UHGV-0009569 (vOTU-042554)

Viral Genome: UHGV-0009569

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009569
vOTU ID	vOTU-042554
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_B_5_1598__NODE_1254_length_40335_cov_8.853098
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.07
Jumbo phage	No

Genome content
Genome length (bp)	40,258
GC content	53.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	93%
Average CDS length (bps)	611.95
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0009569_2	phrog_263	83.8	1.2e-24	holin	lysis
UniRef90	UHGV-0009569_2	UniRef90_A0A329UCA4	110.0	3.27e-30	Phage holin	N/A
eggNOG-mapper	UHGV-0009569_2	411483.FAEPRAA2165_00003	104.0	1.51e-28	SPP1 phage holin	N/A
Pfam	UHGV-0009569_2	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0009569_2	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0009569_2	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_3	phrog_1863	75.8	3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0009569_3	748224.HMPREF9436_00408	105.0	5.48e-29	N/A	N/A
KOfam	UHGV-0009569_4	K07273	174.0	0	acm; lysozyme	N/A
PHROG	UHGV-0009569_4	phrog_291	139.2	3.50002e-41	endolysin	lysis
UniRef90	UHGV-0009569_4	UniRef90_UPI001D0EE7D8	308.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0009569_4	748224.HMPREF9436_00154	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0009569_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0009569_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0009569_4	PF01183,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009569_5	UniRef90_UPI0018C57687	515.0	0	BppU family phage baseplate upper protein	N/A
structural_annotation	UHGV-0009569_5	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_7	phrog_1067	190.8	0	minor head protein	head and packaging
UniRef90	UHGV-0009569_7	UniRef90_A0A2A7AM44	771.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_7	1123263.AUKY01000068_gene489	190.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0009569_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0009569_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0009569_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0009569_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_8	phrog_33	91.9	1.2e-26	distal tail protein Dit	tail
UniRef90	UHGV-0009569_8	UniRef90_A0A173Z1X4	146.0	6.20999e-40	Phage-related protein	N/A
eggNOG-mapper	UHGV-0009569_8	1123315.AUIP01000014_gene1961	99.0	1.85e-22	tail component	N/A
COG	UHGV-0009569_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0009569_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_9	phrog_9959	80.7	9.5e-24	tail length tape measure protein	tail
UniRef90	UHGV-0009569_9	UniRef90_A0A2A7B6K1	1399.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_9	1492737.FEM08_12070	146.0	6.32e-34	tape measure	N/A
Pfam	UHGV-0009569_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0009569_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0009569_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0009569_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_12	phrog_88	101.1	1.1e-29	major tail protein	tail
UniRef90	UHGV-0009569_12	UniRef90_UPI0018771F27	129.0	6.51e-34	phage tail protein	N/A
eggNOG-mapper	UHGV-0009569_12	349161.Dred_2600	65.9	0.000000000319	N/A	N/A
NCBIFam	UHGV-0009569_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0009569_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009569_13	UniRef90_A0A1C6FG30	130.0	1.47e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0009569_13	1235798.C817_04589	106.0	9.03e-27	N/A	N/A
structural_annotation	UHGV-0009569_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009569_14	999413.HMPREF1094_02005	73.9	0.0000000000000011	N/A	N/A
structural_annotation	UHGV-0009569_14	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_15	phrog_19734	89.9	2.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0009569_15	349161.Dred_2602	73.9	0.00000000000000322	N/A	N/A
structural_annotation	UHGV-0009569_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_16	phrog_749	53.6	0.0000000000000035	N/A	unknown function
UniRef90	UHGV-0009569_16	UniRef90_UPI0016630012	66.2	0.00000000000463	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0009569_16	349161.Dred_2603	90.5	2.18e-22	N/A	N/A
PHROG	UHGV-0009569_17	phrog_10	140.3	1.29998e-41	major head protein	head and packaging
UniRef90	UHGV-0009569_17	UniRef90_A0A2A7B712	926.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0009569_17	1235792.C808_00086	459.0	0	Phage capsid family	N/A
Pfam	UHGV-0009569_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0009569_17	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0009569_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0009569_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0009569_17	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_19	phrog_8680	220.2	0	N/A	unknown function
UniRef90	UHGV-0009569_19	UniRef90_A0A6N7TNE8	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009569_19	1423790.BN53_04265	189.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0009569_19	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0009569_19	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0009569_19	PF14386	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_20	K01358	94.3	1.8e-27	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0009569_20	phrog_133	132.2	4.2e-39	head maturation protease	head and packaging
UniRef90	UHGV-0009569_20	UniRef90_UPI001C10F40E	160.0	1.12104e-44	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0009569_20	1121866.AUGK01000006_gene879	142.0	8.31e-39	Clp protease	N/A
Pfam	UHGV-0009569_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0009569_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0009569_20	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_21	phrog_12	118.7	3.4e-35	portal protein	head and packaging
UniRef90	UHGV-0009569_21	UniRef90_A0A2A7B6S8	820.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009569_21	349161.Dred_2606	280.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0009569_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0009569_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0009569_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0009569_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_22	phrog_9	234.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009569_22	UniRef90_A0A2A7ALT4	1068.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0009569_22	1235792.C808_00083	628.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0009569_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0009569_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0009569_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_23	phrog_13845	59.0	6.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0009569_23	508419.F8J158_9CAUD	75.5	6.03e-16	N/A	N/A
