UHGV-0010725 (vOTU-016361)

Viral Genome: UHGV-0010725

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0010725
vOTU ID	vOTU-016361
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_16_1564__NODE_75_length_175504_cov_18.175543_1
Associated BioSample	SAMEA4765854
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.67 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.94
Jumbo phage	No

Genome content
Genome length (bp)	39,771
GC content	60.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	635.85
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0010725_1	UniRef90_A0A5K1IT34	75.1	0.00000000000000211	Helix-turn-helix domain protein	N/A
structural_annotation	UHGV-0010725_1	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_2	K01160	47.8	0.00000000000039	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0010725_2	phrog_140	76.7	3.4e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_2	UniRef90_UPI0011061354	298.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0010725_2	521003.COLINT_02312	94.7	9.69e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0010725_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0010725_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0010725_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_4	phrog_434	234.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_4	UniRef90_UPI00110603B3	666.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0010725_4	1504822.CCNO01000015_gene597	222.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0010725_4	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0010725_4	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0010725_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0010725_4	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_5	K07455	216.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0010725_5	phrog_148	201.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_5	UniRef90_UPI0014858083	557.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0010725_5	1504822.CCNO01000015_gene598	231.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0010725_5	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0010725_5	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0010725_5	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0010725_5	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_6	UniRef90_UPI0011067053	194.0	0	integration host factor	N/A
eggNOG-mapper	UHGV-0010725_6	1504822.CCNO01000015_gene823	99.4	8.47e-26	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	N/A
NCBIFam	UHGV-0010725_6	NF041260.1	N/A	N/A	integration host factor, actinobacterial type	N/A
COG	UHGV-0010725_6	COG0099	N/A	N/A	Ribosomal protein S13	N/A
structural_annotation	UHGV-0010725_6	PF00416,MF_01315,NF041260,COG0099	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_7	K03111	126.8	2.7e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0010725_7	phrog_44	126.1	2.7e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_7	UniRef90_UPI0011074123	304.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0010725_7	1034345.CAEM01000002_gene1212	189.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0010725_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0010725_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0010725_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0010725_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0010725_7	PF00436,MF_00984,NF005851,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_8	phrog_353	42.1	0.0000000000099	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0010725_8	UniRef90_UPI0011069D09	145.0	2.38221e-44	type II toxin-antitoxin system HicA family toxin	N/A
Pfam	UHGV-0010725_8	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0010725_8	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
KOfam	UHGV-0010725_11	K01520	166.8	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0010725_11	phrog_135	154.3	0	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_11	UniRef90_UPI001E3E2DB2	280.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0010725_11	397291.C804_00898	138.0	4.3e-40	dUTPase	N/A
Pfam	UHGV-0010725_11	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0010725_11	NF001862.0	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0010725_11	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0010725_11	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_12	phrog_236	40.2	0.000000000064	nucleotide kinase	other
UniRef90	UHGV-0010725_12	UniRef90_UPI001BB234D3	296.0	0	N/A	N/A
Pfam	UHGV-0010725_12	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0010725_13	phrog_8489	229.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_13	UniRef90_UPI001105FF6B	312.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0010725_13	1139219.I569_00860	159.0	9.80909e-45	DnaD domain protein	N/A
COG	UHGV-0010725_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0010725_13	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_14	K02315	125.6	5.1e-37	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0010725_14	phrog_50	105.2	7.6e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_14	UniRef90_UPI00110588D4	434.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0010725_14	1280694.AUJQ01000001_gene1885	129.0	5.79e-34	N/A	N/A
Pfam	UHGV-0010725_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0010725_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0010725_14	PF01695,PF06827,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010725_16	PF06530	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_19	K19779	44.1	0.0000000000037	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0010725_19	phrog_599	42.8	0.000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0010725_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0010725_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0010725_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-0010725_21	UniRef90_UPI001105C552	285.0	0	helix-turn-helix domain-containing protein	N/A
