UHGV-0007225 (vOTU-025517)

Viral Genome: UHGV-0007225

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0007225
vOTU ID	vOTU-025517
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_82_length_307987_cov_14.584418_1
Associated BioSample	SAMEA4765669
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.86 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9723
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.18
Jumbo phage	No

Genome content
Genome length (bp)	37,560
GC content	58.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	698.40
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0007225_1	phrog_13256	58.4	8.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0007225_1	1226322.HMPREF1545_00132	52.4	0.0000000374	N/A	N/A
PHROG	UHGV-0007225_2	phrog_1863	65.3	5.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0007225_2	693746.OBV_18260	107.0	3.06e-29	N/A	N/A
KOfam	UHGV-0007225_3	K07273	130.0	2.5e-38	acm; lysozyme	N/A
PHROG	UHGV-0007225_3	phrog_291	100.7	1.5e-29	endolysin	lysis
UniRef90	UHGV-0007225_3	UniRef90_A0A1Q6T343	621.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_3	411471.SUBVAR_05145	258.0	0	heme binding	N/A
Pfam	UHGV-0007225_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0007225_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0007225_3	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0007225_3	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_7	phrog_19111	40.4	0.000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0007225_7	1298920.KI911353_gene541	54.7	0.00000833	ATPase involved in DNA repair	N/A
COG	UHGV-0007225_7	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0007225_8	phrog_18725	43.9	0.0000000000041	N/A	unknown function
eggNOG-mapper	UHGV-0007225_8	1120746.CCNL01000014_gene2212	104.0	4.02e-27	N/A	N/A
PHROG	UHGV-0007225_9	phrog_13879	277.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0007225_9	1120746.CCNL01000014_gene2107	309.0	0	N/A	N/A
structural_annotation	UHGV-0007225_9	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_10	phrog_1194	63.0	4.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0007225_10	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-0007225_10	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_11	phrog_1535	192.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0007225_11	665956.HMPREF1032_03628	164.0	1.33e-38	domain protein	N/A
COG	UHGV-0007225_11	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_12	phrog_706	101.5	7.9e-30	N/A	unknown function
UniRef90	UHGV-0007225_12	UniRef90_UPI0013141117	225.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0007225_12	665956.HMPREF1032_03058	215.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0007225_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0007225_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_13	phrog_11299	96.8	1.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0007225_13	665956.HMPREF1032_03059	117.0	1.49e-31	N/A	N/A
PHROG	UHGV-0007225_14	phrog_3099	147.2	7.56701e-44	N/A	unknown function
eggNOG-mapper	UHGV-0007225_14	411471.SUBVAR_06936	272.0	0	N/A	N/A
structural_annotation	UHGV-0007225_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_15	phrog_3266	65.6	7e-19	tail completion	connector
structural_annotation	UHGV-0007225_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_16	phrog_556	91.4	7.6e-27	minor head protein	head and packaging
UniRef90	UHGV-0007225_16	UniRef90_UPI001958E7C1	228.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0007225_16	665956.HMPREF1032_03062	170.0	0	Minor capsid protein	N/A
Pfam	UHGV-0007225_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0007225_16	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0007225_17	411471.SUBVAR_06991	50.1	0.00000234	N/A	N/A
Pfam	UHGV-0007225_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0007225_17	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_18	phrog_541	70.9	1.7e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0007225_18	665956.HMPREF1032_03064	88.2	1.07e-20	N/A	N/A
PHROG	UHGV-0007225_19	phrog_10	180.5	0	major head protein	head and packaging
UniRef90	UHGV-0007225_19	UniRef90_A0A367GHJ2	644.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0007225_19	663278.Ethha_0496	503.0	0	Phage capsid family	N/A
Pfam	UHGV-0007225_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0007225_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0007225_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0007225_19	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_20	phrog_194	80.7	1.7e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0007225_20	UniRef90_E6U604	182.0	0	Minor structural GP20 protein	N/A
eggNOG-mapper	UHGV-0007225_20	663278.Ethha_0093	182.0	0	N/A	N/A
Pfam	UHGV-0007225_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0007225_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_23	phrog_581	321.4	0	minor head protein	head and packaging
UniRef90	UHGV-0007225_23	UniRef90_A0A1C5NZK4	523.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0007225_23	718252.FP2_06690	436.0	0	N/A	N/A
Pfam	UHGV-0007225_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0007225_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007225_23	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_24	phrog_533	337.5	0	portal protein	head and packaging
UniRef90	UHGV-0007225_24	UniRef90_A0A367GFE3	729.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0007225_24	663278.Ethha_0090	567.0	0	N/A	N/A
structural_annotation	UHGV-0007225_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_25	K06909	122.6	4.2e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0007225_25	phrog_2	157.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0007225_25	UniRef90_A0A367GH60	746.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0007225_25	1120746.CCNL01000014_gene2093	527.0	0	DNA packaging	N/A
Pfam	UHGV-0007225_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0007225_25	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0007225_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0007225_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0007225_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_26	phrog_2412	90.3	1.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0007225_26	742738.HMPREF9460_02504	120.0	2.89e-33	N/A	N/A
eggNOG-mapper	UHGV-0007225_27	1280676.AUJO01000009_gene1947	85.5	4.7e-19	N/A	N/A
