UHGV-0009402 (vOTU-033860)

Viral Genome: UHGV-0009402

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009402
vOTU ID	vOTU-033860
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_A_22_1120__NODE_2569_length_30231_cov_34.446342
Associated BioSample	SAMEA4765580
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.94 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.72
Jumbo phage	No

Genome content
Genome length (bp)	30,231
GC content	55.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	95%
Average CDS length (bps)	682.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009402_1	K01448	60.1	3.6e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0009402_1	phrog_435	79.7	5.7e-23	endolysin	lysis
UniRef90	UHGV-0009402_1	UniRef90_A0A3D5TEB1	246.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0009402_1	994573.T472_0211265	149.0	5.98e-40	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0009402_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0009402_1	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0009402_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0009402_1	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009402_2	PF09682	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009402_3	1203606.HMPREF1526_00254	78.6	1.42e-17	N/A	N/A
Pfam	UHGV-0009402_4	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0009402_4	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0009402_4	PF13306	N/A	N/A	N/A	N/A
KOfam	UHGV-0009402_5	K24213	46.8	0.00000000000028	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0009402_5	phrog_819	59.1	5.2e-17	tail protein	tail
eggNOG-mapper	UHGV-0009402_5	1519439.JPJG01000060_gene1892	142.0	1.99e-35	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0009402_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0009402_5	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0009402_6	UniRef90_UPI0006882B17	63.9	0.00000000312	C39 family peptidase	N/A
eggNOG-mapper	UHGV-0009402_6	509191.AEDB02000018_gene213	67.4	0.000000000112	Peptidase_C39 like family	N/A
structural_annotation	UHGV-0009402_6	PF05543,NF033920	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_7	phrog_4105	99.3	2.2e-29	N/A	unknown function
UniRef90	UHGV-0009402_7	UniRef90_A0A8D9UHA9	159.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0009402_7	411460.RUMTOR_01326	132.0	8.09e-39	N/A	N/A
structural_annotation	UHGV-0009402_10	PF21722	N/A	N/A	N/A	N/A
KOfam	UHGV-0009402_11	K16629	135.1	2.6e-40	COL21A; collagen type XXI alpha	N/A
PHROG	UHGV-0009402_11	phrog_819	142.3	0	tail protein	tail
eggNOG-mapper	UHGV-0009402_11	1121363.KB902204_gene1239	71.2	0.0000000000155	domain, Protein	N/A
Pfam	UHGV-0009402_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0009402_11	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0009402_12	PF21683	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009402_13	PF20377	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_14	phrog_6616	82.2	3.1e-26	tail protein	tail
eggNOG-mapper	UHGV-0009402_14	445972.ANACOL_01865	108.0	1.55e-21	N/A	N/A
structural_annotation	UHGV-0009402_14	PF07902,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_15	phrog_1194	71.3	1.2e-20	N/A	unknown function
UniRef90	UHGV-0009402_15	UniRef90_A0A8D9PDT1	118.0	9.44e-32	YolD-like protein	N/A
eggNOG-mapper	UHGV-0009402_15	742733.HMPREF9469_01808	86.7	5.12e-20	N/A	N/A
Pfam	UHGV-0009402_15	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0009402_15	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_16	phrog_1535	100.3	3.8e-40	tail length tape measure protein	tail
UniRef90	UHGV-0009402_16	UniRef90_A0A810PX76	150.0	1.61e-34	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0009402_16	693746.OBV_18190	197.0	0	domain protein	N/A
COG	UHGV-0009402_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009402_16	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_17	phrog_14275	44.1	0.000000000002	N/A	unknown function
Pfam	UHGV-0009402_17	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0009402_17	PF02883,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_18	phrog_706	131.0	7.3e-39	N/A	unknown function
UniRef90	UHGV-0009402_18	UniRef90_UPI000682A80B	231.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0009402_18	693746.OBV_18170	214.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0009402_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0009402_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_19	phrog_11299	73.5	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0009402_19	693746.OBV_18160	192.0	0	N/A	N/A
structural_annotation	UHGV-0009402_19	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_20	phrog_3099	95.6	5.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0009402_20	693746.OBV_18150	229.0	0	N/A	N/A
