UHGV-0010499 (vOTU-072294)

Viral Genome: UHGV-0010499

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0010499
vOTU ID	vOTU-072294
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_3_RAJ1020YZ__NODE_1312_length_50804_cov_7.088750_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.62
Jumbo phage	No

Genome content
Genome length (bp)	44,318
GC content	38.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	91%
Average CDS length (bps)	735.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0010499_3	phrog_8781	80.2	2.6e-23	endolysin	lysis
UniRef90	UHGV-0010499_3	UniRef90_A0A351XAJ8	303.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010499_3	1572704.A0A0D3MVQ2_9CAUD	59.3	0.000000151	Bacterial SH3 domain	N/A
Pfam	UHGV-0010499_3	PF05257	N/A	N/A	CHAP domain	CHAP
structural_annotation	UHGV-0010499_3	PF20780,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_5	phrog_1863	59.5	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0010499_5	1226322.HMPREF1545_04027	59.7	0.0000000000843	N/A	N/A
KOfam	UHGV-0010499_8	K03988	56.1	5.7e-16	C1QG; complement C1q subcomponent subunit C	N/A
PHROG	UHGV-0010499_8	phrog_6320	62.9	3.8e-18	tail fiber protein	tail
Pfam	UHGV-0010499_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0010499_9	phrog_22978	362.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0010499_9	1410650.JHWL01000003_gene2814	386.0	0	N/A	N/A
Pfam	UHGV-0010499_9	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0010499_9	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0010499_9	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0010499_12	phrog_5555	70.1	2.5e-20	tail protein	tail
UniRef90	UHGV-0010499_12	UniRef90_R6J0A2	105.0	4.57e-20	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010499_12	1235793.C809_04663	72.4	0.000000000277	N/A	N/A
Pfam	UHGV-0010499_12	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0010499_13	phrog_511	209.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0010499_13	1321782.HMPREF1986_00351	254.0	0	N/A	N/A
structural_annotation	UHGV-0010499_13	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_14	phrog_12105	103.4	1.7e-30	N/A	unknown function
PHROG	UHGV-0010499_15	phrog_15239	81.8	5.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0010499_15	1449126.JQKL01000003_gene1694	57.0	0.00000000564	N/A	N/A
PHROG	UHGV-0010499_16	phrog_1357	228.2	0	major head protein	head and packaging
UniRef90	UHGV-0010499_16	UniRef90_A0A8D9UH64	390.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0010499_16	1449126.JQKL01000003_gene1695	350.0	0	N/A	N/A
NCBIFam	UHGV-0010499_16	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0010499_16	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_17	phrog_13908	209.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0010499_17	1410650.JHWL01000003_gene2831	97.8	1.03e-20	N/A	N/A
KOfam	UHGV-0010499_18	K07584	66.1	6.2e-19	N/A	N/A
PHROG	UHGV-0010499_18	phrog_4478	60.0	3e-17	peptidase	other
UniRef90	UHGV-0010499_18	UniRef90_A0A6A7K936	55.8	0.0000000977	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0010499_18	1128398.Curi_c19840	55.5	0.0000000241	Cysteine protease Prp	N/A
Pfam	UHGV-0010499_18	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0010499_18	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_19	phrog_156	283.0	0	portal protein	head and packaging
UniRef90	UHGV-0010499_19	UniRef90_A0A8D9UH10	422.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0010499_19	748224.HMPREF9436_01396	438.0	0	N/A	N/A
structural_annotation	UHGV-0010499_19	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_20	K06909	118.4	7.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0010499_20	phrog_979	125.9	2.5e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0010499_20	UniRef90_UPI0006875436	594.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0010499_20	1410650.JHWL01000003_gene2834	594.0	0	N/A	N/A
Pfam	UHGV-0010499_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0010499_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0010499_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010499_25	537007.BLAHAN_05460	52.8	0.0000000719	N/A	N/A
PHROG	UHGV-0010499_28	phrog_8684	84.1	1.7e-26	N/A	unknown function
UniRef90	UHGV-0010499_28	UniRef90_UPI000E48855B	107.0	2.22e-27	YopX family protein	N/A
eggNOG-mapper	UHGV-0010499_28	411473.RUMCAL_00280	73.6	0.00000000000000554	YopX protein	N/A
Pfam	UHGV-0010499_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0010499_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0010499_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_34	K00558	183.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0010499_34	phrog_116	197.7	0	DNA methyltransferase	other
UniRef90	UHGV-0010499_34	UniRef90_R9KEA8	354.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0010499_34	397290.C810_05213	354.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0010499_34	MTase_II_00058	209.1	0	Type II methyltransferase	RM
Pfam	UHGV-0010499_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0010499_34	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0010499_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0010499_34	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_36	phrog_824	132.8	1.3e-39	N/A	unknown function
UniRef90	UHGV-0010499_36	UniRef90_A0A1H8UNP5	148.0	5.32493e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0010499_36	397288.C806_00096	131.0	6.52e-38	VRR_NUC	N/A
Pfam	UHGV-0010499_36	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0010499_36	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_38	phrog_8489	234.4	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010499_38	UniRef90_A0A022N9G2	203.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-0010499_38	796945.HMPREF1145_1860	192.0	0	DnaD domain protein	N/A
