013e-45	tail protein	tail
UniRef90	UHGV-0005588_1	UniRef90_UPI001D0763AB	264.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0005588_1	1499683.CCFF01000014_gene3896	180.0	3.92364e-44	Phage minor structural protein	N/A
COG	UHGV-0005588_1	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0005588_1	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_2	phrog_1194	77.1	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0005588_2	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0005588_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_3	phrog_1535	226.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0005588_3	UniRef90_A0A1I1XW41	418.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0005588_3	717606.PaecuDRAFT_3132	414.0	0	Phage-related minor tail protein	N/A
COG	UHGV-0005588_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0005588_3	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_4	phrog_8355	101.0	3.3e-30	N/A	unknown function
UniRef90	UHGV-0005588_4	UniRef90_UPI0006BBA9AA	142.0	1.65003e-41	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0005588_4	394503.Ccel_3036	117.0	3.5e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0005588_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0005588_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_5	phrog_8300	69.8	3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0005588_5	1151292.QEW_2425	70.1	0.0000000000000419	N/A	N/A
structural_annotation	UHGV-0005588_5	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_6	phrog_820	109.8	1.8e-32	major tail protein	tail
UniRef90	UHGV-0005588_6	UniRef90_T3DDR1	187.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0005588_6	1151292.QEW_2426	187.0	0	N/A	N/A
structural_annotation	UHGV-0005588_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_7	phrog_2595	91.6	6.8e-27	head-tail connector protein	connector
UniRef90	UHGV-0005588_7	UniRef90_UPI001D068DAC	143.0	1.35996e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0005588_7	742740.HMPREF9474_03510	129.0	1.35e-36	N/A	N/A
Pfam	UHGV-0005588_7	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0005588_7	PF12691,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005588_8	742740.HMPREF9474_03509	126.0	1.99e-35	N/A	N/A
PHROG	UHGV-0005588_9	phrog_8710	136.2	8.99998e-41	N/A	unknown function
eggNOG-mapper	UHGV-0005588_9	742740.HMPREF9474_03508	127.0	8.63e-37	N/A	N/A
structural_annotation	UHGV-0005588_9	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_10	phrog_541	68.1	1.3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0005588_10	33035.JPJF01000093_gene2250	145.0	2.18603e-43	N/A	N/A
PHROG	UHGV-0005588_11	phrog_1378	72.3	4.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0005588_11	1391647.AVSV01000003_gene1809	69.3	0.0000000000000359	N/A	N/A
PHROG	UHGV-0005588_12	phrog_422	357.8	0	major head protein	head and packaging
UniRef90	UHGV-0005588_12	UniRef90_A0A356C4N2	561.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0005588_12	742740.HMPREF9474_03505	474.0	0	N/A	N/A
PHROG	UHGV-0005588_13	phrog_2303	137.9	7.00005e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0005588_13	1298920.KI911353_gene4851	142.0	2.28e-39	N/A	N/A
PHROG	UHGV-0005588_14	phrog_355	64.4	1.7e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005588_14	UniRef90_A0A415G5B2	145.0	1.52742e-43	N/A	N/A
eggNOG-mapper	UHGV-0005588_14	1256908.HMPREF0373_00479	143.0	1.98984e-43	N/A	N/A
Pfam	UHGV-0005588_14	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0005588_14	PF14359	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005588_15	PF14524,NF041178	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_16	phrog_32514	49.5	0.000000000000058	N/A	unknown function
PHROG	UHGV-0005588_18	phrog_581	243.7	0	minor head protein	head and packaging
UniRef90	UHGV-0005588_18	UniRef90_A0A3D5LQU4	652.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0005588_18	33035.JPJF01000093_gene2255	449.0	0	N/A	N/A
Pfam	UHGV-0005588_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0005588_18	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0005588_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_19	phrog_533	277.1	0	portal protein	head and packaging
UniRef90	UHGV-0005588_19	UniRef90_A0A3D5LTG9	926.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0005588_19	33035.JPJF01000093_gene2257	559.0	0	N/A	N/A
structural_annotation	UHGV-0005588_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0005588_20	K06909	100.6	2e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005588_20	phrog_2	68.3	1.7e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0005588_20	UniRef90_A0A413YU24	891.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0005588_20	1415775.U729_2599	511.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0005588_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0005588_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0005588_20	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_21	phrog_2538	89.7	2.6e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0005588_21	UniRef90_A0A1C5UE81	144.0	2.92031e-42	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005588_21	1139219.I569_01387	63.2	0.0000000000424	Helix-turn-helix of insertion element transposase	N/A