structural_annotation	UHGV-0007225_27	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_28	K23779	52.9	0.0000000000000089	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0007225_28	phrog_1373	46.3	0.00000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-0007225_28	UniRef90_A0A1Q6KNM8	95.1	8.24e-23	HTH cro/C1-type domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0007225_28	748224.HMPREF9436_03379	93.2	2.03e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0007225_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0007225_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0007225_28	PF13744,MF_00535,TIGR03070,COG5606	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_29	phrog_36	74.4	1.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0007225_29	UniRef90_A0A3E2U224	106.0	5.9e-27	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_29	411471.SUBVAR_05843	144.0	2.06972e-42	N/A	N/A
structural_annotation	UHGV-0007225_29	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_32	phrog_824	132.6	1.5e-39	N/A	unknown function
UniRef90	UHGV-0007225_32	UniRef90_R7GUQ9	149.0	3.78351e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_32	742738.HMPREF9460_02501	143.0	1.32002e-42	VRR_NUC	N/A
Pfam	UHGV-0007225_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0007225_32	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_33	K17677	390.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0007225_33	phrog_16	238.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007225_33	UniRef90_UPI001C63D655	697.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0007225_33	742738.HMPREF9460_02499	659.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0007225_33	mREase_IV_00005	110.8	9.2e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0007225_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0007225_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0007225_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0007225_33	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_34	phrog_8841	435.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007225_34	UniRef90_UPI000C77A760	585.0	0	N/A	N/A
eggNOG-mapper	UHGV-0007225_34	742738.HMPREF9460_02495	529.0	0	N/A	N/A
Pfam	UHGV-0007225_34	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0007225_34	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0007225_34	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007225_34	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_35	K02316	83.5	2.6e-24	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0007225_35	phrog_11992	107.6	1.3e-31	N/A	unknown function
UniRef90	UHGV-0007225_35	UniRef90_UPI001898AABD	105.0	5.94e-25	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_35	697329.Rumal_2505	100.0	1.69e-23	CHC2 zinc finger domain protein	N/A
PADLOC	UHGV-0007225_35	drt-cluster192	57.9	2.5e-16	DRT	DRT
Pfam	UHGV-0007225_35	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0007225_35	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
PHROG	UHGV-0007225_36	phrog_18107	65.2	1.2e-18	N/A	unknown function
UniRef90	UHGV-0007225_36	UniRef90_UPI00058F46CC	117.0	6.64e-30	N/A	N/A
eggNOG-mapper	UHGV-0007225_36	903814.ELI_1274	171.0	0	N/A	N/A
structural_annotation	UHGV-0007225_36	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_37	phrog_2872	234.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007225_37	UniRef90_A0A8J6JIF1	274.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0007225_37	754027.HMPREF9554_00709	224.0	0	N/A	N/A
Pfam	UHGV-0007225_37	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0007225_37	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007225_43	UniRef90_A0A367GIH6	114.0	3.24e-31	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0007225_43	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0007225_43	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007225_44	UniRef90_A0A372V3V8	92.4	2.08e-23	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0007225_44	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_45	phrog_8	60.5	3.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0007225_45	UniRef90_A0A372V3Y4	105.0	5.21e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0007225_45	411483.FAEPRAA2165_00756	97.4	1.11e-23	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0007225_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0007225_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0007225_45	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007225_46	UniRef90_A0A329UQ57	209.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_46	1507.HMPREF0262_00423	87.0	6.3e-20	IrrE N-terminal-like domain	N/A
COG	UHGV-0007225_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0007225_46	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_47	K07448	118.6	2e-35	mrr; restriction system protein	N/A
PHROG	UHGV-0007225_47	phrog_19856	44.2	0.0000000000016	N/A	unknown function
UniRef90	UHGV-0007225_47	UniRef90_R9KQA1	112.0	1.61e-23	Ftsk_gamma domain-containing protein	N/A
eggNOG-mapper	UHGV-0007225_47	411459.RUMOBE_01428	125.0	1.13e-31	Restriction endonuclease	N/A
PADLOC	UHGV-0007225_47	ZorD1_00005	59.5	5e-17	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0007225_47	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0007225_47	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0007225_48	K14059	136.8	2.6e-40	int; integrase	N/A
PHROG	UHGV-0007225_48	phrog_1	143.1	2.49992e-42	integrase	integration and excision
UniRef90	UHGV-0007225_48	UniRef90_UPI001D0E1DE1	345.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0007225_48	748224.HMPREF9436_03382	254.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0007225_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0007225_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0007225_48	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0007225_49	phrog_18347	65.1	1.2e-18	N/A	unknown function
UniRef90	UHGV-0007225_49	UniRef90_A0A1Q6T359	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0007225_49	742723.HMPREF9477_00941	89.7	8.5e-18	dextransucrase activity	N/A
Pfam	UHGV-0007225_49	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0007225_49	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0007225_49	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0007225_50	K04930	116.0	2.7e-34	KCNQ5, KV7.5; potassium voltage-gated channel KQT-like subfamily member 5	N/A
PHROG	UHGV-0007225_50	phrog_7872	125.0	5.4e-37	N/A	unknown function
UniRef90	UHGV-0007225_50	UniRef90_A0A373W4F6	248.0	0	Ion transporter	N/A
eggNOG-mapper	UHGV-0007225_50	665956.HMPREF1032_00150	239.0	0	Ion transport protein	N/A
Pfam	UHGV-0007225_50	PF00520	N/A	N/A	Ion transport protein	Ion_trans
COG	UHGV-0007225_50	COG0664	N/A	N/A	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	N/A
structural_annotation	UHGV-0007225_50	PF00520,NF040645	N/A	N/A	N/A	N/A