UHGV-0008252 (vOTU-099081)

Viral Genome: UHGV-0008252

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0008252
vOTU ID	vOTU-099081
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_13_CHE0014TZ__NODE_574_length_77709_cov_5.191712_1
Associated BioSample	SAMEA4969127
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.56 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.97
Jumbo phage	No

Genome content
Genome length (bp)	29,198
GC content	46.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	95%
Average CDS length (bps)	616.47
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0008252_1	K01447	58.6	1.3e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0008252_1	phrog_7698	164.2	0	endolysin	lysis
UniRef90	UHGV-0008252_1	UniRef90_A0A5R9MKH3	513.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0008252_1	877411.JMMA01000002_gene2384	192.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0008252_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0008252_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0008252_1	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_2	phrog_1863	57.8	1.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0008252_2	1226322.HMPREF1545_04027	72.8	7.83e-16	N/A	N/A
PHROG	UHGV-0008252_3	phrog_13256	83.2	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0008252_3	1160721.RBI_II00522	89.7	4.23e-23	N/A	N/A
PHROG	UHGV-0008252_7	phrog_6616	48.7	5.1e-26	tail protein	tail
eggNOG-mapper	UHGV-0008252_7	1160721.RBI_II00526	716.0	0	N/A	N/A
structural_annotation	UHGV-0008252_7	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_8	phrog_1194	52.0	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0008252_8	1160721.RBI_II00527	100.0	1.72e-25	N/A	N/A
structural_annotation	UHGV-0008252_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_9	phrog_6900	266.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0008252_9	768726.HMPREF9178_1054	306.0	0	phage tail tape measure protein	N/A
COG	UHGV-0008252_9	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008252_9	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_10	phrog_1633	138.1	3.00004e-41	N/A	unknown function
UniRef90	UHGV-0008252_10	UniRef90_A0A139QHL2	124.0	3.32e-34	N/A	N/A
eggNOG-mapper	UHGV-0008252_10	873448.STRPO_0293	111.0	3.68e-30	N/A	N/A
Pfam	UHGV-0008252_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0008252_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_11	phrog_1526	83.8	1.4e-24	N/A	unknown function
UniRef90	UHGV-0008252_11	UniRef90_A0A0E4H642	67.0	0.00000000000125	N/A	N/A
eggNOG-mapper	UHGV-0008252_11	665950.HMPREF1025_02524	79.3	3.02e-18	N/A	N/A
PHROG	UHGV-0008252_12	phrog_117	163.2	0	major tail protein	tail
UniRef90	UHGV-0008252_12	UniRef90_A0A373V4D0	367.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0008252_12	1121864.OMO_02158	191.0	0	domain, Protein	N/A
COG	UHGV-0008252_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008252_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_13	phrog_123	62.9	5.4e-18	tail terminator	connector
UniRef90	UHGV-0008252_13	UniRef90_A0A2A5RIK6	119.0	1.24e-32	N/A	N/A
eggNOG-mapper	UHGV-0008252_13	1123263.AUKY01000068_gene495	125.0	7.7e-36	N/A	N/A
structural_annotation	UHGV-0008252_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_14	phrog_387	59.5	5.2e-17	neck protein	connector
eggNOG-mapper	UHGV-0008252_14	1423775.BAMN01000011_gene600	61.6	0.0000000000138	N/A	N/A
PHROG	UHGV-0008252_15	phrog_501	77.3	1.7e-22	head closure Hc1	connector
UniRef90	UHGV-0008252_15	UniRef90_R6CEU4	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0008252_15	748224.HMPREF9436_00693	137.0	9.32999e-41	N/A	N/A
structural_annotation	UHGV-0008252_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_16	phrog_137	53.6	0.0000000000000034	head-tail adaptor Ad1	connector
UniRef90	UHGV-0008252_16	UniRef90_R6C7E8	159.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0008252_16	873448.STRPO_0287	87.8	3.25e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0008252_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0008252_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_17	phrog_32396	127.2	4.7e-38	N/A	unknown function
UniRef90	UHGV-0008252_17	UniRef90_A0A373V3S9	558.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008252_17	936375.HMPREF1152_0679	326.0	0	Phage capsid family	N/A
Pfam	UHGV-0008252_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0008252_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0008252_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_18	phrog_233	66.4	7.5e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0008252_18	UniRef90_A0A7Z2B590	77.4	0.00000000000000289	N/A	N/A
eggNOG-mapper	UHGV-0008252_18	1280698.AUJS01000007_gene1037	67.4	0.00000000000369	N/A	N/A
Pfam	UHGV-0008252_18	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0008252_18	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_19	phrog_17688	281.4	0	N/A	unknown function
UniRef90	UHGV-0008252_19	UniRef90_A0A373V412	823.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0008252_19	936375.HMPREF1152_0677	500.0	0	phage terminase, large subunit	N/A
COG	UHGV-0008252_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008252_19	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_20	phrog_872	96.0	4.4e-28	N/A	unknown function
UniRef90	UHGV-0008252_20	UniRef90_A0A373V416	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008252_20	1226322.HMPREF1545_00781	129.0	3.15e-35	N/A	N/A
Pfam	UHGV-0008252_20	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0008252_20	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0008252_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_21	phrog_34144	69.5	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0008252_21	742742.HMPREF9452_00763	81.3	5.01e-20	N/A	N/A
structural_annotation	UHGV-0008252_21	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_22	phrog_2494	169.6	0	minor head protein	head and packaging
UniRef90	UHGV-0008252_22	UniRef90_A0A316LS12	175.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0008252_22	875454.BAEW01000017_gene1600	149.0	7.72e-39	N/A	N/A
PHROG	UHGV-0008252_23	phrog_104	248.2	0	portal protein	head and packaging
