UHGV-0009251 (vOTU-170605)

Viral Genome: UHGV-0009251

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009251
vOTU ID	vOTU-170605
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_24_1660__NODE_3747_length_32994_cov_8.044870_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.24 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.89
Jumbo phage	No

Genome content
Genome length (bp)	19,942
GC content	47.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	90%
Average CDS length (bps)	664.89
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0009251_2	phrog_32514	41.7	0.000000000012	N/A	unknown function
KOfam	UHGV-0009251_3	K21471	49.5	0.00000000000011	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0009251_3	UniRef90_A0A0X8VCT6	268.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009251_3	411902.CLOBOL_04837	102.0	9.94e-23	Phage lysozyme	N/A
COG	UHGV-0009251_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0009251_3	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_4	phrog_36029	139.3	1.70006e-41	N/A	unknown function
UniRef90	UHGV-0009251_4	UniRef90_A0A318KD97	108.0	2.28e-28	Superfamily 6 holin (LLH)	N/A
eggNOG-mapper	UHGV-0009251_4	411468.CLOSCI_01511	130.0	1.05e-37	N/A	N/A
PHROG	UHGV-0009251_6	phrog_937	51.9	0.000000000000014	hemolysin	other
eggNOG-mapper	UHGV-0009251_6	1519439.JPJG01000023_gene533	68.9	0.000000000000054	N/A	N/A
PHROG	UHGV-0009251_7	phrog_1067	269.0	0	minor head protein	head and packaging
UniRef90	UHGV-0009251_7	UniRef90_A0A396NSB6	702.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0009251_7	1443125.Z962_07985	216.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0009251_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0009251_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0009251_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0009251_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_8	phrog_2310	65.1	5.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0009251_8	1460635.JCM19038_2823	50.4	0.0000000495	N/A	N/A
PHROG	UHGV-0009251_10	phrog_3639	54.4	0.0000000000000018	minor tail protein	tail
UniRef90	UHGV-0009251_10	UniRef90_R5AIX9	171.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0009251_10	1232449.BAHV02000010_gene2732	58.9	0.000000493	N/A	N/A
Pfam	UHGV-0009251_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0009251_10	PF10651,PF21722,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_11	phrog_33	100.4	3e-29	distal tail protein Dit	tail
UniRef90	UHGV-0009251_11	UniRef90_A0A350TW29	457.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0009251_11	545697.HMPREF0216_00910	181.0	0	tail component	N/A
Pfam	UHGV-0009251_11	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0009251_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0009251_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0009251_12	K10421	82.0	1.6e-24	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0009251_12	phrog_1533	516.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0009251_12	UniRef90_A0A350TW28	1180.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0009251_12	411473.RUMCAL_03183	489.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0009251_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0009251_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0009251_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0009251_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009251_13	1121423.JONT01000041_gene954	90.1	6.11e-23	N/A	N/A
eggNOG-mapper	UHGV-0009251_14	1280689.AUJC01000007_gene3310	61.6	0.0000000000496	N/A	N/A
structural_annotation	UHGV-0009251_14	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_15	phrog_2175	95.9	4.1e-28	protein with Ig domain	other
eggNOG-mapper	UHGV-0009251_15	755731.Clo1100_0552	238.0	0	N/A	N/A
structural_annotation	UHGV-0009251_15	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_16	phrog_78	49.5	0.000000000000083	tail terminator	connector
UniRef90	UHGV-0009251_16	UniRef90_E7GJW4	56.6	0.0000000387	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0009251_16	1410624.JNKK01000045_gene555	70.9	0.0000000000000188	N/A	N/A
structural_annotation	UHGV-0009251_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_17	phrog_5	52.3	0.000000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0009251_17	UniRef90_A0A7V7BBM4	116.0	3.75e-31	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0009251_17	1123314.AUIO01000016_gene844	102.0	1.35e-26	N/A	N/A
Pfam	UHGV-0009251_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0009251_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_18	phrog_1951	72.5	4.2e-21	head-tail adaptor	connector
UniRef90	UHGV-0009251_18	UniRef90_UPI001B3C8C78	60.5	0.00000000115	phage head closure protein	N/A
eggNOG-mapper	UHGV-0009251_18	1033738.CAEP01000018_gene3675	70.9	0.0000000000000167	head-tail adaptor	N/A
NCBIFam	UHGV-0009251_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0009251_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-0009251_19	phrog_5223	60.5	2.2e-17	neck protein	connector
UniRef90	UHGV-0009251_19	UniRef90_B6W9Y5	94.0	2.93e-23	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0009251_19	561177.ANHYDRO_01411	94.0	4.92e-24	N/A	N/A
structural_annotation	UHGV-0009251_19	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_20	phrog_10	118.4	7.4e-35	major head protein	head and packaging
UniRef90	UHGV-0009251_20	UniRef90_A0A350TW17	645.0	0	Phage major capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0009251_20	411470.RUMGNA_02065	345.0	0	N/A	N/A
Pfam	UHGV-0009251_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0009251_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0009251_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
KOfam	UHGV-0009251_21	K01358	139.5	3.39997e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0009251_21	phrog_94	218.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0009251_21	UniRef90_A0A350TW16	273.0	0	Peptidase (Fragment)	N/A
eggNOG-mapper	UHGV-0009251_21	1033738.CAEP01000160_gene2013	209.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0009251_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0009251_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0009251_21	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_22	phrog_12	183.4	0	portal protein	head and packaging
UniRef90	UHGV-0009251_22	UniRef90_A0A1T4XJH4	525.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0009251_22	1235793.C809_01918	464.0	0	Phage portal protein	N/A
Pfam	UHGV-0009251_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0009251_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0009251_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_23	phrog_9	374.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009251_23	UniRef90_A0A350U004	1118.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0009251_23	626523.GCWU000342_01028	673.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0009251_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0009251_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0009251_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0009251_23	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_24	phrog_1066	105.5	2.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0009251_24	1094508.Tsac_2428	105.0	2.21e-27	N/A	N/A
PHROG	UHGV-0009251_25	phrog_119	53.0	0.0000000000000051	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009251_25	UniRef90_A0A350U006	224.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0009251_25	318464.IO99_13775	119.0	1.96e-33	HNH nucleases	N/A
Pfam	UHGV-0009251_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0009251_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0009251_26	NF040976	N/A	N/A	N/A	N/A
PHROG	UHGV-0009251_27	phrog_11237	60.4	3.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0009251_27	610130.Closa_0738	76.6	8.86e-17	N/A	N/A