UHGV-0010180 (vOTU-025688)

Viral Genome: UHGV-0010180

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0010180
vOTU ID	vOTU-025688
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_14_1640__NODE_1125_length_63606_cov_18.698405_1
Associated BioSample	SAMEA4765921
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.47
Jumbo phage	No

Genome content
Genome length (bp)	34,153
GC content	43.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	95%
Average CDS length (bps)	788.12
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0010180_2	phrog_23452	230.0	0	N/A	unknown function
UniRef90	UHGV-0010180_2	UniRef90_A0A6N9LEQ0	402.0	0	Peptidoglycan-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-0010180_2	411459.RUMOBE_02836	395.0	0	N/A	N/A
Pfam	UHGV-0010180_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0010180_2	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
KOfam	UHGV-0010180_3	K07273	189.5	0	acm; lysozyme	N/A
PHROG	UHGV-0010180_3	phrog_6745	190.3	0	endolysin	lysis
UniRef90	UHGV-0010180_3	UniRef90_A0A1C5L8B5	737.0	0	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0010180_3	1121115.AXVN01000006_gene2170	405.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0010180_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0010180_3	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0010180_3	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_4	phrog_1129	87.4	7.7e-26	holin	lysis
UniRef90	UHGV-0010180_4	UniRef90_UPI00051B7422	152.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0010180_4	1121115.AXVN01000006_gene2171	161.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0010180_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0010180_4	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_5	phrog_4105	86.9	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0010180_5	411459.RUMOBE_00911	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010180_6	457412.RSAG_04673	55.1	0.0000000014	N/A	N/A
KOfam	UHGV-0010180_9	K00986	101.8	6.6e-30	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0010180_9	phrog_1423	186.6	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010180_9	UniRef90_A0A3C1LSM0	352.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0010180_9	1160721.RBI_I01568	224.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0010180_9	icity0040	93.5	3.6e-27	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0010180_9	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0010180_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
PHROG	UHGV-0010180_10	phrog_3206	44.1	0.0000000000024	Avd protein of DGR	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0010180_10	525254.HMPREF0072_1280	63.2	0.0000000000908	N/A	N/A
structural_annotation	UHGV-0010180_10	PF05635,MF_04067,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_11	phrog_16164	190.6	0	N/A	unknown function
UniRef90	UHGV-0010180_11	UniRef90_A0A413UF00	319.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010180_11	33035.JPJF01000093_gene2236	59.7	0.000000384	N/A	N/A
Pfam	UHGV-0010180_11	PF19789	N/A	N/A	N/A	DUF6273
UniRef90	UHGV-0010180_12	UniRef90_A0A564VXL8	279.0	0	Bacterial Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0010180_12	272562.CA_C0825	80.9	0.000000000000537	Cellulase (glycosyl hydrolase family 5)	N/A
Pfam	UHGV-0010180_12	PF00150	N/A	N/A	Cellulase (glycosyl hydrolase family 5)	Cellulase
COG	UHGV-0010180_12	COG2730	N/A	N/A	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	N/A
eggNOG-mapper	UHGV-0010180_13	742733.HMPREF9469_00973	174.0	0	N/A	N/A
PHROG	UHGV-0010180_15	phrog_6616	693.3	0	tail protein	tail
UniRef90	UHGV-0010180_15	UniRef90_A0A1C5RGI0	1109.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010180_15	476272.RUMHYD_01992	281.0	0	N/A	N/A
structural_annotation	UHGV-0010180_15	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_16	phrog_1194	68.2	9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0010180_16	33035.JPJF01000093_gene2242	169.0	0	N/A	N/A
structural_annotation	UHGV-0010180_16	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_17	phrog_1535	487.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0010180_17	UniRef90_A0A1C5RGR7	1207.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0010180_17	33035.JPJF01000093_gene2243	772.0	0	phage tail tape measure protein	N/A
COG	UHGV-0010180_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0010180_17	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_18	phrog_8355	95.5	1.9e-28	N/A	unknown function
UniRef90	UHGV-0010180_18	UniRef90_UPI001F2CFAB2	145.0	1.34525e-43	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0010180_18	33035.JPJF01000093_gene2244	85.9	4.8e-21	N/A	N/A
structural_annotation	UHGV-0010180_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_19	phrog_8300	91.0	8.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0010180_19	33035.JPJF01000093_gene2245	68.6	0.0000000000000913	N/A	N/A
structural_annotation	UHGV-0010180_19	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_20	phrog_820	112.4	2.2e-33	major tail protein	tail
eggNOG-mapper	UHGV-0010180_20	33035.JPJF01000093_gene2246	180.0	0	N/A	N/A
structural_annotation	UHGV-0010180_20	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_21	phrog_2595	84.5	9.2e-25	head-tail connector protein	connector