UniRef90	UHGV-0008252_23	UniRef90_A0A373V3S0	800.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008252_23	1280698.AUJS01000007_gene1033	493.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0008252_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_24	phrog_338	98.5	7.8e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_24	UniRef90_A0A373V3S6	233.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008252_24	1280698.AUJS01000007_gene1032	174.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0008252_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008252_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0008252_24	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_25	phrog_36	44.8	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008252_25	UniRef90_A0A374HLM1	242.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0008252_25	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_26	phrog_22543	40.0	3.4e-20	N/A	unknown function
PHROG	UHGV-0008252_27	phrog_986	86.3	2.8e-25	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_27	UniRef90_UPI00189DC125	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008252_27	2754.EH55_06950	67.8	0.000000000000242	N/A	N/A
Pfam	UHGV-0008252_27	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0008252_27	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008252_28	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_29	phrog_140	85.4	7.6e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_29	UniRef90_A0A373Y8T3	261.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0008252_29	411462.DORLON_00806	194.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0008252_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0008252_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0008252_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0008252_30	K07505	435.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0008252_30	phrog_2597	1194.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_30	UniRef90_A0A1C6E992	1512.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0008252_30	394503.Ccel_3304	1022.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0008252_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0008252_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0008252_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0008252_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0008252_31	K17677	349.1	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0008252_31	phrog_16	283.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_31	UniRef90_A0A1C6E943	1042.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-0008252_31	1235792.C808_05388	815.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0008252_31	mREase_IV_00005	121.0	1.1e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0008252_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0008252_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0008252_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0008252_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_32	phrog_2698	193.4	0	N/A	unknown function
UniRef90	UHGV-0008252_32	UniRef90_UPI001D0882DA	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008252_32	742723.HMPREF9477_00927	166.0	0	N/A	N/A
structural_annotation	UHGV-0008252_32	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_33	phrog_124	243.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008252_33	UniRef90_UPI000F52E538	481.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0008252_33	1235792.C808_05390	422.0	0	AAA domain	N/A
Pfam	UHGV-0008252_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0008252_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0008252_34	K03546	59.5	4.4e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0008252_34	phrog_1499	469.3	0	N/A	unknown function
UniRef90	UHGV-0008252_34	UniRef90_A0A1C6E8X2	751.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0008252_34	641112.ACOK01000073_gene2873	513.0	0	domain protein	N/A
Pfam	UHGV-0008252_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0008252_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0008252_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008252_41	MF_00273	N/A	N/A	N/A	N/A
KOfam	UHGV-0008252_42	K00390	48.1	6.2e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0008252_42	phrog_424	121.8	4.8e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0008252_42	UniRef90_UPI001899D561	456.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0008252_42	397291.C804_05723	265.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0008252_42	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0008252_42	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0008252_42	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0008252_43	K07729	47.9	0.00000000000028	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0008252_43	UniRef90_A0A847PN47	74.7	6.75e-16	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0008252_43	718252.FP2_16270	66.6	0.000000000000347	sequence-specific DNA binding	N/A
Pfam	UHGV-0008252_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008252_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0008252_44	K07729	51.5	0.000000000000022	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0008252_44	phrog_8	69.0	1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008252_44	UniRef90_UPI0019D26C1B	155.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008252_44	203119.Cthe_0364	77.4	7.71e-16	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0008252_44	retron_type_VI_hth_cluster2_1	42.1	0.000000000018	N/A	Retron
Pfam	UHGV-0008252_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008252_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008252_44	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0008252_45	phrog_87	72.8	3.6e-21	metallo-protease	other
UniRef90	UHGV-0008252_45	UniRef90_A0A374HVM5	264.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0008252_45	428125.CLOLEP_02739	97.4	4.35e-24	N/A	N/A
Pfam	UHGV-0008252_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0008252_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0008252_45	PF06114,COG2856	N/A	N/A	N/A	N/A