structural_annotation	UHGV-0009402_20	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_21	phrog_3266	51.1	0.000000000000018	tail completion	connector
UniRef90	UHGV-0009402_21	UniRef90_A0A2Z4QA01	111.0	7.37e-29	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0009402_21	1232443.BAIA02000078_gene24	191.0	0	N/A	N/A
structural_annotation	UHGV-0009402_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_22	phrog_556	64.8	6e-19	minor head protein	head and packaging
UniRef90	UHGV-0009402_22	UniRef90_A0A2U1BEM0	182.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0009402_22	1226322.HMPREF1545_00054	155.0	0	Minor capsid protein	N/A
Pfam	UHGV-0009402_22	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0009402_22	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_23	phrog_3366	87.7	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0009402_23	1226322.HMPREF1545_00053	148.0	5.1848e-44	N/A	N/A
Pfam	UHGV-0009402_23	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0009402_23	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_24	phrog_541	93.9	1.3e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0009402_24	642492.Clole_0822	65.1	0.0000000000128	N/A	N/A
PHROG	UHGV-0009402_25	phrog_29	180.1	0	major head protein	head and packaging
UniRef90	UHGV-0009402_25	UniRef90_UPI0004AE1FFD	432.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0009402_25	1232443.BAIA02000078_gene29	432.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0009402_25	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0009402_25	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_26	phrog_909	54.8	0.000000000000001	major head protein	head and packaging
eggNOG-mapper	UHGV-0009402_26	1536772.R70723_06665	60.1	0.00000000221	N/A	N/A
Pfam	UHGV-0009402_26	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-0009402_26	PF02924	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009402_27	UniRef90_UPI00189CE417	124.0	1.21e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0009402_27	1232443.BAIA02000078_gene31	128.0	3.64e-35	N/A	N/A
structural_annotation	UHGV-0009402_27	PF06810	N/A	N/A	N/A	N/A
KOfam	UHGV-0009402_29	K22300	51.3	0.000000000000026	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0009402_29	phrog_8	43.9	0.0000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009402_29	UniRef90_U2R0P8	175.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0009402_29	1226322.HMPREF1545_02890	175.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0009402_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0009402_29	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_30	phrog_581	299.4	0	minor head protein	head and packaging
UniRef90	UHGV-0009402_30	UniRef90_A0A1C5N7V1	544.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0009402_30	1226322.HMPREF1545_00046	354.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0009402_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0009402_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009402_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_31	phrog_8680	226.1	0	N/A	unknown function
UniRef90	UHGV-0009402_31	UniRef90_A0A3R6D7I3	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009402_31	411470.RUMGNA_02208	228.0	0	N/A	N/A
Pfam	UHGV-0009402_31	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0009402_31	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_33	phrog_533	313.8	0	portal protein	head and packaging
UniRef90	UHGV-0009402_33	UniRef90_UPI00189D71DB	557.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0009402_33	1232443.BAIA02000078_gene36	536.0	0	N/A	N/A
structural_annotation	UHGV-0009402_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0009402_34	K06909	130.5	1.8e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0009402_34	phrog_10250	170.5	0	N/A	unknown function
UniRef90	UHGV-0009402_34	UniRef90_A0A8J6MB41	592.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0009402_34	1232443.BAIA02000078_gene37	436.0	0	Terminase-like family	N/A
Pfam	UHGV-0009402_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0009402_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0009402_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009402_34	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0009402_35	phrog_606	77.9	1.3e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0009402_35	UniRef90_UPI00195648BB	174.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0009402_35	397290.C810_05185	140.0	2.19001e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-0009402_35	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0009402_35	PF16677	N/A	N/A	N/A	N/A
COG	UHGV-0009402_41	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0009402_41	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A