UHGV-0006844 (vOTU-074025)

Viral Genome: UHGV-0006844

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0006844
vOTU ID	vOTU-074025
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_9_2144__NODE_2243_length_40029_cov_15.503454_1
Associated BioSample	SAMEA4766167
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.45 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9552
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.6
Jumbo phage	No

Genome content
Genome length (bp)	29,143
GC content	28.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	90%
Average CDS length (bps)	595.02
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0006844_1	K14059	184.0	0	int; integrase	N/A
PHROG	UHGV-0006844_1	phrog_1	164.0	0	integrase	integration and excision
UniRef90	UHGV-0006844_1	UniRef90_R5LPI4	176.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_1	1504823.CCMM01000012_gene1969	171.0	0	DNA integration	N/A
Pfam	UHGV-0006844_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0006844_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0006844_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0006844_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0006844_1	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006844_3	UniRef90_A0A3B8SNC0	136.0	1.4e-39	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_3	697281.Mahau_2934	52.0	0.000000536	Zn peptidase	N/A
Pfam	UHGV-0006844_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0006844_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0006844_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_4	K22300	64.8	1.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0006844_4	phrog_8	69.5	6.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006844_4	UniRef90_A0A829ZFW6	78.2	4.68e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_4	546275.FUSPEROL_00457	78.2	1.07e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0006844_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0006844_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0006844_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006844_5	UniRef90_UPI001431E11D	77.4	4.03e-17	N/A	N/A
eggNOG-mapper	UHGV-0006844_5	646413.C5IUM3_9CAUD	70.9	0.00000000000000202	N/A	N/A
Pfam	UHGV-0006844_5	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0006844_5	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_8	phrog_270	138.1	7.00005e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006844_8	UniRef90_A0A0H4TJ49	167.0	0	DnaD	N/A
eggNOG-mapper	UHGV-0006844_8	226185.EF_2027	128.0	3.74e-33	Helix-turn-helix domain	N/A
Pfam	UHGV-0006844_8	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0006844_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0006844_8	PF13730,MF_01909,NF040939,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_9	phrog_2289	40.5	0.000000000042	helicase loader	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0006844_9	PF11417,PF08209	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_12	K04763	77.4	2.2e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0006844_12	phrog_216	114.0	8.8e-34	integrase	integration and excision
UniRef90	UHGV-0006844_12	UniRef90_R7ID34	309.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_12	1232446.BAIE02000002_gene805	269.0	0	Integrase	N/A
Pfam	UHGV-0006844_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0006844_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0006844_12	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_18	K03744	152.1	4.2039e-45	lemA; LemA protein	N/A
PHROG	UHGV-0006844_18	phrog_1383	132.7	1.8e-39	virion structural protein	head and packaging
UniRef90	UHGV-0006844_18	UniRef90_A0A1Q6M2C0	197.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0006844_18	1497679.EP56_05670	159.0	0	LemA family	N/A
Pfam	UHGV-0006844_18	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0006844_18	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0006844_18	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_19	phrog_3886	117.0	1.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0006844_19	742735.HMPREF9467_00880	107.0	6.03e-26	N/A	N/A
PHROG	UHGV-0006844_20	phrog_3886	58.0	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0006844_20	742740.HMPREF9474_02292	50.1	0.00000835	N/A	N/A
Pfam	UHGV-0006844_21	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0006844_21	PF04545,MF_00674,NF008895,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_22	K07451	41.4	0.000000000026	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0006844_22	phrog_119	67.1	2.5e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006844_22	UniRef90_UPI000F06AC0F	112.0	1.73e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0006844_22	927704.SELR_11230	94.4	7.05e-24	HNH endonuclease	N/A
COG	UHGV-0006844_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0006844_24	phrog_1066	74.4	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0006844_24	1341151.ASZU01000004_gene265	53.1	0.000000491	N/A	N/A
PHROG	UHGV-0006844_25	phrog_9	404.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0006844_25	UniRef90_A0A1Y3PHV0	649.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0006844_25	1089548.KI783301_gene3220	618.0	0	Terminase	N/A
Pfam	UHGV-0006844_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0006844_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0006844_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0006844_25	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_26	phrog_12	121.7	4.7e-36	portal protein	head and packaging
