UHGV-0008644 (vOTU-094546)

Viral Genome: UHGV-0008644

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0008644
vOTU ID	vOTU-094546
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_13_CHE1006Z__NODE_230_length_130290_cov_11.379954_1
Associated BioSample	SAMEA4969129
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.32 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.4
Jumbo phage	No

Genome content
Genome length (bp)	31,182
GC content	47.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	621.19
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0008644_6	PF01381,NF041575,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0008644_7	K22300	50.3	0.000000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0008644_7	phrog_2967	44.0	0.0000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008644_7	UniRef90_A0A350TVJ4	115.0	3.16e-32	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_7	457415.HMPREF1006_02520	48.9	0.00000336	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0008644_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008644_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0008644_8	PF01381,NF041575,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_9	phrog_7445	52.0	0.000000000000012	N/A	unknown function
UniRef90	UHGV-0008644_9	UniRef90_A0A4R2RNJ6	67.0	0.00000000000633	PcfK-like protein	N/A
Pfam	UHGV-0008644_9	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0008644_9	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_10	phrog_8470	269.9	0	N/A	unknown function
UniRef90	UHGV-0008644_10	UniRef90_UPI001875A728	526.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_10	1157490.EL26_01845	181.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0008644_10	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0008644_10	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_11	phrog_15609	167.9	0	N/A	unknown function
UniRef90	UHGV-0008644_11	UniRef90_UPI001875FF23	274.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008644_11	1007096.BAGW01000031_gene118	152.0	7.65e-40	N/A	N/A
Pfam	UHGV-0008644_11	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0008644_11	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0008644_11	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_13	phrog_3584	183.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008644_13	UniRef90_I2E8X7	111.0	6.26e-26	Gp31	N/A
eggNOG-mapper	UHGV-0008644_13	536233.CLO_3655	110.0	4.02e-26	N/A	N/A
structural_annotation	UHGV-0008644_13	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_14	phrog_7566	85.8	3.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0008644_14	1280698.AUJS01000007_gene1020	65.5	0.0000000000057	N/A	N/A
KOfam	UHGV-0008644_16	K03111	117.5	1.8e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008644_16	phrog_44	109.7	1.6e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008644_16	UniRef90_A0A350TVI6	265.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008644_16	97138.C820_02339	144.0	7.9902e-42	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0008644_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0008644_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0008644_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0008644_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0008644_16	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_17	phrog_10714	55.8	8e-16	N/A	unknown function
UniRef90	UHGV-0008644_17	UniRef90_R5R2P7	86.7	5.5e-20	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0008644_17	428127.EUBDOL_01238	101.0	8.83e-27	N/A	N/A
eggNOG-mapper	UHGV-0008644_18	397290.C810_01492	54.3	0.0000007	N/A	N/A
PHROG	UHGV-0008644_19	phrog_4292	57.0	2.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0008644_19	485916.Dtox_4212	46.6	0.00000192	N/A	N/A
PHROG	UHGV-0008644_20	phrog_11237	88.3	8.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0008644_20	610130.Closa_0738	108.0	1.1e-28	N/A	N/A
PHROG	UHGV-0008644_21	phrog_13890	40.6	0.000000000038	N/A	unknown function
structural_annotation	UHGV-0008644_21	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0008644_22	K07451	42.0	0.000000000015	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0008644_22	phrog_119	80.3	2.7e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008644_22	UniRef90_G9YSB5	146.0	2.28412e-43	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_22	926561.KB900623_gene763	102.0	1.07e-26	HNH nucleases	N/A
Pfam	UHGV-0008644_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008644_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0008644_23	phrog_5110	83.3	1.9e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0008644_23	UniRef90_UPI00195E8788	85.9	2.39e-19	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0008644_23	936140.AEOT01000014_gene1353	52.0	0.000000514	N/A	N/A
Pfam	UHGV-0008644_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0008644_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_24	phrog_9	228.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008644_24	UniRef90_UPI0018737C02	857.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0008644_24	1235792.C808_00083	641.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0008644_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0008644_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008644_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_25	phrog_12	110.2	1.2e-32	portal protein	head and packaging
