UHGV-0009835 (vOTU-166762)

Viral Genome: UHGV-0009835

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009835
vOTU ID	vOTU-166762
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_14_1640__NODE_952_length_70185_cov_13.232998_1
Associated BioSample	SAMEA4765921
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9709
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.76
Jumbo phage	No

Genome content
Genome length (bp)	38,667
GC content	59.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	94%
Average CDS length (bps)	698.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009835_2	K07171	59.3	1e-16	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0009835_2	phrog_1936	60.2	3.8e-17	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009835_2	UniRef90_A0A1K1PL08	59.3	0.00000000792	mRNA interferase	N/A
Pfam	UHGV-0009835_2	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0009835_2	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0009835_2	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_3	phrog_18562	42.1	0.000000000019	N/A	unknown function
structural_annotation	UHGV-0009835_4	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_5	K07465	49.4	0.000000000000067	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0009835_5	phrog_69	328.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_5	UniRef90_A0A367GI90	656.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009835_5	1408437.JNJN01000081_gene1518	333.0	0	N/A	N/A
Pfam	UHGV-0009835_5	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0009835_5	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0009835_5	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_7	phrog_112	162.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_7	UniRef90_A0A367GK15	309.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009835_7	1408422.JHYF01000022_gene1393	151.0	4.80645e-43	N/A	N/A
Pfam	UHGV-0009835_7	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0009835_7	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_8	K02334	776.3	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0009835_8	phrog_17	365.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_8	UniRef90_A0A367GJN4	1185.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0009835_8	693746.OBV_43170	665.0	0	DNA polymerase	N/A
Pfam	UHGV-0009835_8	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0009835_8	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0009835_8	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009835_9	760568.Desku_0919	82.8	2.36e-16	N/A	N/A
PHROG	UHGV-0009835_12	phrog_2245	65.0	1.3e-18	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0009835_12	UniRef90_A0A1I0VIB3	58.2	0.00000000778	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
eggNOG-mapper	UHGV-0009835_12	658655.HMPREF0988_00885	49.7	0.00000229	N/A	N/A
structural_annotation	UHGV-0009835_12	PF02888,COG1694	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009835_13	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_15	phrog_256	943.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_15	UniRef90_A0A367GI49	1125.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0009835_15	1395587.P364_0122125	747.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0009835_15	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0009835_15	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0009835_15	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_16	phrog_93	52.1	0.0000000000000094	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_16	UniRef90_UPI0018F1F23F	162.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0009835_16	394503.Ccel_3056	93.6	1.78e-23	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0009835_16	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_17	K14440	124.3	4.3e-37	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0009835_17	phrog_62	380.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009835_17	UniRef90_A0A367GJS6	816.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0009835_17	1385512.N784_13490	474.0	0	SNF2 family	N/A
PADLOC	UHGV-0009835_17	ZorD1_00007	101.8	8.3e-30	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0009835_17	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0009835_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0009835_17	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0009835_17	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009835_19	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_20	phrog_8680	169.4	0	N/A	unknown function
UniRef90	UHGV-0009835_20	UniRef90_A0A3R6K733	144.0	2.11e-39	N/A	N/A
eggNOG-mapper	UHGV-0009835_20	1229517.AMFD01000023_gene1324	133.0	5.5e-36	N/A	N/A
Pfam	UHGV-0009835_20	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0009835_20	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009835_21	PF03496,MF_04142,NF041404	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_26	K00571	122.7	4.1e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0009835_26	phrog_498	447.3	0	DNA methyltransferase	other
UniRef90	UHGV-0009835_26	UniRef90_A0A367GIB5	820.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0009835_26	1423758.BN55_01455	425.0	0	DNA methylase	N/A
PADLOC	UHGV-0009835_26	MTase_II_00015	278.4	0	Type II methyltransferase	RM
Pfam	UHGV-0009835_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0009835_26	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0009835_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0009835_26	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_27	phrog_309	53.1	0.0000000000000025	terminase small subunit	head and packaging
UniRef90	UHGV-0009835_27	UniRef90_UPI001D05A70C	82.4	1.69e-17	transposase	N/A
eggNOG-mapper	UHGV-0009835_27	1200557.JHWV01000001_gene278	63.2	0.000000000143	transposase activity	N/A
COG	UHGV-0009835_27	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0009835_28	K06909	303.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0009835_28	phrog_3717	122.4	3.1e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0009835_28	UniRef90_A0A367GIK4	855.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0009835_28	665956.HMPREF1032_02957	402.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0009835_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0009835_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0009835_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0009835_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_29	phrog_533	274.5	0	portal protein	head and packaging
