UHGV-0006858 (vOTU-012580)

Viral Genome: UHGV-0006858

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0006858
vOTU ID	vOTU-012580
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_18_2239__NODE_599_length_91555_cov_55.343536_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.63
Jumbo phage	No

Genome content
Genome length (bp)	41,437
GC content	46.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	95%
Average CDS length (bps)	754.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0006858_1	K06400	381.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0006858_1	phrog_95	367.3	0	integrase	integration and excision
UniRef90	UHGV-0006858_1	UniRef90_E8LBZ4	423.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0006858_1	626939.HMPREF9443_00357	423.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0006858_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0006858_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0006858_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0006858_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0006858_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_2	K07448	51.3	0.000000000000012	mrr; restriction system protein	N/A
UniRef90	UHGV-0006858_2	UniRef90_A0A644WFW5	297.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0006858_2	50960.LS81_07910	71.2	0.00000000000905	Restriction endonuclease	N/A
Pfam	UHGV-0006858_2	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
structural_annotation	UHGV-0006858_2	PF04471,MF_00722,NF003270,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_3	K18830	59.1	1e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0006858_3	phrog_8	58.2	2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006858_3	UniRef90_B0N8N2	69.3	0.000000000000504	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0006858_3	445974.CLORAM_02966	69.3	0.0000000000000845	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0006858_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0006858_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0006858_3	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_4	K22300	61.8	1.7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0006858_4	phrog_4	56.9	5.4e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0006858_4	UniRef90_R6X1Y8	129.0	4.03e-36	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0006858_4	411470.RUMGNA_02181	82.4	1.82e-18	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0006858_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0006858_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0006858_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006858_7	PF13033	N/A	N/A	N/A	N/A
Pfam	UHGV-0006858_12	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0006858_12	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_15	K03497	160.1	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0006858_15	phrog_6218	243.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006858_15	UniRef90_A0A1Y4WCX6	314.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0006858_15	1408437.JNJN01000030_gene1074	224.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0006858_15	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0006858_15	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0006858_15	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0006858_15	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_17	phrog_1672	48.9	0.000000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0006858_17	1443122.Z958_05925	51.6	0.00000635	N/A	N/A
PHROG	UHGV-0006858_19	phrog_3584	205.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0006858_19	642492.Clole_0725	165.0	0	N/A	N/A
structural_annotation	UHGV-0006858_19	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_21	K07474	88.6	1.6e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0006858_21	phrog_51	80.2	1.5e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0006858_21	UniRef90_A0A8B2QP55	95.9	1.28e-22	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0006858_21	1160721.RBI_II00483	69.7	0.000000000000436	DNA packaging	N/A
Pfam	UHGV-0006858_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0006858_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0006858_21	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0006858_22	K06909	57.7	1.9e-16	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0006858_22	phrog_5902	249.5	0	N/A	unknown function
UniRef90	UHGV-0006858_22	UniRef90_UPI001D015CB7	566.0	0	terminase	N/A
eggNOG-mapper	UHGV-0006858_22	1200557.JHWV01000001_gene277	570.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0006858_22	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0006858_22	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_24	phrog_332	168.6	0	head-tail adaptor	connector
UniRef90	UHGV-0006858_24	UniRef90_A0A377Z7Q1	145.0	4.79e-37	Bacteriophage head to tail connecting protein	N/A
eggNOG-mapper	UHGV-0006858_24	585503.HMPREF7545_1733	301.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0006858_24	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
