UHGV-0007439 (vOTU-040633)

Viral Genome: UHGV-0007439

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0007439
vOTU ID	vOTU-040633
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_I_17_2476__NODE_122_length_226600_cov_18.033431_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.6
Jumbo phage	No

Genome content
Genome length (bp)	31,988
GC content	42.16%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	96%
Average CDS length (bps)	578.15
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0007439_3	phrog_1863	61.0	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0007439_3	665956.HMPREF1032_03922	100.0	6.53e-27	N/A	N/A
PHROG	UHGV-0007439_7	phrog_538	96.6	4.7e-38	minor tail protein	tail
eggNOG-mapper	UHGV-0007439_7	1280671.AUJH01000012_gene3138	137.0	3.49e-31	N/A	N/A
Pfam	UHGV-0007439_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0007439_7	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_8	phrog_33	54.7	0.0000000000000023	distal tail protein Dit	tail
UniRef90	UHGV-0007439_8	UniRef90_A0A415MTE8	107.0	7.48e-24	Phage tail protein	N/A
eggNOG-mapper	UHGV-0007439_8	1256908.HMPREF0373_00467	187.0	0	N/A	N/A
structural_annotation	UHGV-0007439_8	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_9	phrog_6900	279.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0007439_9	UniRef90_A0A4D6AFE4	259.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0007439_9	1123309.AQYB01000018_gene819	363.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0007439_9	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0007439_9	MF_04138	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007439_10	UniRef90_A0A0D0RHE1	72.8	0.00000000000000939	TWA4_scaffold00001, whole genome shotgun sequence	N/A
PHROG	UHGV-0007439_11	phrog_1021	72.7	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0007439_11	1256908.HMPREF0373_00470	161.0	0	N/A	N/A
PHROG	UHGV-0007439_13	phrog_885	186.9	0	major tail protein	tail
eggNOG-mapper	UHGV-0007439_13	1256908.HMPREF0373_00471	161.0	0	N/A	N/A
structural_annotation	UHGV-0007439_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_14	phrog_957	43.9	0.0000000000035	head protein	head and packaging
eggNOG-mapper	UHGV-0007439_14	1235800.C819_02229	127.0	5.24e-36	N/A	N/A
structural_annotation	UHGV-0007439_14	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007439_15	UniRef90_UPI00189985AE	151.0	7.00649e-44	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0007439_15	1256908.HMPREF0373_00473	114.0	3.35e-30	N/A	N/A
structural_annotation	UHGV-0007439_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_16	phrog_1059	94.5	7e-28	head-tail adaptor	connector
UniRef90	UHGV-0007439_16	UniRef90_UPI001373E6F4	149.0	1.96182e-44	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0007439_16	1256908.HMPREF0373_00474	141.0	2.5896e-42	N/A	N/A
Pfam	UHGV-0007439_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0007439_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_17	phrog_1236	152.5	1.4013e-45	head protein	head and packaging
eggNOG-mapper	UHGV-0007439_17	1256908.HMPREF0373_00475	171.0	0	N/A	N/A
structural_annotation	UHGV-0007439_17	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_19	phrog_212	243.9	0	major head protein	head and packaging
UniRef90	UHGV-0007439_19	UniRef90_A0A3A6J9J0	620.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0007439_19	1235800.C819_02234	517.0	0	N/A	N/A
structural_annotation	UHGV-0007439_19	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_20	phrog_194	79.3	4.7e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0007439_20	UniRef90_UPI000E5C7AD7	243.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0007439_20	1235800.C819_02235	100.0	1.26e-23	Phage minor structural protein GP20	N/A
Pfam	UHGV-0007439_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0007439_20	PF06810	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_21	K01448	125.2	6.1e-37	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0007439_21	phrog_435	191.0	0	endolysin	lysis
UniRef90	UHGV-0007439_21	UniRef90_A0A6L5Y0L2	271.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0007439_21	411490.ANACAC_00597	187.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0007439_21	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0007439_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0007439_21	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_22	phrog_1129	75.9	3.4e-22	holin	lysis
UniRef90	UHGV-0007439_22	UniRef90_UPI000E5CE6BF	136.0	2.93999e-40	phage holin family protein	N/A
eggNOG-mapper	UHGV-0007439_22	411461.DORFOR_00721	105.0	1.09e-28	N/A	N/A
Pfam	UHGV-0007439_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0007439_22	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_24	phrog_6473	104.5	4.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0007439_24	469604.HMPREF0946_01090	106.0	1.1e-29	N/A	N/A
PHROG	UHGV-0007439_25	phrog_595	190.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0007439_25	UniRef90_UPI00189FDDA6	467.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0007439_25	1256908.HMPREF0373_00484	291.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0007439_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0007439_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007439_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_26	phrog_64	299.5	0	portal protein	head and packaging
UniRef90	UHGV-0007439_26	UniRef90_UPI000E5D0BC3	710.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0007439_26	1256908.HMPREF0373_00485	701.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0007439_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0007439_26	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_27	K06909	262.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0007439_27	phrog_3717	195.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0007439_27	UniRef90_U2RK66	608.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0007439_27	1256908.HMPREF0373_00486	608.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0007439_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0007439_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0007439_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0007439_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0007439_27	PF17288,PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_28	K07474	132.6	5.4e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0007439_28	phrog_51	142.3	2.79979e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0007439_28	UniRef90_UPI000E5D753C	211.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0007439_28	1029718.SFBM_0378	140.0	1.07999e-40	Terminase small subunit	N/A