COG	UHGV-0010499_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0010499_38	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_39	K05925	107.1	2.2e-31	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0010499_39	phrog_359	251.5	0	DNA methyltransferase	other
UniRef90	UHGV-0010499_39	UniRef90_A0A417HQJ2	285.0	0	Modification methylase MunI	N/A
eggNOG-mapper	UHGV-0010499_39	411468.CLOSCI_01467	263.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-0010499_39	MTase_II_00048	229.7	0	Type II methyltransferase	RM
Pfam	UHGV-0010499_39	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0010499_39	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0010499_39	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_40	K03111	125.5	6.8e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0010499_40	phrog_44	132.9	2.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010499_40	UniRef90_A0A1T4M5T3	217.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0010499_40	718252.FP2_06770	153.0	1.4013e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0010499_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0010499_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0010499_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0010499_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0010499_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_41	phrog_7566	66.6	3.1e-19	N/A	unknown function
UniRef90	UHGV-0010499_41	UniRef90_A0A3R6Y3R0	58.9	0.00000000449	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0010499_41	508419.F8J187_9CAUD	57.4	0.00000000267	N/A	N/A
PHROG	UHGV-0010499_42	phrog_72	67.0	3.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010499_42	UniRef90_UPI001F3F3E5C	112.0	4.17e-28	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0010499_42	1507.HMPREF0262_00432	94.0	8.36e-22	N/A	N/A
structural_annotation	UHGV-0010499_42	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_43	K06167	44.5	0.0000000000011	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0010499_43	phrog_392	130.1	2.2e-38	metal-dependent hydrolase	other
UniRef90	UHGV-0010499_43	UniRef90_A0A7X5KPZ7	275.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0010499_43	665956.HMPREF1032_03101	221.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0010499_43	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0010499_43	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0010499_43	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_44	phrog_2760	191.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010499_44	UniRef90_R7FH02	267.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0010499_44	1122173.AXVL01000067_gene1959	219.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0010499_44	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0010499_44	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0010499_44	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0010499_44	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0010499_45	phrog_674	194.3	0	N/A	unknown function
UniRef90	UHGV-0010499_45	UniRef90_A0A7X9AE52	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010499_45	1408437.JNJN01000039_gene373	228.0	0	N/A	N/A
Pfam	UHGV-0010499_45	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0010499_45	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_49	K22300	54.1	0.0000000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0010499_49	phrog_3	46.9	0.0000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0010499_49	UniRef90_UPI001B3C54CA	68.9	0.000000000000112	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0010499_49	864563.HMPREF9166_0598	60.5	0.0000000000348	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0010499_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010499_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0010499_50	phrog_2967	68.7	1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0010499_50	UniRef90_A0A413S085	82.0	3.04e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0010499_50	1235798.C817_00620	81.6	1.62e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0010499_50	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0010499_50	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0010499_50	PF08667,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_52	K22300	41.8	0.000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0010499_52	phrog_8	43.1	0.0000000000075	transcriptional regulator	transcription regulation
Pfam	UHGV-0010499_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010499_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0010499_53	K14059	186.5	0	int; integrase	N/A
PHROG	UHGV-0010499_53	phrog_1	186.6	0	integrase	integration and excision
UniRef90	UHGV-0010499_53	UniRef90_A0A174GHX2	154.0	6.56e-40	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0010499_53	1408437.JNJN01000054_gene2088	117.0	2.69e-28	DNA integration	N/A
Pfam	UHGV-0010499_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0010499_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0010499_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0010499_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0010499_54	K01206	201.9	0	FUCA; alpha-L-fucosidase [EC:3.2.1.51]	N/A
UniRef90	UHGV-0010499_54	UniRef90_UPI001C3B59D8	508.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-0010499_54	1195236.CTER_0187	422.0	0	F5 8 type C domain protein	N/A
Pfam	UHGV-0010499_54	PF01120	N/A	N/A	Alpha-L-fucosidase	Alpha_L_fucos
COG	UHGV-0010499_54	COG3669	N/A	N/A	Alpha-L-fucosidase	N/A