UHGV-0009528 (vOTU-140742)

Viral Genome: UHGV-0009528

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009528
vOTU ID	vOTU-140742
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_16_1621__NODE_9968_length_18219_cov_4.071988
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.9 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.85
Jumbo phage	No

Genome content
Genome length (bp)	18,219
GC content	37.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	97%
Average CDS length (bps)	682.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009528_1	K20478	63.8	3.9e-19	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0009528_1	phrog_1533	348.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0009528_1	UniRef90_A0A417QIC1	563.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0009528_1	1235793.C809_01928	525.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0009528_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0009528_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0009528_1	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0009528_1	PF10145,PF16454,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009528_3	1235792.C808_03058	50.8	0.00000481	N/A	N/A
structural_annotation	UHGV-0009528_3	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0009528_4	phrog_88	86.8	2.7e-25	major tail protein	tail
UniRef90	UHGV-0009528_4	UniRef90_A0A174CNN5	171.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0009528_4	1235792.C808_03059	153.0	4.52619e-43	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0009528_4	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0009528_4	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009528_4	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009528_5	1123075.AUDP01000020_gene1517	72.8	0.00000000000000755	N/A	N/A
structural_annotation	UHGV-0009528_5	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009528_6	411459.RUMOBE_00932	71.6	0.0000000000000449	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0009528_6	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0009528_6	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0009528_7	phrog_25	56.5	4.5e-16	head closure Hc1	connector
UniRef90	UHGV-0009528_7	UniRef90_A0A371ATA0	53.9	0.000000479	Head-tail adaptor protein	N/A
Pfam	UHGV-0009528_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0009528_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0009528_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009528_8	UniRef90_A0A6L5XWG5	73.6	0.00000000000000492	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0009528_8	796940.HMPREF9628_00142	76.6	4.68e-17	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0009528_8	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0009528_8	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0009528_9	phrog_10	230.7	0	major head protein	head and packaging
UniRef90	UHGV-0009528_9	UniRef90_A0A0F0C801	410.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0009528_9	397288.C806_00073	384.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0009528_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0009528_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0009528_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0009528_9	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0009528_10	K06904	94.7	1.3e-27	N/A	N/A
PHROG	UHGV-0009528_10	phrog_80	120.2	2.4e-35	head maturation protease	head and packaging
UniRef90	UHGV-0009528_10	UniRef90_A0A6L5XX25	162.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0009528_10	1414720.CBYM010000002_gene573	155.0	4.2039e-45	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0009528_10	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0009528_10	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0009528_10	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0009528_10	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009528_11	phrog_12	192.1	0	portal protein	head and packaging
UniRef90	UHGV-0009528_11	UniRef90_A0A161X249	362.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009528_11	1304866.K413DRAFT_1223	325.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0009528_11	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0009528_11	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0009528_11	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0009528_11	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0009528_12	K00571	159.6	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0009528_12	phrog_67	178.6	0	DNA methyltransferase	other
UniRef90	UHGV-0009528_12	UniRef90_A0A2C1C0D0	279.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0009528_12	1217656.F964_00563	234.0	0	DNA methylase	N/A
PADLOC	UHGV-0009528_12	MTase_II_00037	186.9	0	Type II methyltransferase	RM
Pfam	UHGV-0009528_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0009528_12	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0009528_13	phrog_9	254.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009528_13	UniRef90_A0A6L5XWP8	695.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0009528_13	1414720.CBYM010000002_gene575	662.0	0	Terminase	N/A
Pfam	UHGV-0009528_13	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0009528_13	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0009528_13	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0009528_13	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009528_14	UniRef90_A0A1C6JNN5	136.0	2.86e-37	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0009528_14	1414720.CBYM010000002_gene576	162.0	0	N/A	N/A
structural_annotation	UHGV-0009528_14	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0009528_15	K07451	47.9	0.00000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0009528_15	phrog_144	73.7	2.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009528_15	UniRef90_A0A371AT85	118.0	5.89e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0009528_15	1414720.CBYM010000001_gene694	115.0	1.36e-31	HNH nucleases	N/A
Pfam	UHGV-0009528_15	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-0009528_16	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0009528_20	phrog_824	112.6	1.9e-33	N/A	unknown function
UniRef90	UHGV-0009528_20	UniRef90_A0A3A9C013	168.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0009528_20	1232452.BAIB02000007_gene1645	96.7	3.22e-23	VRR_NUC	N/A
Pfam	UHGV-0009528_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0009528_23	K03111	110.2	3.2e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009528_23	phrog_44	110.0	2.6e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009528_23	UniRef90_R6KTY0	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009528_23	515620.EUBELI_01955	161.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0009528_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009528_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009528_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009528_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009528_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0009528_24	K03497	64.0	3.4e-18	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0009528_24	phrog_15982	89.8	3.6e-26	N/A	unknown function
UniRef90	UHGV-0009528_24	UniRef90_UPI0011596AA8	108.0	4.99e-22	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0009528_24	411463.EUBVEN_00458	115.0	2.18e-24	N/A	N/A
Pfam	UHGV-0009528_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0009528_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0009528_25	K03496	195.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0009528_25	phrog_164	166.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009528_25	UniRef90_A0A373MP32	157.0	7.28675e-44	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009528_25	1123511.KB905871_gene64	133.0	3.21e-35	Sporulation initiation inhibitor protein Soj	N/A
Pfam	UHGV-0009528_25	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0009528_25	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0009528_25	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A