Pfam	UHGV-0007439_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0007439_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0007439_28	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_31	phrog_2118	120.1	1.8e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_31	UniRef90_R5ZJF1	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0007439_31	610130.Closa_0730	128.0	1.27e-36	HNH endonuclease	N/A
Pfam	UHGV-0007439_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0007439_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0007439_31	COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_33	phrog_20593	53.3	0.0000000000000041	N/A	unknown function
AcrCatalog	UHGV-0007439_33	cluster_27421	35.8	0.00000976	NA	N/A
UniRef90	UHGV-0007439_35	UniRef90_R7BIL7	89.7	1.63e-20	Putative DNA topoisomerase I	N/A
eggNOG-mapper	UHGV-0007439_35	397290.C810_01514	59.3	0.00000000172	N/A	N/A
PHROG	UHGV-0007439_36	phrog_8684	110.6	1.2e-33	N/A	unknown function
UniRef90	UHGV-0007439_36	UniRef90_A0A3E4YM29	135.0	8.88e-39	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0007439_36	411470.RUMGNA_02199	86.7	8.35e-20	N/A	N/A
Pfam	UHGV-0007439_36	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0007439_36	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0007439_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_37	phrog_874	180.7	0	N/A	unknown function
UniRef90	UHGV-0007439_37	UniRef90_A0A6N7W7Q7	187.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0007439_37	411468.CLOSCI_00298	186.0	0	N/A	N/A
structural_annotation	UHGV-0007439_37	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_38	K00558	223.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0007439_38	phrog_116	266.1	0	DNA methyltransferase	other
UniRef90	UHGV-0007439_38	UniRef90_UPI000E43289D	917.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0007439_38	1235800.C819_02255	721.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0007439_38	MTase_II_00020	107.3	1.7e-32	Type II methyltransferase	RM
Pfam	UHGV-0007439_38	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0007439_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0007439_38	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_39	phrog_36	45.3	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0007439_39	UniRef90_A0A848B7Z4	82.8	1.03e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0007439_39	1121871.AUAT01000022_gene1841	81.6	4.88e-18	N/A	N/A
COG	UHGV-0007439_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0007439_39	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_40	phrog_10469	280.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_40	UniRef90_UPI00157072E1	340.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0007439_40	1567014.A0A0A7RTS3_9VIRU	247.0	0	calcium ion binding	N/A
Pfam	UHGV-0007439_40	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0007439_40	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0007439_40	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0007439_41	1203606.HMPREF1526_01684	85.9	2.24e-20	N/A	N/A
PHROG	UHGV-0007439_43	phrog_190	112.4	3.6e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_43	UniRef90_A0A6N7XIA3	122.0	7.33e-34	N/A	N/A
eggNOG-mapper	UHGV-0007439_43	563031.HMPREF0666_01122	86.3	5.34e-20	N/A	N/A
Pfam	UHGV-0007439_43	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0007439_43	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_44	K03111	143.2	2.59941e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0007439_44	phrog_44	130.3	1.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_44	UniRef90_A0A1C5PRE8	205.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0007439_44	1232447.BAHW02000038_gene2652	187.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0007439_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0007439_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0007439_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0007439_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0007439_44	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0007439_46	K07455	197.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0007439_46	phrog_148	211.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_46	UniRef90_A0A417UT37	476.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0007439_46	428127.EUBDOL_01509	311.0	0	RecT family	N/A
Pfam	UHGV-0007439_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0007439_46	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0007439_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0007439_46	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_48	phrog_20229	53.3	0.0000000000000044	N/A	unknown function
UniRef90	UHGV-0007439_48	UniRef90_A0A7X0HTF2	89.4	4.18e-22	ABC-type bacteriocin/lantibiotic exporter with double-glycine peptidase domain	N/A
eggNOG-mapper	UHGV-0007439_48	1141106.CAIB01000118_gene947	53.5	0.0000000184	N/A	N/A
structural_annotation	UHGV-0007439_48	TIGR04438	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_49	phrog_674	163.4	0	N/A	unknown function
UniRef90	UHGV-0007439_49	UniRef90_A0A844E1E5	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0007439_49	1095750.HMPREF9970_1676	142.0	5.1e-38	N/A	N/A
Pfam	UHGV-0007439_49	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0007439_49	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0007439_50	phrog_434	158.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007439_50	UniRef90_A0A1C5PRT3	358.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0007439_50	1095750.HMPREF9970_1677	317.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0007439_50	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0007439_50	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0007439_50	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0007439_50	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007439_51	PF00412	N/A	N/A	N/A	N/A