UHGV-0009975 (vOTU-027260)

Viral Genome: UHGV-0009975

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0009975
vOTU ID	vOTU-027260
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_18_1662__NODE_2444_length_40953_cov_11.718392_1
Associated BioSample	SAMEA4765942
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.94 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.963
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.3
Jumbo phage	No

Genome content
Genome length (bp)	35,142
GC content	41.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	90%
Average CDS length (bps)	584.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0009975_1	UniRef90_A0A416L9P5	87.4	2.56e-21	GGGtGRT protein (Fragment)	N/A
eggNOG-mapper	UHGV-0009975_1	1256908.HMPREF0373_01611	94.4	1.19e-22	Cytoplasmic, score 8.87	N/A
Pfam	UHGV-0009975_1	PF14057	N/A	N/A	GGGtGRT protein	GGGtGRT
KOfam	UHGV-0009975_2	K14059	234.5	0	int; integrase	N/A
PHROG	UHGV-0009975_2	phrog_1	223.6	0	integrase	integration and excision
UniRef90	UHGV-0009975_2	UniRef90_UPI001D087A79	778.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0009975_2	693746.OBV_03260	425.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0009975_2	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0009975_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0009975_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009975_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0009975_2	PF00589,PF13102,PF12286,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_3	phrog_32721	119.4	6.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0009975_3	1476973.JMMB01000007_gene2215	136.0	6.02e-37	N/A	N/A
UniRef90	UHGV-0009975_4	UniRef90_UPI0011DC726A	90.9	8.17e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009975_4	610130.Closa_1423	80.5	1.9e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0009975_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0009975_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0009975_5	K18830	78.0	1.5e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0009975_5	phrog_8	54.8	0.0000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009975_5	UniRef90_UPI00164CACBE	166.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009975_5	445972.ANACOL_03315	154.0	0	N/A	N/A
Pfam	UHGV-0009975_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0009975_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0009975_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_7	phrog_9576	70.7	1.9e-20	N/A	unknown function
UniRef90	UHGV-0009975_7	UniRef90_A0A1L7RUC4	72.4	0.0000000000000236	N/A	N/A
eggNOG-mapper	UHGV-0009975_7	435837.HMPREF0798_00821	75.1	3.66e-16	N/A	N/A
PHROG	UHGV-0009975_11	phrog_14088	52.8	0.0000000000000039	N/A	unknown function
UniRef90	UHGV-0009975_11	UniRef90_A0A3R6M7R7	57.8	0.00000000168	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0009975_11	1232453.BAIF02000057_gene1127	53.1	0.0000000191	N/A	N/A
PHROG	UHGV-0009975_12	phrog_1305	152.2	2.8026e-45	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009975_12	UniRef90_UPI001D092171	315.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009975_12	445974.CLORAM_02962	163.0	0	N/A	N/A
Pfam	UHGV-0009975_12	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0009975_12	PF06573	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_13	phrog_14088	46.8	0.00000000000034	N/A	unknown function
UniRef90	UHGV-0009975_15	UniRef90_UPI001D060E3A	157.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0009975_15	1029718.SFBM_0098	80.5	4.37e-19	Helix-turn-helix domain	N/A
Pfam	UHGV-0009975_15	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0009975_15	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0009975_15	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_17	phrog_15077	186.0	0	N/A	unknown function
UniRef90	UHGV-0009975_17	UniRef90_A0A1M6RQ18	252.0	0	RNA polymerase, alpha chain C terminal domain	N/A
eggNOG-mapper	UHGV-0009975_17	742765.HMPREF9457_02110	254.0	0	N/A	N/A
structural_annotation	UHGV-0009975_17	NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_19	phrog_22292	44.6	0.0000000000014	N/A	unknown function
PHROG	UHGV-0009975_20	phrog_23747	99.4	3e-29	N/A	unknown function
UniRef90	UHGV-0009975_20	UniRef90_A0A7Y9A9N6	91.7	3.38e-21	Magnesium-transporting ATPase (P-type)	N/A
structural_annotation	UHGV-0009975_20	NF040944	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_23	phrog_6499	149.6	7.00649e-45	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009975_23	UniRef90_UPI001D06B611	319.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0009975_23	1121342.AUCO01000012_gene1734	146.0	1.11964e-42	sequence-specific DNA binding	N/A
COG	UHGV-0009975_23	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0009975_23	PF06892,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0009975_24	K01356	50.0	0.000000000000062	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0009975_24	phrog_3502	49.2	0.0000000000001	N/A	unknown function
UniRef90	UHGV-0009975_24	UniRef90_A0A849CZS6	60.5	0.000000000346	LexA repressor	N/A
eggNOG-mapper	UHGV-0009975_24	431943.CKL_1579	58.5	0.00000000417	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0009975_24	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0009975_24	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0009975_25	phrog_398	184.1	0	N/A	unknown function
UniRef90	UHGV-0009975_25	UniRef90_UPI001D07CBBD	444.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0009975_25	33035.JPJF01000122_gene2462	201.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0009975_25	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0009975_25	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_26	phrog_864	235.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009975_26	UniRef90_UPI001D06D732	1166.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-0009975_26	478749.BRYFOR_09102	484.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0009975_26	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0009975_26	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0009975_26	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0009975_26	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0009975_26	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0009975_26	PF02257,PF05272,PF08706,MF_01407,NF011296,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-0009975_28	K03111	121.2	1.4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009975_28	phrog_44	120.6	1.4e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009975_28	UniRef90_UPI001D0765D9	273.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009975_28	658086.HMPREF0994_02045	183.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0009975_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009975_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009975_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009975_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009975_28	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_33	phrog_10865	174.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0009975_33	743719.PaelaDRAFT_2392	145.0	2.42e-39	N/A	N/A
