UHGV-0009332 (vOTU-010497)

Viral Genome: UHGV-0009332

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009332
vOTU ID	vOTU-010497
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_C-REDO_A_11_1511__NODE_531_length_56135_cov_7.997574
Associated BioSample	SAMEA4765803
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.36
Jumbo phage	No

Genome content
Genome length (bp)	56,135
GC content	54.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	82
CDS density	94%
Average CDS length (bps)	644.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009332_3	K01160	51.0	0.000000000000036	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
UniRef90	UHGV-0009332_3	UniRef90_A0A1V5ZUM0	115.0	1.52e-30	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0009332_3	469604.HMPREF0946_00819	50.8	0.00000225	N/A	N/A
structural_annotation	UHGV-0009332_3	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0009332_5	K00390	94.7	9e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0009332_5	phrog_424	117.9	7.9e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009332_5	UniRef90_A0A3D3Y454	472.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0009332_5	1408437.JNJN01000032_gene2312	314.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0009332_5	BrxP_00001	74.7	3.6e-22	BrxP	BREX
Pfam	UHGV-0009332_5	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0009332_5	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0009332_5	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_8	phrog_5781	81.0	1.4e-23	N/A	unknown function
UniRef90	UHGV-0009332_8	UniRef90_A0A2V2GDQ1	117.0	2.39e-32	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0009332_8	573061.Clocel_3558	97.1	8.65e-25	N/A	N/A
Pfam	UHGV-0009332_8	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0009332_8	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0009332_8	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_10	phrog_38832	77.2	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0009332_10	665956.HMPREF1032_00143	98.2	7.46e-24	N/A	N/A
structural_annotation	UHGV-0009332_10	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_14	UniRef90_R6QWY1	114.0	2.92e-31	28	N/A
dbAPIS	UHGV-0009332_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-0009332_16	UniRef90_A0A8D9PDT5	53.1	0.000000559	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0009332_18	UniRef90_A0A1I0VIB3	67.4	0.00000000000166	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
UniRef90	UHGV-0009332_19	UniRef90_A0A374AB28	175.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0009332_19	935948.KE386495_gene2250	93.2	1.54e-21	N/A	N/A
Pfam	UHGV-0009332_19	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0009332_19	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_23	phrog_801	80.2	3.1e-23	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0009332_23	UniRef90_A0A2K9P078	108.0	1.33e-28	N/A	N/A
eggNOG-mapper	UHGV-0009332_23	1366055.S5MLS6_9CAUD	69.7	0.000000000000572	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0009332_23	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0009332_23	PF18909	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009332_25	1134413.ANNK01000120_gene2036	60.8	0.000000000839	N/A	N/A
NCBIFam	UHGV-0009332_25	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0009332_25	PF05263,TIGR01636,COG1595	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009332_27	1160721.RBI_I00206	55.5	0.00000000135	N/A	N/A
structural_annotation	UHGV-0009332_27	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_28	phrog_6160	66.0	5.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0009332_28	314345.SPV1_06379	94.7	8.49e-20	N/A	N/A
eggNOG-mapper	UHGV-0009332_31	931276.Cspa_c57180	64.3	0.0000000000439	DNA-packaging protein gp3	N/A
structural_annotation	UHGV-0009332_31	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_32	phrog_38	353.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009332_32	UniRef90_A0A845QMQ7	476.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0009332_32	755731.Clo1100_2438	399.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0009332_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0009332_32	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0009332_32	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0009332_32	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009332_32	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_34	phrog_156	111.9	4.2e-33	portal protein	head and packaging
eggNOG-mapper	UHGV-0009332_34	693746.OBV_01670	248.0	0	N/A	N/A
structural_annotation	UHGV-0009332_34	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_36	phrog_422	201.9	0	major head protein	head and packaging
UniRef90	UHGV-0009332_36	UniRef90_UPI00124590F3	296.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0009332_36	755731.Clo1100_2434	271.0	0	N/A	N/A
structural_annotation	UHGV-0009332_36	PF19821,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_37	phrog_13046	52.4	0.0000000000000079	N/A	unknown function
structural_annotation	UHGV-0009332_37	PF20387	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_38	UniRef90_A0A847CX66	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009332_38	871968.DESME_08885	138.0	1.48e-31	N/A	N/A
structural_annotation	UHGV-0009332_38	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
KOfam	UHGV-0009332_40	K08131	127.9	3.2e-38	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0009332_40	phrog_819	106.2	8.3e-40	tail protein	tail
eggNOG-mapper	UHGV-0009332_40	1519439.JPJG01000060_gene1892	110.0	2.6e-22	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0009332_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0009332_40	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0009332_40	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_41	phrog_10993	223.9	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0009332_41	UniRef90_A0A350TI55	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009332_41	718252.FP2_16970	221.0	0	N/A	N/A
Pfam	UHGV-0009332_41	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0009332_41	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009332_44	1519439.JPJG01000060_gene1895	108.0	3.06e-27	N/A	N/A
structural_annotation	UHGV-0009332_44	PF10618	N/A	N/A	N/A	N/A
KOfam	UHGV-0009332_45	K18454	45.3	0.0000000000011	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0009332_45	phrog_30034	73.9	3e-21	N/A	unknown function
UniRef90	UHGV-0009332_45	UniRef90_A0A1C5VT90	142.0	5.27e-41	Chitinase A1	N/A
eggNOG-mapper	UHGV-0009332_45	1235796.C815_00903	128.0	2.2e-35	N/A	N/A