UniRef90	UHGV-0008644_25	UniRef90_G9YSB8	446.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0008644_25	349161.Dred_2606	323.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0008644_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0008644_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0008644_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0008644_26	K01358	139.0	4.39994e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0008644_26	phrog_94	253.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0008644_26	UniRef90_A0A1C6FFN6	358.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0008644_26	349161.Dred_2605	282.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0008644_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0008644_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0008644_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_27	phrog_10	139.5	3.50002e-41	major head protein	head and packaging
UniRef90	UHGV-0008644_27	UniRef90_A0A328U7P3	618.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008644_27	1235792.C808_00086	469.0	0	Phage capsid family	N/A
Pfam	UHGV-0008644_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0008644_27	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0008644_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0008644_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0008644_27	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_28	phrog_749	74.8	8.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0008644_28	349161.Dred_2603	85.5	2.65e-20	N/A	N/A
PHROG	UHGV-0008644_29	phrog_19734	105.7	3.7e-31	N/A	unknown function
UniRef90	UHGV-0008644_29	UniRef90_A0A6I7GNS7	123.0	1.21e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0008644_29	349161.Dred_2602	90.5	8.17e-22	N/A	N/A
structural_annotation	UHGV-0008644_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008644_30	999413.HMPREF1094_02005	89.4	8.69e-22	N/A	N/A
structural_annotation	UHGV-0008644_30	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_31	phrog_5	51.4	0.000000000000019	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0008644_31	1235798.C817_04589	118.0	1.26e-31	N/A	N/A
NCBIFam	UHGV-0008644_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0008644_31	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_32	phrog_88	109.8	2.3e-32	major tail protein	tail
UniRef90	UHGV-0008644_32	UniRef90_G9YSC5	238.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0008644_32	33035.JPJF01000039_gene278	111.0	5.79e-28	N/A	N/A
NCBIFam	UHGV-0008644_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0008644_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_34	phrog_2115	41.1	0.000000000033	tail protein	tail
eggNOG-mapper	UHGV-0008644_34	509191.AEDB02000020_gene3251	55.1	0.0000000901	N/A	N/A
structural_annotation	UHGV-0008644_34	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_36	phrog_8263	86.5	1.1e-25	N/A	unknown function
UniRef90	UHGV-0008644_36	UniRef90_UPI001D063C90	114.0	6.47e-26	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0008644_36	1485543.JMME01000005_gene857	95.1	3.33e-20	N/A	N/A
KOfam	UHGV-0008644_37	K20283	62.6	1.3e-19	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0008644_37	phrog_1533	359.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0008644_37	UniRef90_A0A7X5IAQ7	389.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0008644_37	1235793.C809_01928	348.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0008644_37	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0008644_37	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0008644_37	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0008644_38	phrog_33	105.5	8.4e-31	distal tail protein Dit	tail
UniRef90	UHGV-0008644_38	UniRef90_R5ADI0	341.0	0	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0008644_38	1262449.CP6013_2095	170.0	0	tail component	N/A
NCBIFam	UHGV-0008644_38	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0008644_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0008644_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_39	phrog_16573	48.6	0.00000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0008644_39	1499683.CCFF01000005_gene81	69.7	0.00000000127	N/A	N/A
Pfam	UHGV-0008644_39	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0008644_39	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
UniRef90	UHGV-0008644_40	UniRef90_R5ANH3	99.8	1.5e-25	Putative flagellar basal-body rod protein	N/A
PHROG	UHGV-0008644_41	phrog_2310	60.7	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0008644_41	1460635.JCM19038_2823	47.8	0.000000579	N/A	N/A
PHROG	UHGV-0008644_42	phrog_1067	280.3	0	minor head protein	head and packaging
UniRef90	UHGV-0008644_42	UniRef90_A0A396NSB6	722.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_42	1443125.Z962_07985	222.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0008644_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0008644_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0008644_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0008644_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0008644_43	phrog_937	55.4	0.0000000000000011	hemolysin	other
eggNOG-mapper	UHGV-0008644_43	1519439.JPJG01000023_gene533	64.7	0.00000000000248	N/A	N/A
PHROG	UHGV-0008644_45	phrog_36029	133.5	1.1e-39	N/A	unknown function
UniRef90	UHGV-0008644_45	UniRef90_A0A318KD97	108.0	3.23e-28	Superfamily 6 holin (LLH)	N/A
eggNOG-mapper	UHGV-0008644_45	411468.CLOSCI_01511	127.0	1.22e-36	N/A	N/A
KOfam	UHGV-0008644_46	K21471	50.6	0.000000000000051	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0008644_46	UniRef90_A0A0X8VCT6	271.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_46	742735.HMPREF9467_02997	103.0	7.69e-24	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
COG	UHGV-0008644_46	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0008644_46	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008644_47	UniRef90_UPI0018A02140	259.0	0	HEPN domain-containing protein	N/A
eggNOG-mapper	UHGV-0008644_47	1499684.CCNP01000020_gene2265	122.0	9.64e-30	N/A	N/A