Pfam	UHGV-0009975_33	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0009975_33	PF20505,NF001463	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009975_34	748449.Halha_2167	57.8	0.0000000967	N/A	N/A
PHROG	UHGV-0009975_35	phrog_119	63.7	2.6e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009975_35	UniRef90_UPI001D081DF5	253.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0009975_35	864178.E2ELN9_9CAUD	69.7	0.000000000000188	HNH endonuclease	N/A
Pfam	UHGV-0009975_35	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0009975_36	phrog_5110	106.9	9.5e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0009975_36	UniRef90_UPI001D0732BF	233.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0009975_36	349161.Dred_2608	108.0	3.55e-29	N/A	N/A
Pfam	UHGV-0009975_36	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0009975_36	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_37	phrog_9	236.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009975_37	UniRef90_UPI001D076CC1	1169.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0009975_37	610130.Closa_0741	771.0	0	Phage Terminase	N/A
Pfam	UHGV-0009975_37	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0009975_37	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0009975_37	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0009975_37	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_38	phrog_12	98.2	3.6e-29	portal protein	head and packaging
UniRef90	UHGV-0009975_38	UniRef90_UPI001D060193	757.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0009975_38	86416.Clopa_0339	187.0	0	Phage portal protein	N/A
Pfam	UHGV-0009975_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0009975_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0009975_38	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0009975_39	K01358	135.2	6.50001e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0009975_39	phrog_94	211.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0009975_39	UniRef90_UPI001D08E902	480.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0009975_39	1232452.BAIB02000007_gene1626	204.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0009975_39	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0009975_39	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0009975_39	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_40	phrog_10	90.2	2.7e-26	major head protein	head and packaging
UniRef90	UHGV-0009975_40	UniRef90_UPI001D0860FB	763.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0009975_40	1211817.CCAT010000053_gene2132	316.0	0	Phage capsid family	N/A
Pfam	UHGV-0009975_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0009975_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0009975_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0009975_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_41	phrog_749	56.5	4.2e-16	N/A	unknown function
UniRef90	UHGV-0009975_41	UniRef90_UPI0005B2A9D7	51.6	0.00000222	phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0009975_41	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_42	phrog_5635	56.9	4.1e-16	head-tail adaptor	connector
UniRef90	UHGV-0009975_42	UniRef90_UPI001D098732	238.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0009975_42	1347392.CCEZ01000045_gene13	54.3	0.000000079	N/A	N/A
Pfam	UHGV-0009975_42	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0009975_42	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0009975_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009975_43	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_44	phrog_5509	92.3	3.9e-27	neck protein	connector
eggNOG-mapper	UHGV-0009975_44	1450694.BTS2_0537	66.6	0.00000000000722	N/A	N/A
structural_annotation	UHGV-0009975_44	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009975_45	UniRef90_A0A374TPV8	133.0	5.06e-36	Phage tail protein	N/A
eggNOG-mapper	UHGV-0009975_45	1121866.AUGK01000006_gene884	122.0	1.59e-32	N/A	N/A
structural_annotation	UHGV-0009975_45	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009975_46	1384484.AEQU_1173	50.1	0.00000411	N/A	N/A
PHROG	UHGV-0009975_47	phrog_1272	278.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0009975_47	UniRef90_UPI001D06AE33	1235.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0009975_47	86416.Clopa_0349	223.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0009975_47	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0009975_47	COG1340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009975_47	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009975_48	658655.HMPREF0988_02551	157.0	8.96831e-44	N/A	N/A
structural_annotation	UHGV-0009975_48	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_49	phrog_538	144.7	6.09565e-43	minor tail protein	tail
UniRef90	UHGV-0009975_49	UniRef90_UPI001D07456C	635.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0009975_49	658655.HMPREF0988_02550	204.0	0	N/A	N/A
Pfam	UHGV-0009975_49	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0009975_49	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_50	phrog_9994	93.7	1.2e-27	N/A	unknown function
UniRef90	UHGV-0009975_50	UniRef90_UPI000C7605CE	60.5	0.000000482	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0009975_50	411468.CLOSCI_00275	78.6	0.0000000000000356	N/A	N/A
structural_annotation	UHGV-0009975_50	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0009975_51	phrog_19695	76.3	6.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0009975_51	1232452.BAIB02000007_gene1611	107.0	4.14e-29	N/A	N/A
structural_annotation	UHGV-0009975_51	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009975_52	411462.DORLON_00771	142.0	5.53e-33	N/A	N/A
eggNOG-mapper	UHGV-0009975_54	1235793.C809_03661	53.9	0.00000231	N/A	N/A