UniRef90	UHGV-0010725_24	UniRef90_UPI0011065E54	152.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0010725_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0010725_24	PF01381,NF010465,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0010725_25	K00558	119.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0010725_25	phrog_116	128.1	0	DNA methyltransferase	other
UniRef90	UHGV-0010725_25	UniRef90_A0A437UTY1	748.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0010725_25	1235793.C809_04341	344.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0010725_25	MTase_II_00164	85.4	5.4e-31	Type II methyltransferase	RM
Pfam	UHGV-0010725_25	PF13403	N/A	N/A	Hint domain	Hint_2
Pfam	UHGV-0010725_25	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0010725_25	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0010725_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0010725_26	K00558	59.7	3.7e-17	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0010725_26	phrog_26324	118.8	5.6e-35	DNA methyltransferase	other
UniRef90	UHGV-0010725_26	UniRef90_UPI001BB1FE8B	231.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0010725_26	742722.HMPREF9463_00216	181.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0010725_26	MTase_II_00058	52.0	0.000000000000019	Type II methyltransferase	RM
Pfam	UHGV-0010725_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0010725_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0010725_30	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_36	UniRef90_UPI001105F6E2	175.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0010725_36	717785.HYPMC_2169	49.7	0.00000216	sequence-specific DNA binding	N/A
Pfam	UHGV-0010725_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010725_36	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
eggNOG-mapper	UHGV-0010725_37	1232436.CAPF01000086_gene855	115.0	2.24e-30	N/A	N/A
KOfam	UHGV-0010725_38	K14060	149.7	2.10195e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0010725_38	phrog_125	168.4	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010725_38	UniRef90_UPI001BB21D57	384.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0010725_38	1280706.AUJE01000062_gene1532	181.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0010725_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0010725_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0010725_38	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_40	phrog_38	188.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0010725_40	UniRef90_UPI001106681D	1112.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0010725_40	1121866.AUGK01000003_gene1428	392.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0010725_40	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0010725_40	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010725_40	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_41	phrog_64	171.5	0	portal protein	head and packaging
UniRef90	UHGV-0010725_41	UniRef90_UPI0011063BFA	1023.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0010725_41	1121866.AUGK01000003_gene1429	354.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0010725_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0010725_41	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_42	UniRef90_UPI001C9809E0	86.7	7.92e-18	N/A	N/A
structural_annotation	UHGV-0010725_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_43	phrog_247	235.2	0	major head protein	head and packaging
UniRef90	UHGV-0010725_43	UniRef90_UPI001106BB9B	647.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0010725_43	1304866.K413DRAFT_3038	272.0	0	N/A	N/A
Pfam	UHGV-0010725_43	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0010725_43	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_44	UniRef90_UPI001107333C	221.0	0	DNA-packaging protein	N/A
structural_annotation	UHGV-0010725_44	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010725_46	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010725_47	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_48	UniRef90_UPI001106E87B	313.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0010725_48	1232453.BAIF02000058_gene1634	72.4	0.0000000000000414	N/A	N/A
structural_annotation	UHGV-0010725_48	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_49	UniRef90_UPI001106B496	252.0	0	N/A	N/A
Pfam	UHGV-0010725_49	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0010725_49	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_51	phrog_1535	169.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0010725_51	1121866.AUGK01000003_gene1437	211.0	0	phage tail tape measure protein	N/A
COG	UHGV-0010725_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0010725_52	phrog_1194	93.5	1.6e-27	N/A	unknown function
UniRef90	UHGV-0010725_52	UniRef90_A0A4U9RD70	66.2	0.000000000015	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0010725_52	1121866.AUGK01000003_gene1438	135.0	1.99e-39	N/A	N/A
Pfam	UHGV-0010725_52	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0010725_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_53	phrog_6616	421.0	0	tail protein	tail
UniRef90	UHGV-0010725_53	UniRef90_UPI00085BC306	300.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0010725_53	1121866.AUGK01000003_gene1439	325.0	0	Phage minor structural protein	N/A
COG	UHGV-0010725_53	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0010725_53	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010725_54	1121866.AUGK01000003_gene1445	93.2	9.45e-19	N/A	N/A
structural_annotation	UHGV-0010725_55	PF20942,MF_04116,NF041740,COG3291	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010725_56	UniRef90_UPI001106D0BD	227.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0010725_56	471855.Shel_15390	57.0	0.0000000138	Bacteriophage holin family	N/A
Pfam	UHGV-0010725_56	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0010725_56	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0010725_58	phrog_21825	160.0	0	endolysin	lysis
UniRef90	UHGV-0010725_58	UniRef90_UPI0011066B38	515.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0010725_58	702459.BBPR_0931	174.0	0	NLP P60 protein	N/A
Pfam	UHGV-0010725_58	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0010725_58	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0010725_58	PF00877,TIGR02594,COG3738	N/A	N/A	N/A	N/A