UHGV-0008017 (vOTU-062927)

Viral Genome: UHGV-0008017

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0008017
vOTU ID	vOTU-062927
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_24_2253__NODE_602_length_63948_cov_5.965743_1
Associated BioSample	SAMEA4766202
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.21 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.3
Jumbo phage	No

Genome content
Genome length (bp)	35,121
GC content	43.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	93%
Average CDS length (bps)	618.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0008017_1	phrog_33061	60.4	4.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0008017_1	411468.CLOSCI_01514	73.6	0.0000000000000526	N/A	N/A
PHROG	UHGV-0008017_2	phrog_1129	76.3	2.4e-22	holin	lysis
UniRef90	UHGV-0008017_2	UniRef90_A0A416AFW1	150.0	1.4013e-45	Enolase	N/A
eggNOG-mapper	UHGV-0008017_2	411461.DORFOR_00721	105.0	1.05e-28	N/A	N/A
Pfam	UHGV-0008017_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0008017_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_3	phrog_1863	58.5	4.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0008017_3	1226322.HMPREF1545_04027	72.0	0.00000000000000141	N/A	N/A
KOfam	UHGV-0008017_4	K01447	57.7	2.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0008017_4	phrog_7698	152.5	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0008017_4	UniRef90_A0A849CVD3	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0008017_4	1226322.HMPREF1545_04024	247.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0008017_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0008017_4	PF07538	N/A	N/A	Clostridial hydrophobic W	ChW
COG	UHGV-0008017_4	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0008017_4	PF05382,NF033743,COG5492,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_5	K04763	144.7	8.50588e-43	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0008017_5	phrog_216	98.4	5.7e-29	integrase	integration and excision
UniRef90	UHGV-0008017_5	UniRef90_A0A7U9SV36	128.0	6.96e-35	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0008017_5	397291.C804_01139	135.0	5.61e-37	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0008017_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008017_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
PHROG	UHGV-0008017_6	phrog_31398	120.5	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0008017_6	411459.RUMOBE_01721	116.0	1.49e-26	N/A	N/A
Pfam	UHGV-0008017_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0008017_8	phrog_18110	434.2	0	N/A	unknown function
UniRef90	UHGV-0008017_8	UniRef90_A0A373S6M8	499.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0008017_8	411459.RUMOBE_01723	382.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0008017_8	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0008017_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0008017_8	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0008017_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0008017_8	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0008017_9	phrog_33	47.4	0.00000000000045	distal tail protein Dit	tail
UniRef90	UHGV-0008017_9	UniRef90_UPI001D05C493	217.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0008017_9	411459.RUMOBE_00925	100.0	8.08e-23	phage tail	N/A
COG	UHGV-0008017_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0008017_9	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_10	K08757	46.8	2.2e-20	APOA1; apolipoprotein A-I	N/A
PHROG	UHGV-0008017_10	phrog_1272	382.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0008017_10	UniRef90_UPI001D0873A5	626.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0008017_10	180332.JTGN01000004_gene2272	354.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0008017_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0008017_10	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0008017_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0008017_10	PF10145,PF05384,TIGR01760,NF006545,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_11	phrog_25901	183.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0008017_11	411468.CLOSCI_01498	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0008017_11	PF10109	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_12	phrog_13494	91.0	8.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0008017_12	411468.CLOSCI_01497	75.5	2.26e-16	N/A	N/A
structural_annotation	UHGV-0008017_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_13	phrog_88	147.5	6.02558e-44	major tail protein	tail
UniRef90	UHGV-0008017_13	UniRef90_A0A412Q217	317.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0008017_13	411468.CLOSCI_01496	309.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0008017_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0008017_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008017_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_14	phrog_78	51.6	0.000000000000016	tail terminator	connector
UniRef90	UHGV-0008017_14	UniRef90_I2E8V8	68.6	0.00000000000167	Gp10	N/A
eggNOG-mapper	UHGV-0008017_14	411468.CLOSCI_01495	166.0	0	N/A	N/A
structural_annotation	UHGV-0008017_14	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_15	phrog_5	49.2	0.00000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0008017_15	UniRef90_B0NDG6	200.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0008017_15	411468.CLOSCI_01494	200.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0008017_15	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0008017_15	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_16	phrog_25	42.0	0.000000000015	head closure Hc1	connector
UniRef90	UHGV-0008017_16	UniRef90_A0A412Q2M1	112.0	5.72e-30	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0008017_16	742741.HMPREF9475_00427	104.0	7.42e-28	Phage head-tail joining protein	N/A
Pfam	UHGV-0008017_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0008017_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0008017_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008017_17	UniRef90_A0A412Q2I2	116.0	7.82e-32	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0008017_17	411468.CLOSCI_01492	100.0	3.31e-26	N/A	N/A
NCBIFam	UHGV-0008017_17	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0008017_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_18	phrog_10	227.9	0	major head protein	head and packaging
UniRef90	UHGV-0008017_18	UniRef90_A0A415K1C7	551.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008017_18	742741.HMPREF9475_00425	511.0	0	Phage capsid family	N/A
Pfam	UHGV-0008017_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0008017_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0008017_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0008017_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_19	K01358	107.5	1.6e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0008017_19	phrog_94	210.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0008017_19	UniRef90_A0A1C5T576	392.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0008017_19	742741.HMPREF9475_00424	372.0	0	Clp protease	N/A