UniRef90	UHGV-0010180_21	UniRef90_UPI001C0EB705	209.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0010180_21	483218.BACPEC_01150	110.0	3.26e-29	N/A	N/A
Pfam	UHGV-0010180_21	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0010180_21	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_22	phrog_556	49.9	0.000000000000043	minor head protein	head and packaging
eggNOG-mapper	UHGV-0010180_22	742740.HMPREF9474_03509	171.0	0	N/A	N/A
PHROG	UHGV-0010180_23	phrog_8710	147.5	2.66247e-44	N/A	unknown function
eggNOG-mapper	UHGV-0010180_23	742740.HMPREF9474_03508	152.0	0	N/A	N/A
structural_annotation	UHGV-0010180_23	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_24	phrog_541	94.7	6.5e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0010180_24	1298920.KI911353_gene4848	205.0	0	N/A	N/A
PHROG	UHGV-0010180_25	phrog_15682	62.4	5.5e-18	N/A	unknown function
UniRef90	UHGV-0010180_25	UniRef90_J5WK97	61.6	0.000000000109	Rho termination factor, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0010180_25	469618.FVAG_01311	72.8	0.00000000000000149	N/A	N/A
PHROG	UHGV-0010180_26	phrog_212	291.5	0	major head protein	head and packaging
UniRef90	UHGV-0010180_26	UniRef90_A0A416Q289	584.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0010180_26	1294142.CINTURNW_1029	496.0	0	N/A	N/A
Pfam	UHGV-0010180_26	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0010180_26	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_27	phrog_194	164.8	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0010180_27	UniRef90_UPI001D02A5C9	284.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0010180_27	1262449.CP6013_3198	171.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0010180_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0010180_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_29	phrog_1048	172.9	0	N/A	unknown function
UniRef90	UHGV-0010180_29	UniRef90_A0A417PRP3	319.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010180_29	457412.RSAG_01107	294.0	0	N/A	N/A
Pfam	UHGV-0010180_29	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0010180_29	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0010180_29	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_30	phrog_581	228.2	0	minor head protein	head and packaging
UniRef90	UHGV-0010180_30	UniRef90_A0A414W2X3	579.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0010180_30	33035.JPJF01000093_gene2255	479.0	0	N/A	N/A
Pfam	UHGV-0010180_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0010180_30	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0010180_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_31	phrog_25639	123.5	4.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0010180_31	742740.HMPREF9474_03502	87.8	5.25e-22	N/A	N/A
PHROG	UHGV-0010180_32	phrog_533	270.9	0	portal protein	head and packaging
UniRef90	UHGV-0010180_32	UniRef90_UPI001C0F908C	834.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0010180_32	394503.Ccel_3296	523.0	0	N/A	N/A
structural_annotation	UHGV-0010180_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0010180_33	K06909	93.1	3.5e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0010180_33	phrog_10250	50.9	0.000000000000016	N/A	unknown function
UniRef90	UHGV-0010180_33	UniRef90_UPI0011DDB413	840.0	0	terminase	N/A
eggNOG-mapper	UHGV-0010180_33	742740.HMPREF9474_03500	672.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0010180_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0010180_33	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0010180_34	K07474	140.8	1.40004e-41	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0010180_34	phrog_51	154.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0010180_34	UniRef90_A0A415L5B5	291.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0010180_34	1298920.KI911353_gene4857	215.0	0	Terminase small subunit	N/A
Pfam	UHGV-0010180_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0010180_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0010180_34	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_35	phrog_36	75.5	6.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0010180_35	UniRef90_UPI001571211B	156.0	0	N/A	N/A
Pfam	UHGV-0010180_35	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0010180_35	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0010180_35	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0010180_37	phrog_19011	52.0	0.0000000000000079	N/A	unknown function
PHROG	UHGV-0010180_38	phrog_23707	79.8	3.3e-23	N/A	unknown function
UniRef90	UHGV-0010180_38	UniRef90_UPI00156E1A02	135.0	3.61e-40	alanine racemase	N/A
eggNOG-mapper	UHGV-0010180_38	552398.HMPREF0866_01624	55.5	0.0000000477	N/A	N/A
PHROG	UHGV-0010180_39	phrog_7566	101.6	3.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0010180_39	411459.RUMOBE_00948	182.0	0	N/A	N/A
KOfam	UHGV-0010180_41	K03497	72.1	9.4e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0010180_41	phrog_15077	198.5	0	N/A	unknown function
UniRef90	UHGV-0010180_41	UniRef90_A0A564VJH8	759.0	0	ParB-like nuclease domain protein	N/A
eggNOG-mapper	UHGV-0010180_41	742765.HMPREF9457_02110	149.0	2.91e-35	N/A	N/A
Pfam	UHGV-0010180_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0010180_41	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A