UHGV-0005818 (vOTU-082531)

Viral Genome: UHGV-0005818

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0005818
vOTU ID	vOTU-082531
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_6_2620__NODE_690_length_69500_cov_22.096510_1
Associated BioSample	SAMEA4766366
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9735
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.98
Jumbo phage	No

Genome content
Genome length (bp)	42,534
GC content	47.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	92%
Average CDS length (bps)	785.94
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0005818_1	K06400	386.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0005818_1	phrog_95	377.5	0	integrase	integration and excision
UniRef90	UHGV-0005818_1	UniRef90_E8LBZ4	426.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0005818_1	626939.HMPREF9443_00357	426.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0005818_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0005818_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0005818_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0005818_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0005818_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_2	K07448	49.6	0.000000000000039	mrr; restriction system protein	N/A
UniRef90	UHGV-0005818_2	UniRef90_E7N368	297.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0005818_2	50960.LS81_07910	64.7	0.00000000195	Restriction endonuclease	N/A
Pfam	UHGV-0005818_2	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
structural_annotation	UHGV-0005818_2	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_3	K18830	54.5	0.0000000000000029	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0005818_3	phrog_8	55.8	0.0000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005818_3	UniRef90_UPI0015701830	77.4	5.12e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0005818_3	1033744.CAEL01000029_gene1309	72.4	0.0000000000000292	Peptidase S24-like	N/A
Pfam	UHGV-0005818_3	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0005818_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0005818_3	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_4	K22300	64.1	3.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0005818_4	phrog_4	57.5	3.6e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0005818_4	UniRef90_R6X1Y8	131.0	5.13e-37	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0005818_4	411470.RUMGNA_02181	83.2	9.4e-19	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0005818_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005818_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0005818_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005818_12	UniRef90_UPI001959B0CA	54.7	0.00000156	N/A	N/A
eggNOG-mapper	UHGV-0005818_12	693746.OBV_34730	55.8	0.0000000961	N/A	N/A
Pfam	UHGV-0005818_12	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0005818_12	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0005818_12	PF12957	N/A	N/A	N/A	N/A
Pfam	UHGV-0005818_13	PF01476	N/A	N/A	LysM domain	LysM
structural_annotation	UHGV-0005818_13	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_14	K03497	155.8	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0005818_14	phrog_6218	234.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005818_14	UniRef90_UPI0014131155	344.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0005818_14	718252.FP2_00920	217.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0005818_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0005818_14	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0005818_14	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0005818_14	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_18	phrog_3584	195.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0005818_18	642492.Clole_0725	165.0	0	N/A	N/A
structural_annotation	UHGV-0005818_18	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_20	K07474	90.8	3.3e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0005818_20	phrog_51	80.2	1e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0005818_20	UniRef90_A0A8B2QP55	92.8	2.26e-21	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0005818_20	1160721.RBI_II00483	76.3	0.00000000000000142	DNA packaging	N/A
Pfam	UHGV-0005818_20	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0005818_20	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0005818_20	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_21	K06909	51.4	0.000000000000015	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005818_21	phrog_5902	236.9	0	N/A	unknown function
UniRef90	UHGV-0005818_21	UniRef90_A0A1B1I1J7	567.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0005818_21	1200557.JHWV01000001_gene277	558.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0005818_21	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0005818_21	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_23	phrog_332	414.2	0	head-tail adaptor	connector
