UHGV-0008913 (vOTU-096590)

Viral Genome: UHGV-0008913

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0008913
vOTU ID	vOTU-096590
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_2768_length_46507_cov_29.449494_1
Associated BioSample	SAMEA4969165
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.35
Jumbo phage	No

Genome content
Genome length (bp)	22,553
GC content	55.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	94%
Average CDS length (bps)	782.33
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0008913_1	phrog_997	120.1	1.3e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008913_1	UniRef90_R6MCS9	110.0	7.71e-29	N/A	N/A
eggNOG-mapper	UHGV-0008913_1	1519439.JPJG01000059_gene1910	177.0	0	N/A	N/A
PHROG	UHGV-0008913_2	phrog_1029	227.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0008913_2	1203606.HMPREF1526_01890	375.0	0	N/A	N/A
structural_annotation	UHGV-0008913_2	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_3	phrog_5781	66.0	5.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0008913_3	573061.Clocel_3558	80.5	2.8e-17	N/A	N/A
Pfam	UHGV-0008913_3	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0008913_3	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0008913_3	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_4	phrog_3136	122.4	1.8e-36	N/A	unknown function
UniRef90	UHGV-0008913_4	UniRef90_A0A3D0HBD2	125.0	3.67e-33	ASCH domain-containing protein	N/A
Pfam	UHGV-0008913_4	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0008913_4	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0008913_4	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_5	phrog_36	56.5	5.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008913_5	UniRef90_UPI001C10AB33	123.0	2.21e-33	N/A	N/A
eggNOG-mapper	UHGV-0008913_5	428125.CLOLEP_01806	102.0	1.02e-25	N/A	N/A
Pfam	UHGV-0008913_5	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0008913_5	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008913_6	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0008913_7	K06909	396.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0008913_7	phrog_5653	147.0	1.09301e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0008913_7	UniRef90_A0A416S378	632.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0008913_7	33035.JPJF01000106_gene3136	596.0	0	Terminase small subunit	N/A
Pfam	UHGV-0008913_7	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0008913_7	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0008913_7	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0008913_7	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0008913_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0008913_7	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_8	phrog_1233	95.2	7.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0008913_8	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0008913_8	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_9	phrog_533	209.2	0	portal protein	head and packaging
UniRef90	UHGV-0008913_9	UniRef90_A0A173TY48	341.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0008913_9	33035.JPJF01000106_gene3135	322.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0008913_9	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_10	phrog_581	246.8	0	minor head protein	head and packaging
UniRef90	UHGV-0008913_10	UniRef90_A0A3D4T830	342.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0008913_10	476272.RUMHYD_01761	221.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0008913_10	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0008913_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008913_10	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_11	phrog_194	42.7	0.0000000000098	head scaffolding protein	head and packaging
UniRef90	UHGV-0008913_11	UniRef90_UPI001C0EBA51	127.0	3.38e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0008913_11	1539298.JO41_08210	63.2	0.000000000913	Phage minor structural protein GP20	N/A
Pfam	UHGV-0008913_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0008913_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_12	phrog_267	54.7	0.0000000000000014	major head protein	head and packaging
eggNOG-mapper	UHGV-0008913_12	1235799.C818_04223	159.0	2.10195e-44	N/A	N/A
structural_annotation	UHGV-0008913_12	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_13	phrog_541	67.3	2.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0008913_13	33035.JPJF01000106_gene3131	73.6	0.000000000000021	N/A	N/A
PHROG	UHGV-0008913_14	phrog_3366	53.7	0.000000000000004	N/A	unknown function
structural_annotation	UHGV-0008913_14	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_15	phrog_556	63.8	6e-19	minor head protein	head and packaging
UniRef90	UHGV-0008913_15	UniRef90_A0A1H7MNM8	117.0	1.14e-30	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0008913_15	476272.RUMHYD_01780	114.0	1.7e-30	N/A	N/A
Pfam	UHGV-0008913_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0008913_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_16	phrog_3266	67.2	2.1e-19	tail completion	connector
eggNOG-mapper	UHGV-0008913_16	476272.RUMHYD_01781	122.0	4.78e-33	N/A	N/A
structural_annotation	UHGV-0008913_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_17	phrog_3099	88.0	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0008913_17	693746.OBV_18150	224.0	0	N/A	N/A
structural_annotation	UHGV-0008913_17	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_18	phrog_11299	97.1	1.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0008913_18	1449050.JNLE01000003_gene3883	63.5	0.000000000111	N/A	N/A
structural_annotation	UHGV-0008913_18	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_19	phrog_706	109.1	3.8e-32	N/A	unknown function
UniRef90	UHGV-0008913_19	UniRef90_UPI00164D7633	178.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0008913_19	693746.OBV_18170	171.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0008913_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0008913_19	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_20	phrog_1535	119.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0008913_20	UniRef90_A0A810PX76	115.0	4.95e-23	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0008913_20	1235797.C816_04182	207.0	0	SLT domain	N/A
COG	UHGV-0008913_20	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008913_21	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_22	phrog_6616	68.3	1.2e-20	tail protein	tail
structural_annotation	UHGV-0008913_22	PF13550,PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008913_23	411473.RUMCAL_00420	65.9	0.0000000264	nuclear chromosome segregation	N/A
COG	UHGV-0008913_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0008913_24	PF00629,NF033675	N/A	N/A	N/A	N/A
KOfam	UHGV-0008913_25	K01447	70.1	4e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0008913_25	phrog_5182	167.2	0	endolysin	lysis
UniRef90	UHGV-0008913_25	UniRef90_R5AZE6	427.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0008913_25	397288.C806_00777	197.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0008913_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0008913_25	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0008913_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0008913_25	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_26	phrog_199	63.1	3.3e-18	holin	lysis
UniRef90	UHGV-0008913_26	UniRef90_A0A3D1VF24	274.0	0	Holin	N/A
eggNOG-mapper	UHGV-0008913_26	742738.HMPREF9460_01388	152.0	4.2039e-45	Bacteriophage holin family	N/A
Pfam	UHGV-0008913_26	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008913_26	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008913_26	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008913_26	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0008913_27	phrog_199	53.4	0.0000000000000029	holin	lysis
UniRef90	UHGV-0008913_27	UniRef90_R5AQ05	127.0	5.28e-35	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0008913_27	742738.HMPREF9460_01388	99.8	1.02e-24	Bacteriophage holin family	N/A
Pfam	UHGV-0008913_27	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008913_27	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008913_27	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008913_27	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A