Pfam	UHGV-0009332_45	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0009332_45	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_46	phrog_937	62.8	6.2e-18	hemolysin	other
eggNOG-mapper	UHGV-0009332_46	1519439.JPJG01000023_gene533	74.3	4.42e-16	N/A	N/A
PHROG	UHGV-0009332_48	phrog_13256	51.5	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0009332_48	1160721.RBI_I01912	53.9	0.00000000911	N/A	N/A
KOfam	UHGV-0009332_49	K01447	101.4	1.2e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0009332_49	phrog_670	119.6	3.1e-35	endolysin	lysis
UniRef90	UHGV-0009332_49	UniRef90_A0A3D4VSU2	158.0	7.00649e-45	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0009332_49	1120998.AUFC01000016_gene8	103.0	2.52e-24	Ami_2	N/A
Pfam	UHGV-0009332_49	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0009332_49	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0009332_49	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009332_51	1226322.HMPREF1545_00787	172.0	2.06e-39	N/A	N/A
Pfam	UHGV-0009332_51	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0009332_53	K01494	82.0	3.5e-24	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-0009332_53	phrog_1663	47.1	0.00000000000013	dCTP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009332_53	UniRef90_R6HXT8	196.0	0	Deoxycytidine deaminase-like protein	N/A
eggNOG-mapper	UHGV-0009332_53	591001.Acfer_0591	180.0	0	Belongs to the dCTP deaminase family	N/A
Pfam	UHGV-0009332_53	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0009332_53	COG0717	N/A	N/A	dCTP deaminase	N/A
structural_annotation	UHGV-0009332_53	PF06559,MF_00146,TIGR02274,COG0717	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_56	UniRef90_A0A7M1RS47	75.1	0.0000000000000357	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0009332_56	1408437.JNJN01000043_gene801	87.8	2.35e-19	N/A	N/A
KOfam	UHGV-0009332_57	K06400	377.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0009332_57	phrog_95	364.2	0	integrase	integration and excision
UniRef90	UHGV-0009332_57	UniRef90_UPI00189960B8	501.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0009332_57	1235835.C814_00825	415.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0009332_57	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0009332_57	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0009332_57	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0009332_57	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0009332_57	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_58	UniRef90_A0A3D3Y4M8	145.0	1.87e-40	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0009332_58	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0009332_58	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_60	UniRef90_UPI0008635DE9	343.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009332_60	697281.Mahau_2936	213.0	0	N/A	N/A
Pfam	UHGV-0009332_60	PF12686	N/A	N/A	N/A	DUF3800
KOfam	UHGV-0009332_62	K22300	71.7	1.3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0009332_62	phrog_8	67.8	2.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009332_62	UniRef90_UPI0008322FF6	98.6	3.33e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009332_62	428126.CLOSPI_00402	68.6	0.0000000000019	Represses a number of genes involved in the response to DNA damage (SOS response)	N/A
Pfam	UHGV-0009332_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0009332_62	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0009332_62	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_63	UniRef90_UPI001D0E690A	76.3	6.65e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009332_63	1163671.JAGI01000002_gene3923	48.5	0.00000101	N/A	N/A
structural_annotation	UHGV-0009332_63	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_68	phrog_4973	64.2	1.8e-18	N/A	unknown function
UniRef90	UHGV-0009332_68	UniRef90_A0A3D3Y5F2	150.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009332_68	584708.Apau_1668	58.2	0.000000000483	Helix-turn-helix domain	N/A
Pfam	UHGV-0009332_68	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0009332_68	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_71	phrog_14970	199.0	0	N/A	unknown function
UniRef90	UHGV-0009332_71	UniRef90_UPI00123F00F5	152.0	2.25049e-42	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0009332_71	397291.C804_03856	154.0	1.1911e-43	double-strand break repair protein	N/A
Pfam	UHGV-0009332_71	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0009332_71	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0009332_71	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_72	phrog_72	54.2	0.0000000000000025	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009332_72	UniRef90_UPI001F3F3E5C	162.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0009332_72	1507.HMPREF0262_00432	114.0	2.18e-29	N/A	N/A
structural_annotation	UHGV-0009332_72	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0009332_74	K03111	129.4	4.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009332_74	phrog_44	136.0	2.6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009332_74	UniRef90_R6LLA3	189.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009332_74	693746.OBV_12860	173.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0009332_74	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009332_74	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009332_74	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009332_74	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009332_74	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_75	phrog_2562	168.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009332_75	UniRef90_A0A3A6E2X3	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009332_75	1120998.AUFC01000030_gene2219	163.0	0	N/A	N/A
Pfam	UHGV-0009332_75	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0009332_75	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0009332_75	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0009332_76	phrog_9804	182.2	0	N/A	unknown function
UniRef90	UHGV-0009332_76	UniRef90_A0A3D1LDS2	292.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0009332_76	1121344.JHZO01000003_gene981	185.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0009332_76	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0009332_76	PF11417	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_77	UniRef90_A0A1C6GBI4	73.9	0.00000000000038	DNA polymerase III subunit beta	N/A
structural_annotation	UHGV-0009332_77	PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009332_78	UniRef90_A0A098GES5	98.2	1.08e-24	Putative phage associated protein	N/A
structural_annotation	UHGV-0009332_78	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009332_82	397290.C810_01103	77.4	0.0000000000000041	N/A	N/A