UHGV-0006920 (vOTU-031963)

Viral Genome: UHGV-0006920

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0006920
vOTU ID	vOTU-031963
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_23_2677__NODE_1237_length_44750_cov_43.454391_1
Associated BioSample	SAMEA4766412
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9661
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.99
Jumbo phage	No

Genome content
Genome length (bp)	33,683
GC content	28.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	563.89
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0006920_2	phrog_6616	61.2	9.9e-18	tail protein	tail
UniRef90	UHGV-0006920_2	UniRef90_R6H354	105.0	6.82e-20	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0006920_2	658659.HMPREF0983_03295	88.6	0.00000000000000568	N/A	N/A
Pfam	UHGV-0006920_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0006920_3	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_4	K20361	44.6	0.00000000000091	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-0006920_4	phrog_1535	130.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0006920_4	UniRef90_A0A810PX76	91.7	0.000000000000002	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0006920_4	1235790.C805_00087	134.0	1.54e-29	tape measure	N/A
COG	UHGV-0006920_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0006920_5	phrog_706	134.0	9.90001e-40	N/A	unknown function
UniRef90	UHGV-0006920_5	UniRef90_A0A1V6D632	148.0	1.19993e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0006920_5	645991.Sgly_0348	167.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0006920_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0006920_5	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006920_6	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_7	phrog_3099	106.4	2.7e-31	N/A	unknown function
UniRef90	UHGV-0006920_7	UniRef90_A0A7M3SAI1	74.7	0.000000000000346	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0006920_7	1449050.JNLE01000003_gene3884	69.3	0.0000000000013	N/A	N/A
structural_annotation	UHGV-0006920_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_8	phrog_3266	108.5	4.2e-32	tail completion	connector
UniRef90	UHGV-0006920_8	UniRef90_A0A353JB81	242.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0006920_8	1280692.AUJL01000004_gene841	107.0	7.49e-28	N/A	N/A
structural_annotation	UHGV-0006920_8	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_9	phrog_556	49.4	0.000000000000072	minor head protein	head and packaging
eggNOG-mapper	UHGV-0006920_9	397290.C810_05200	75.9	0.00000000000000315	N/A	N/A
Pfam	UHGV-0006920_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0006920_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_10	phrog_3366	74.7	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0006920_10	411470.RUMGNA_02221	51.6	0.000000809	N/A	N/A
Pfam	UHGV-0006920_10	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0006920_10	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_11	phrog_541	54.8	0.0000000000000016	head-tail adaptor	connector
PHROG	UHGV-0006920_12	phrog_283	227.9	0	major head protein	head and packaging
UniRef90	UHGV-0006920_12	UniRef90_A0A173REC9	460.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0006920_12	411461.DORFOR_01167	430.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0006920_12	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0006920_12	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_13	phrog_194	43.3	0.0000000000068	head scaffolding protein	head and packaging
UniRef90	UHGV-0006920_13	UniRef90_A0A843HUH9	82.8	8.52e-17	Phage scaffolding protein (Fragment)	N/A
Pfam	UHGV-0006920_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0006920_14	phrog_581	150.4	1.26117e-44	minor head protein	head and packaging
UniRef90	UHGV-0006920_14	UniRef90_A0A136WBX5	231.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0006920_14	693746.OBV_18050	192.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0006920_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0006920_14	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0006920_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006920_14	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_15	phrog_533	163.0	0	portal protein	head and packaging
UniRef90	UHGV-0006920_15	UniRef90_A0A136WBU7	331.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0006920_15	663278.Ethha_0090	114.0	6.06e-25	N/A	N/A
structural_annotation	UHGV-0006920_15	PF05133,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_16	K06909	323.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0006920_16	phrog_5653	143.4	1.3999e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0006920_16	UniRef90_A0A353JAA1	647.0	0	PBSX family phage terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0006920_16	411461.DORFOR_01162	394.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0006920_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0006920_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0006920_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0006920_16	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006920_18	PF16535,PF04545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006920_19	PF10654	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006920_28	UniRef90_A0A8B6MGU2	46.6	0.00000545	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006920_28	1500386.A0A060AFF3_9CAUD	51.2	0.000000187	HNH endonuclease	N/A
Pfam	UHGV-0006920_28	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
PHROG	UHGV-0006920_38	phrog_72	64.2	2.3e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0006920_38	411490.ANACAC_00804	78.6	5.38e-16	N/A	N/A