PHROG	UHGV-0006858_25	phrog_332	185.0	0	head-tail adaptor	connector
UniRef90	UHGV-0006858_25	UniRef90_UPI001E3C3D59	131.0	3.7e-34	portal protein	N/A
eggNOG-mapper	UHGV-0006858_25	585503.HMPREF7545_1733	201.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0006858_25	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
PHROG	UHGV-0006858_27	phrog_458	90.2	2.7e-26	protease	other
UniRef90	UHGV-0006858_27	UniRef90_A0A6J5NV41	79.3	0.0000000000000144	Putative protease	N/A
eggNOG-mapper	UHGV-0006858_27	585503.HMPREF7545_1735	145.0	4.38004e-41	N/A	N/A
PHROG	UHGV-0006858_28	phrog_212	103.3	0	major head protein	head and packaging
UniRef90	UHGV-0006858_28	UniRef90_A0A0U1KVA9	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006858_28	585503.HMPREF7545_1736	387.0	0	N/A	N/A
Pfam	UHGV-0006858_28	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0006858_28	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_29	phrog_427	42.7	0.0000000000089	N/A	unknown function
eggNOG-mapper	UHGV-0006858_29	585503.HMPREF7545_1737	112.0	4.9e-30	N/A	N/A
structural_annotation	UHGV-0006858_29	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_30	phrog_3281	42.2	0.000000000011	endonuclease VII	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0006858_30	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0006858_30	PF12949	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_31	phrog_394	171.8	0	tail protein	tail
UniRef90	UHGV-0006858_31	UniRef90_A0A8B2QU77	229.0	0	Tail tube protein	N/A
eggNOG-mapper	UHGV-0006858_31	585503.HMPREF7545_1739	176.0	0	N/A	N/A
structural_annotation	UHGV-0006858_31	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_32	phrog_376	511.3	0	tail protein	tail
UniRef90	UHGV-0006858_32	UniRef90_A0A0U1KV93	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006858_32	585503.HMPREF7545_1740	640.0	0	N/A	N/A
structural_annotation	UHGV-0006858_32	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_33	phrog_308	83.5	2.6e-24	internal virion protein	head and packaging
UniRef90	UHGV-0006858_33	UniRef90_A0A3A5L1J5	75.5	0.0000000000000286	N/A	N/A
eggNOG-mapper	UHGV-0006858_33	585503.HMPREF7545_1741	114.0	5.01e-30	N/A	N/A
structural_annotation	UHGV-0006858_33	PF11039,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_34	phrog_418	52.9	0.0000000000000058	internal virion protein	head and packaging
structural_annotation	UHGV-0006858_34	TIGR02971	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006858_35	UniRef90_A0A1B3X2T2	177.0	2.28412e-43	NlpC/P60 domain-containing protein	N/A
structural_annotation	UHGV-0006858_35	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_36	phrog_9880	386.8	0	N/A	unknown function
UniRef90	UHGV-0006858_36	UniRef90_A0A5D6WDM4	641.0	0	LPD23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006858_36	568816.Acin_1824	498.0	0	N/A	N/A
Pfam	UHGV-0006858_36	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0006858_36	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
PHROG	UHGV-0006858_37	phrog_1640	73.5	4.6e-22	tail protein	tail
eggNOG-mapper	UHGV-0006858_37	343516.Q286Z3_9CAUD	65.9	0.0000000279	outer membrane	N/A
structural_annotation	UHGV-0006858_37	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006858_38	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_39	phrog_1141	59.6	5.2e-17	tail fiber protein	tail
UniRef90	UHGV-0006858_39	UniRef90_A0A1Q6R2G9	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006858_39	1286631.X805_38770	52.4	0.00000627	N/A	N/A
Pfam	UHGV-0006858_39	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0006858_39	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_40	phrog_4105	83.8	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0006858_40	33035.JPJF01000043_gene996	77.0	1.23e-16	N/A	N/A
PHROG	UHGV-0006858_42	phrog_918	101.7	3.4e-30	N/A	unknown function
UniRef90	UHGV-0006858_42	UniRef90_UPI000EC62F11	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006858_42	537007.BLAHAN_05515	142.0	3.82554e-43	N/A	N/A
Pfam	UHGV-0006858_42	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0006858_42	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0006858_43	1392502.JNIO01000008_gene1280	226.0	0	N/A	N/A
structural_annotation	UHGV-0006858_43	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0006858_44	phrog_9467	58.8	7.7e-17	N/A	unknown function
UniRef90	UHGV-0006858_44	UniRef90_UPI00035C8C59	60.5	0.00000000103	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0006858_44	1415774.U728_724	67.0	0.000000000000663	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
dbAPIS	UHGV-0006858_44	APIS052	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006858_47	UniRef90_A0A316S6W0	91.3	1.62e-22	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0006858_47	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0006858_47	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0006858_47	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006858_52	PF18573,NF033147	N/A	N/A	N/A	N/A