structural_annotation	UHGV-0009569_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_24	phrog_119	62.1	7.8e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009569_24	UniRef90_A0A2A7B6I3	243.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_24	610130.Closa_0739	114.0	2.34e-31	HNH nucleases	N/A
Pfam	UHGV-0009569_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0009569_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0009569_25	phrog_111	161.5	0	DNA methyltransferase	other
UniRef90	UHGV-0009569_25	UniRef90_A0A174GVT8	170.0	0	Phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0009569_25	1567011.A0A0A7RUD1_9VIRU	163.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0009569_25	oMTase_00015	148.7	2.94273e-44	orphan methyltransferase	RM
Pfam	UHGV-0009569_25	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0009569_27	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_28	K03497	85.5	9e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0009569_28	phrog_4715	107.4	4.4e-32	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009569_28	UniRef90_A0A2A7AMC5	475.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_28	411471.SUBVAR_05842	174.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0009569_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0009569_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0009569_28	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_29	phrog_3136	98.6	4.1e-29	N/A	unknown function
UniRef90	UHGV-0009569_29	UniRef90_A0A6N7TMC2	124.0	2.57e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_29	97139.C824_00742	55.8	0.000000234	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0009569_29	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0009569_29	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_30	K03496	211.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0009569_30	phrog_164	151.0	8.40779e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009569_30	UniRef90_A0A2A7B6H3	496.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_30	411471.SUBVAR_05839	219.0	0	AAA domain	N/A
Pfam	UHGV-0009569_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0009569_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0009569_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_31	phrog_6969	58.8	7.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0009569_31	1232446.BAIE02000002_gene816	65.5	0.000000000923	N/A	N/A
Pfam	UHGV-0009569_31	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0009569_31	PF04182,MF_01819,TIGR04176,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_32	K03111	137.4	1.50001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009569_32	phrog_44	139.8	1.6e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009569_32	UniRef90_A0A2A7B6R5	301.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009569_32	748224.HMPREF9436_00638	206.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0009569_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009569_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009569_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009569_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009569_32	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_33	phrog_7566	80.9	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0009569_33	411471.SUBVAR_05830	104.0	9.13e-28	N/A	N/A
PHROG	UHGV-0009569_34	phrog_72	54.1	0.0000000000000027	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0009569_34	411471.SUBVAR_05829	145.0	9.90998e-42	N/A	N/A
structural_annotation	UHGV-0009569_34	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0009569_35	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0009569_35	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009569_43	UniRef90_UPI000BEF0F65	91.3	5.24e-23	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0009569_43	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_44	K22300	44.8	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0009569_44	phrog_8	44.9	0.0000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009569_44	UniRef90_UPI001E54DE4F	89.4	5.53e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_44	411460.RUMTOR_02056	56.6	0.0000000151	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0009569_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0009569_44	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0009569_44	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009569_46	PF06776,COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_47	K02342	84.6	1.1e-24	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0009569_47	phrog_192	100.9	1.1e-29	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009569_47	UniRef90_A0A1C6JSH3	77.4	0.00000000000287	DNA polymerase III polC-type	N/A
eggNOG-mapper	UHGV-0009569_47	665956.HMPREF1032_02791	129.0	1.32e-30	N/A	N/A
PADLOC	UHGV-0009569_47	cd06127	76.0	1.1e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0009569_47	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0009569_47	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0009569_47	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0009569_47	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
PHROG	UHGV-0009569_50	phrog_1373	40.8	0.000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009569_50	UniRef90_A0A2A7B6N3	320.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0009569_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0009569_50	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0009569_51	K14059	212.4	0	int; integrase	N/A
PHROG	UHGV-0009569_51	phrog_1	212.9	0	integrase	integration and excision
UniRef90	UHGV-0009569_51	UniRef90_A0A367GI93	250.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_51	1507.HMPREF0262_00307	182.0	0	Phage integrase family	N/A
Pfam	UHGV-0009569_51	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0009569_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009569_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0009569_51	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009569_52	1408437.JNJN01000043_gene801	94.4	3.25e-21	N/A	N/A
eggNOG-mapper	UHGV-0009569_53	1408437.JNJN01000043_gene802	120.0	9.09e-34	N/A	N/A
PHROG	UHGV-0009569_54	phrog_16490	105.9	4.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0009569_54	1408437.JNJN01000043_gene803	161.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0009569_58	phrog_374	64.2	7.8e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0009569_58	927704.SELR_12480	89.4	4.39e-16	N/A	N/A
UniRef90	UHGV-0009569_59	UniRef90_A0A1Q9JGI6	99.0	8.91e-24	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0009569_59	1033733.CAEK01000007_gene1628	104.0	8.63e-27	N/A	N/A
structural_annotation	UHGV-0009569_59	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009569_61	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A