structural_annotation	UHGV-0006920_38	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_39	K03111	112.0	8.6e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0006920_39	phrog_44	124.0	1.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006920_39	UniRef90_A0A350H2L8	112.0	8.95e-29	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0006920_39	1408417.JHYB01000002_gene700	99.0	1.3e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0006920_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0006920_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0006920_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0006920_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0006920_39	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_40	phrog_434	94.6	1.1e-27	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006920_40	UniRef90_A0A350H2L7	330.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0006920_40	1122146.AUHP01000010_gene1042	223.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0006920_40	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0006920_40	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0006920_40	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_41	phrog_155	113.1	2.6e-33	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006920_41	UniRef90_A0A3D1PJF8	224.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0006920_41	357809.Cphy_2988	204.0	0	ERF superfamily	N/A
Pfam	UHGV-0006920_41	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0006920_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0006920_41	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_42	K03111	79.3	7.7e-23	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0006920_42	phrog_44	82.9	5.9e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006920_42	UniRef90_A0A7C6IJ08	122.0	7.07e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0006920_42	1403313.AXBR01000026_gene5185	89.0	1.8e-21	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0006920_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0006920_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0006920_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0006920_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_44	phrog_2289	50.6	0.000000000000022	helicase loader	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0006920_44	PF11417,PF08209	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_45	K02086	64.8	1.5e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0006920_45	phrog_186	73.3	4e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0006920_45	1117379.BABA_09106	55.8	0.00000158	DNA replication protein DnaD	N/A
Pfam	UHGV-0006920_45	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0006920_45	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0006920_45	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0006920_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0006920_45	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_49	K22300	55.4	0.0000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0006920_49	phrog_2967	62.9	6.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006920_49	UniRef90_A0A496PAE8	73.9	0.00000000000000332	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0006920_49	546275.FUSPEROL_00457	74.7	5.51e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0006920_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0006920_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0006920_49	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_50	phrog_7168	57.8	2e-16	homing endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0006920_50	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
COG	UHGV-0006920_50	COG3860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006920_51	UniRef90_UPI00040193D9	95.5	1.94e-24	N/A	N/A
eggNOG-mapper	UHGV-0006920_51	1121947.AUHK01000002_gene903	94.4	9.32e-25	N/A	N/A
Pfam	UHGV-0006920_51	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0006920_51	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0006920_51	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_52	phrog_2967	58.3	1.7e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0006920_52	1121947.AUHK01000002_gene902	115.0	4.19e-28	Peptidase S24-like	N/A
Pfam	UHGV-0006920_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0006920_52	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0006920_52	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_53	phrog_15286	169.1	0	N/A	unknown function
UniRef90	UHGV-0006920_53	UniRef90_R5PQ40	166.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0006920_53	860228.Ccan_23730	157.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0006920_53	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0006920_53	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0006920_54	phrog_5978	196.3	0	N/A	unknown function
UniRef90	UHGV-0006920_54	UniRef90_A0A7X9GD35	434.0	0	Fic family protein	N/A
eggNOG-mapper	UHGV-0006920_54	877424.ATWC01000007_gene215	408.0	0	Fic family	N/A
Pfam	UHGV-0006920_54	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0006920_54	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0006920_54	PF02661,PF07106,TIGR02613,NF000244,COG3177	N/A	N/A	N/A	N/A
PHROG	UHGV-0006920_55	phrog_2657	160.3	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006920_55	UniRef90_A0A356K1I1	488.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0006920_55	428125.CLOLEP_01836	283.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-0006920_55	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-0006920_55	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0006920_56	K06400	352.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0006920_56	phrog_95	336.0	0	integrase	integration and excision
UniRef90	UHGV-0006920_56	UniRef90_UPI001BAD55EF	426.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0006920_56	1120998.AUFC01000013_gene2937	348.0	0	N/A	N/A
Pfam	UHGV-0006920_56	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0006920_56	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0006920_56	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0006920_56	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0006920_56	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A