UniRef90	UHGV-0005818_23	UniRef90_A0A8B2QMC7	652.0	0	Head-to-tail connecting protein	N/A
eggNOG-mapper	UHGV-0005818_23	585503.HMPREF7545_1733	559.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0005818_23	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0005818_23	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_25	phrog_458	84.1	2.2e-24	protease	other
UniRef90	UHGV-0005818_25	UniRef90_A0A6N6L8Z8	72.0	0.00000000000636	Protease	N/A
eggNOG-mapper	UHGV-0005818_25	585503.HMPREF7545_1735	150.0	3.60134e-43	N/A	N/A
PHROG	UHGV-0005818_26	phrog_212	110.7	0	major head protein	head and packaging
UniRef90	UHGV-0005818_26	UniRef90_A0A0U1KVA9	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005818_26	585503.HMPREF7545_1736	385.0	0	N/A	N/A
Pfam	UHGV-0005818_26	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0005818_26	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_27	phrog_427	42.5	0.0000000000099	N/A	unknown function
eggNOG-mapper	UHGV-0005818_27	585503.HMPREF7545_1737	117.0	3.7e-32	N/A	N/A
structural_annotation	UHGV-0005818_27	PF21190,NF033675	N/A	N/A	N/A	N/A
Pfam	UHGV-0005818_28	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
PHROG	UHGV-0005818_29	phrog_394	175.2	0	tail protein	tail
UniRef90	UHGV-0005818_29	UniRef90_A0A8B2QU77	242.0	0	Tail tube protein	N/A
eggNOG-mapper	UHGV-0005818_29	585503.HMPREF7545_1739	184.0	0	N/A	N/A
structural_annotation	UHGV-0005818_29	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_30	phrog_376	716.5	0	tail protein	tail
UniRef90	UHGV-0005818_30	UniRef90_A0A0U1KV93	521.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005818_30	585503.HMPREF7545_1740	836.0	0	N/A	N/A
structural_annotation	UHGV-0005818_30	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_31	phrog_308	92.1	6.5e-27	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0005818_31	492774.JQMB01000013_gene3025	62.0	0.000000000655	N/A	N/A
structural_annotation	UHGV-0005818_31	PF11039,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_32	phrog_418	47.6	0.00000000000015	internal virion protein	head and packaging
structural_annotation	UHGV-0005818_32	TIGR02971	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005818_33	UniRef90_A0A1B3X2T2	172.0	1.21997e-41	NlpC/P60 domain-containing protein	N/A
structural_annotation	UHGV-0005818_33	NF008096	N/A	N/A	N/A	N/A
KOfam	UHGV-0005818_34	K20478	88.3	2.5e-27	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0005818_34	phrog_9880	303.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0005818_34	568816.Acin_1824	479.0	0	N/A	N/A
Pfam	UHGV-0005818_34	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
PHROG	UHGV-0005818_35	phrog_1640	85.1	8.1e-25	tail protein	tail
eggNOG-mapper	UHGV-0005818_35	1327941.T1S9Y2_9CAUD	74.7	0.00000000000266	outer membrane	N/A
PHROG	UHGV-0005818_36	phrog_18608	54.3	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0005818_36	1294142.CINTURNW_0307	60.1	0.0000000825	N/A	N/A
PHROG	UHGV-0005818_37	phrog_4209	47.4	0.00000000000024	tail fiber protein	tail
COG	UHGV-0005818_37	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0005818_38	phrog_2837	58.2	1.6e-16	tail protein	tail
UniRef90	UHGV-0005818_38	UniRef90_A0A1Q6R2G9	138.0	1.33e-38	N/A	N/A
eggNOG-mapper	UHGV-0005818_38	1120985.AUMI01000001_gene2155	56.2	0.000000349	N/A	N/A
Pfam	UHGV-0005818_38	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0005818_38	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_39	phrog_4105	76.4	3.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0005818_39	537013.CLOSTMETH_01753	78.6	1.28e-17	N/A	N/A
PHROG	UHGV-0005818_41	phrog_872	86.7	2.8e-25	N/A	unknown function
UniRef90	UHGV-0005818_41	UniRef90_UPI001D029300	118.0	5.97e-33	N/A	N/A
eggNOG-mapper	UHGV-0005818_41	1519439.JPJG01000060_gene1880	117.0	4.89e-31	N/A	N/A
Pfam	UHGV-0005818_41	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0005818_41	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0005818_41	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005818_42	1392502.JNIO01000008_gene1280	229.0	0	N/A	N/A
structural_annotation	UHGV-0005818_42	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0005818_43	phrog_9467	185.8	0	N/A	unknown function
UniRef90	UHGV-0005818_43	UniRef90_UPI0018C8333C	164.0	0	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0005818_43	573061.Clocel_3545	154.0	0	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
Pfam	UHGV-0005818_43	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0005818_43	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005818_43	PF13876	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005818_49	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005818_50	UniRef90_A0A7M1RS47	87.0	6.56e-19	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0005818_50	1378168.N510_03079	52.8	0.00000451	N/A	N/A