Pfam	UHGV-0008017_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0008017_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0008017_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_20	phrog_12	283.1	0	portal protein	head and packaging
UniRef90	UHGV-0008017_20	UniRef90_A0A412Q229	608.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008017_20	411468.CLOSCI_01489	605.0	0	Phage portal protein	N/A
Pfam	UHGV-0008017_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0008017_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0008017_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0008017_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_21	phrog_9	374.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008017_21	UniRef90_A0A174ZPG1	982.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0008017_21	411468.CLOSCI_01488	959.0	0	Phage Terminase	N/A
Pfam	UHGV-0008017_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0008017_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0008017_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008017_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_22	phrog_83	103.0	2.6e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0008017_22	UniRef90_B0NDF9	259.0	0	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0008017_22	411468.CLOSCI_01487	259.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0008017_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0008017_22	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0008017_22	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0008017_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_23	phrog_144	86.6	2.6e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008017_23	UniRef90_B0NDF8	235.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0008017_23	411468.CLOSCI_01486	235.0	0	N/A	N/A
PHROG	UHGV-0008017_24	phrog_1558	118.2	5.7e-35	N/A	unknown function
UniRef90	UHGV-0008017_24	UniRef90_A0A174GQI9	80.9	2e-16	Sigma-70 region 4 type 2	N/A
eggNOG-mapper	UHGV-0008017_24	742741.HMPREF9475_00419	181.0	0	N/A	N/A
structural_annotation	UHGV-0008017_24	PF06530,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008017_26	UniRef90_A0A174QL97	77.0	2.2e-17	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0008017_26	610130.Closa_1388	100.0	1.64e-27	N/A	N/A
structural_annotation	UHGV-0008017_26	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_28	phrog_7566	103.7	8.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0008017_28	411459.RUMOBE_00948	101.0	1.43e-26	N/A	N/A
PHROG	UHGV-0008017_30	phrog_10714	58.4	1.2e-16	N/A	unknown function
UniRef90	UHGV-0008017_30	UniRef90_R5R2P7	95.1	2.43e-23	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0008017_30	537007.BLAHAN_05460	101.0	8.5e-27	N/A	N/A
PHROG	UHGV-0008017_31	phrog_2118	117.3	1.2e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008017_31	UniRef90_R5ZJF1	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008017_31	585503.HMPREF7545_1722	127.0	7.68e-36	HNH endonuclease	N/A
Pfam	UHGV-0008017_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008017_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0008017_31	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_32	phrog_24368	51.5	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0008017_32	1235792.C808_00071	52.0	0.000000919	N/A	N/A
PHROG	UHGV-0008017_33	phrog_15077	105.7	7.6e-31	N/A	unknown function
UniRef90	UHGV-0008017_33	UniRef90_A0A3E3IZW1	170.0	1.4013e-44	N/A	N/A
eggNOG-mapper	UHGV-0008017_33	1280698.AUJS01000007_gene1019	174.0	0	N/A	N/A
structural_annotation	UHGV-0008017_33	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_34	phrog_8470	234.9	0	N/A	unknown function
UniRef90	UHGV-0008017_34	UniRef90_UPI001D0E6B3F	1371.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0008017_34	411902.CLOBOL_05697	522.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0008017_34	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0008017_34	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_35	phrog_4433	62.7	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0008017_35	33035.JPJF01000122_gene2458	65.1	0.000000000781	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0008017_35	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0008017_35	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008017_36	411902.CLOBOL_05699	133.0	2.28e-37	N/A	N/A
UniRef90	UHGV-0008017_37	UniRef90_A0A417PKX1	296.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008017_37	1116472.MGMO_8c00720	62.4	0.000000000331	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
COG	UHGV-0008017_37	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0008017_37	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_38	phrog_3584	136.6	1.50001e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0008017_38	483218.BACPEC_01173	234.0	0	N/A	N/A
structural_annotation	UHGV-0008017_38	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008017_40	UniRef90_R5VU56	130.0	2.87e-37	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-0008017_40	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0008017_41	phrog_2668	43.4	0.0000000000031	N/A	unknown function
UniRef90	UHGV-0008017_41	UniRef90_UPI0018AB8424	95.9	1.6e-21	restriction endonuclease subunit S	N/A
eggNOG-mapper	UHGV-0008017_41	1201292.DR75_1653	69.7	0.000000000000493	Type I restriction modification DNA specificity domain	N/A
PADLOC	UHGV-0008017_41	Specificity_I_00134	41.5	0.000000000029	Type I specificity subunit	RM
structural_annotation	UHGV-0008017_41	PF01420,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_42	K03427	194.7	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0008017_42	phrog_6380	325.1	0	DNA methyltransferase	other
UniRef90	UHGV-0008017_42	UniRef90_UPI001D0F1512	757.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0008017_42	592010.GCWU000182_001448	277.0	0	HsdM N-terminal domain	N/A
PADLOC	UHGV-0008017_42	MTase_I_00005	202.7	0	Type I methyltransferase	RM
Pfam	UHGV-0008017_42	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0008017_42	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0008017_42	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_52	K22300	67.1	3.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0008017_52	phrog_8	53.4	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008017_52	UniRef90_UPI00189D7AB4	250.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008017_52	742741.HMPREF9475_00400	168.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0008017_52	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0008017_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008017_52	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0008017_53	K23779	54.1	0.0000000000000034	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0008017_53	phrog_3	41.3	0.00000000005	transcriptional repressor	transcription regulation
UniRef90	UHGV-0008017_53	UniRef90_UPI00189ED8FE	127.0	3.94e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008017_53	411468.CLOSCI_01455	97.8	2.63e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0008017_53	retron_type_VI_hth_cluster2_1	41.4	0.000000000038	N/A	Retron
Pfam	UHGV-0008017_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0008017_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A