UniRef90	UHGV-0009835_29	UniRef90_A0A3E2XD02	607.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009835_29	642492.Clole_0815	249.0	0	N/A	N/A
Pfam	UHGV-0009835_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0009835_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_31	phrog_581	271.5	0	minor head protein	head and packaging
UniRef90	UHGV-0009835_31	UniRef90_UPI001C0164DE	329.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0009835_31	903814.ELI_3213	246.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0009835_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0009835_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009835_31	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_32	phrog_27009	44.1	0.0000000000017	N/A	unknown function
KOfam	UHGV-0009835_33	K05521	275.3	0	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	N/A
PHROG	UHGV-0009835_33	phrog_6572	143.4	7.00649e-45	ADP-ribosylglycohydrolase	other
UniRef90	UHGV-0009835_33	UniRef90_A0A367GJZ8	466.0	0	ADP-ribosyl-[dinitrogen reductase] hydrolase	N/A
eggNOG-mapper	UHGV-0009835_33	1007103.AFHW01000094_gene3200	189.0	0	ADP-ribosylglycohydrolase	N/A
Pfam	UHGV-0009835_33	PF03747	N/A	N/A	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
COG	UHGV-0009835_33	COG1397	N/A	N/A	ADP-ribosylglycohydrolase	N/A
structural_annotation	UHGV-0009835_33	PF03747,NF041672,COG1397	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_34	K00682	52.3	0.0000000000000077	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0009835_34	phrog_2520	110.8	9e-33	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009835_34	UniRef90_A0A367GJL1	310.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0009835_34	1235800.C819_03970	152.0	1.96182e-44	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-0009835_34	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0009835_34	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0009835_34	PF06094,COG2105	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_36	phrog_21141	42.3	0.0000000000097	N/A	unknown function
eggNOG-mapper	UHGV-0009835_36	1235790.C805_00863	75.1	0.0000000000000029	N/A	N/A
structural_annotation	UHGV-0009835_36	PF04232,MF_01122,NF003088	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_37	phrog_2443	217.7	0	amidoligase enzyme	other
UniRef90	UHGV-0009835_37	UniRef90_A0A174F0K6	296.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-0009835_37	665950.HMPREF1025_02711	296.0	0	Putative amidoligase enzyme	N/A
AcrCatalog	UHGV-0009835_37	cluster_58247	75.1	3.67e-17	NA	N/A
Pfam	UHGV-0009835_37	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0009835_37	PF12224	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009835_38	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_39	phrog_194	44.3	0.0000000000032	head scaffolding protein	head and packaging
structural_annotation	UHGV-0009835_39	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_40	phrog_247	198.0	0	major head protein	head and packaging
UniRef90	UHGV-0009835_40	UniRef90_UPI001C98E35A	147.0	5.83e-38	major capsid protein	N/A
eggNOG-mapper	UHGV-0009835_40	1120746.CCNL01000014_gene2097	143.0	2.93e-37	N/A	N/A
structural_annotation	UHGV-0009835_40	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_41	phrog_541	48.2	0.00000000000019	head-tail adaptor	connector
PHROG	UHGV-0009835_42	phrog_3366	48.6	8.3e-17	N/A	unknown function
Pfam	UHGV-0009835_42	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0009835_42	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_43	phrog_556	81.3	9.9e-24	minor head protein	head and packaging
UniRef90	UHGV-0009835_43	UniRef90_UPI001958E7C1	109.0	4.03e-28	minor capsid protein	N/A
eggNOG-mapper	UHGV-0009835_43	1120998.AUFC01000030_gene2239	81.6	3.78e-18	Minor capsid protein	N/A
Pfam	UHGV-0009835_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0009835_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_44	phrog_3266	80.5	1.7e-23	tail completion	connector
eggNOG-mapper	UHGV-0009835_44	663278.Ethha_0492	56.2	0.0000000439	N/A	N/A
structural_annotation	UHGV-0009835_44	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_45	phrog_3099	152.2	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0009835_45	411471.SUBVAR_06936	270.0	0	N/A	N/A
structural_annotation	UHGV-0009835_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_46	phrog_11299	93.4	1.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0009835_46	665956.HMPREF1032_03059	137.0	1.77e-39	N/A	N/A
structural_annotation	UHGV-0009835_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_47	phrog_706	93.0	3.1e-27	N/A	unknown function
UniRef90	UHGV-0009835_47	UniRef90_UPI0013141117	209.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0009835_47	665956.HMPREF1032_03058	227.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0009835_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0009835_47	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-0009835_48	K20361	42.8	0.000000000003	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-0009835_48	phrog_1535	230.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0009835_48	UniRef90_A0A173R880	162.0	6.52e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0009835_48	1235800.C819_00476	183.0	3.50325e-44	tape measure	N/A
COG	UHGV-0009835_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0009835_49	phrog_1194	97.5	9.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0009835_49	445972.ANACOL_01864	51.2	0.00000134	N/A	N/A
Pfam	UHGV-0009835_49	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0009835_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0009835_50	phrog_23052	291.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0009835_50	1408438.JADD01000040_gene811	252.0	0	N/A	N/A
structural_annotation	UHGV-0009835_50	PF09931,PF14879,NF033848,TIGR03721,COG3500	N/A	N/A	N/A	N/A