UniRef90	UHGV-0006844_26	UniRef90_A0A7X7AAU2	350.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0006844_26	397290.C810_00419	302.0	0	Phage portal protein	N/A
Pfam	UHGV-0006844_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0006844_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0006844_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_28	K06904	126.4	3e-37	N/A	N/A
PHROG	UHGV-0006844_28	phrog_80	157.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0006844_28	UniRef90_A0A1V5IPN6	216.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0006844_28	1203606.HMPREF1526_01338	179.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0006844_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0006844_28	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0006844_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0006844_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_29	phrog_10	192.8	0	major head protein	head and packaging
UniRef90	UHGV-0006844_29	UniRef90_A0A1T4M146	355.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0006844_29	1297617.JPJD01000020_gene308	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0006844_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0006844_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0006844_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0006844_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_30	phrog_5223	100.9	5.2e-30	neck protein	connector
UniRef90	UHGV-0006844_30	UniRef90_UPI0003FE9443	95.1	1.23e-23	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0006844_30	1280689.AUJC01000011_gene1523	95.1	2.06e-24	N/A	N/A
Pfam	UHGV-0006844_30	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0006844_30	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0006844_30	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_31	phrog_1951	71.0	1.3e-20	head-tail adaptor	connector
UniRef90	UHGV-0006844_31	UniRef90_UPI0017807C43	54.3	0.000000226	phage head closure protein	N/A
eggNOG-mapper	UHGV-0006844_31	1160721.RBI_I01580	78.2	1.85e-17	head-tail adaptor	N/A
COG	UHGV-0006844_31	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0006844_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-0006844_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0006844_32	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006844_33	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_34	phrog_885	108.1	7e-32	major tail protein	tail
UniRef90	UHGV-0006844_34	UniRef90_A0A7C6X6S5	125.0	6.13e-32	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_34	1160721.RBI_I01578	157.0	0	N/A	N/A
structural_annotation	UHGV-0006844_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_36	phrog_8462	107.9	1.3e-31	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0006844_36	1160721.RBI_I01576	154.0	3.3e-37	tail tape measure protein, TP901	N/A
COG	UHGV-0006844_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0006844_36	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_37	phrog_33	73.7	4.4e-21	distal tail protein Dit	tail
UniRef90	UHGV-0006844_37	UniRef90_A0A350TW29	121.0	1.67e-30	Phage tail protein	N/A
eggNOG-mapper	UHGV-0006844_37	1540257.JQMW01000009_gene3383	68.9	0.000000000103	N/A	N/A
COG	UHGV-0006844_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0006844_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_38	phrog_5555	362.5	0	tail protein	tail
eggNOG-mapper	UHGV-0006844_38	1408823.AXUS01000025_gene2634	255.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0006844_38	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0006844_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0006844_38	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
Pfam	UHGV-0006844_38	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0006844_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0006844_38	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0006844_39	phrog_13632	44.3	0.0000000000038	N/A	unknown function
PHROG	UHGV-0006844_41	phrog_918	113.1	9e-34	N/A	unknown function
UniRef90	UHGV-0006844_41	UniRef90_UPI000DEAEBAB	125.0	1.32e-35	N/A	N/A
eggNOG-mapper	UHGV-0006844_41	469618.FVAG_01307	117.0	3.2e-33	N/A	N/A
Pfam	UHGV-0006844_41	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0006844_41	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0006844_42	K01447	64.6	2.1e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0006844_42	phrog_7698	154.0	0	endolysin	lysis
UniRef90	UHGV-0006844_42	UniRef90_A0A353JBB4	277.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0006844_42	1123263.AUKY01000023_gene1215	139.0	1.32e-36	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0006844_42	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0006844_42	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0006844_42	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0006844_42	MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0006844_44	phrog_24764	74.9	9.6e-22	N/A	unknown function
UniRef90	UHGV-0006844_44	UniRef90_A0A847NVF4	132.0	1.13e-37	TnpV protein	N/A
eggNOG-mapper	UHGV-0006844_44	742738.HMPREF9460_01242	74.3	0.00000000000000141	Transposon-encoded protein TnpV	N/A
Pfam	UHGV-0006844_44	PF14198	N/A	N/A	Transposon-encoded protein TnpV	TnpV
structural_annotation	UHGV-0006844_44	PF14198	N/A	N/A	N/A	N/A