Pfam	UHGV-0005588_21	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0005588_21	PF13022	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_22	phrog_36	47.4	0.00000000000034	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0005588_22	397290.C810_01391	139.0	1.73e-40	N/A	N/A
structural_annotation	UHGV-0005588_22	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005588_23	UniRef90_A0A417WAJ1	112.0	1.18e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0005588_23	1235800.C819_02254	98.6	1.32e-25	HNH nucleases	N/A
PHROG	UHGV-0005588_24	phrog_355	73.9	1.9e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005588_24	UniRef90_A0A1C5VVJ6	72.4	0.0000000000000819	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0005588_24	573061.Clocel_3558	66.6	0.00000000000285	N/A	N/A
Pfam	UHGV-0005588_24	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0005588_24	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0005588_24	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_25	phrog_15077	106.4	2.8e-33	N/A	unknown function
UniRef90	UHGV-0005588_25	UniRef90_A0A174WLY0	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005588_25	483218.BACPEC_01165	193.0	0	N/A	N/A
structural_annotation	UHGV-0005588_25	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_26	phrog_8470	288.0	0	N/A	unknown function
UniRef90	UHGV-0005588_26	UniRef90_UPI001D08730A	172.0	4.59065e-42	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0005588_26	483218.BACPEC_01166	373.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0005588_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0005588_26	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005588_27	483218.BACPEC_01167	191.0	0	N/A	N/A
KOfam	UHGV-0005588_28	K03469	77.1	3.4e-22	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0005588_28	phrog_531	75.4	8.2e-22	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005588_28	UniRef90_A0A350VVB3	123.0	2.61e-33	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005588_28	1519464.HY22_13875	84.3	1.15e-18	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0005588_28	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0005588_28	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0005588_28	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_29	phrog_3584	160.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0005588_29	1235800.C819_02258	274.0	0	N/A	N/A
structural_annotation	UHGV-0005588_29	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_32	phrog_20040	40.6	0.000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0005588_32	1538644.KO02_12130	103.0	2.47e-28	N/A	N/A
KOfam	UHGV-0005588_38	K18830	51.2	0.000000000000027	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0005588_38	phrog_8	45.5	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005588_38	UniRef90_A0A356C4L0	117.0	1.7e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0005588_38	1161413.HMPREF1510_1296	49.7	0.00000304	Transcriptional regulator	N/A
Pfam	UHGV-0005588_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005588_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0005588_39	K22300	53.3	0.0000000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0005588_39	phrog_8	52.9	0.0000000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005588_39	UniRef90_A0A3D5LQZ9	246.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0005588_39	1211819.CALK01000005_gene2436	67.8	0.00000000000423	Peptidase S24-like	N/A
Pfam	UHGV-0005588_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005588_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0005588_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0005588_40	K22300	58.5	1.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0005588_40	phrog_8	70.3	3.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005588_40	UniRef90_A0A413YU20	230.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0005588_40	553973.CLOHYLEM_07297	88.2	6.29e-21	Transcriptional	N/A
PADLOC	UHGV-0005588_40	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000048	N/A	Retron
Pfam	UHGV-0005588_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005588_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0005588_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0005588_41	phrog_20886	51.0	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0005588_41	476272.RUMHYD_02825	57.8	0.00000000136	N/A	N/A
structural_annotation	UHGV-0005588_41	PF06114	N/A	N/A	N/A	N/A
Pfam	UHGV-0005588_42	PF21646	N/A	N/A	Actin maturation protease-like, C-terminal domain	ACTMAP-like_C
structural_annotation	UHGV-0005588_42	PF21646,COG3271	N/A	N/A	N/A	N/A
KOfam	UHGV-0005588_43	K06400	364.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0005588_43	phrog_95	355.9	0	integrase	integration and excision
UniRef90	UHGV-0005588_43	UniRef90_A0A413YU13	839.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0005588_43	411462.DORLON_00823	464.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0005588_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0005588_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0005588_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0005588_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0005588_43	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A