UHGV-0010956 (vOTU-121701)

Viral Genome: UHGV-0010956

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0010956
vOTU ID	vOTU-121701
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_C-REDO_B_9_1520__NODE_2488_length_22196_cov_7.288349
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.37
Jumbo phage	No

Genome content
Genome length (bp)	22,196
GC content	43.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	93%
Average CDS length (bps)	527.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0010956_2	K18830	68.6	1.2e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0010956_2	phrog_8	53.0	0.0000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0010956_2	UniRef90_A0A354I2Z2	162.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0010956_2	411470.RUMGNA_00191	125.0	1.3e-35	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0010956_2	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0010956_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0010956_2	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010956_4	UniRef90_A0A416N3A9	79.0	1.39e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0010956_4	97139.C824_00056	59.7	0.0000000000916	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0010956_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0010956_4	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_5	phrog_5765	44.9	0.000000000001	N/A	unknown function
UniRef90	UHGV-0010956_5	UniRef90_A0A414SEW2	65.1	0.000000000000639	BC1881 family protein	N/A
eggNOG-mapper	UHGV-0010956_5	1095750.HMPREF9970_1008	61.6	0.00000000000259	N/A	N/A
NCBIFam	UHGV-0010956_5	NF033495.1	N/A	N/A	BC1881 family protein	N/A
PHROG	UHGV-0010956_6	phrog_3292	63.9	2.6e-18	N/A	unknown function
UniRef90	UHGV-0010956_6	UniRef90_UPI0019599573	110.0	1.77e-30	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0010956_6	926692.AZYG01000059_gene89	77.0	5.82e-18	KTSC domain	N/A
Pfam	UHGV-0010956_6	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-0010956_6	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-0010956_6	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_9	phrog_4292	45.9	0.0000000000006	N/A	unknown function
KOfam	UHGV-0010956_11	K10906	85.8	3.9e-35	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0010956_11	phrog_412	260.3	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010956_11	UniRef90_A0A3D3U8P6	549.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010956_11	1122201.AUAZ01000055_gene153	146.0	1.11e-39	N/A	N/A
Pfam	UHGV-0010956_11	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-0010956_11	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_12	phrog_21613	95.8	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0010956_12	1120998.AUFC01000030_gene2214	175.0	0	N/A	N/A
KOfam	UHGV-0010956_13	K03111	88.8	1e-25	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0010956_13	phrog_44	101.7	8.9e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010956_13	UniRef90_A0A3D3U8Y9	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0010956_13	887325.HMPREF0381_0372	85.5	2.33e-19	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0010956_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0010956_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0010956_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0010956_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0010956_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_14	phrog_3490	127.4	8e-38	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010956_14	UniRef90_A0A3D3U9X5	307.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010956_14	861454.HMPREF9099_00350	120.0	1.82e-32	ERCC4 domain	N/A
Pfam	UHGV-0010956_14	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0010956_14	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0010956_15	K02316	73.6	2.9e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0010956_15	phrog_11992	177.6	0	N/A	unknown function
UniRef90	UHGV-0010956_15	UniRef90_A0A3D3U8V0	341.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0010956_15	411460.RUMTOR_02069	182.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0010956_15	drt-UG29	53.7	0.0000000000000022	DRT	DRT
Pfam	UHGV-0010956_15	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0010956_15	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0010956_15	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_16	phrog_8841	597.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010956_16	UniRef90_UPI001D0E7B86	798.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010956_16	476272.RUMHYD_01742	786.0	0	N/A	N/A
Pfam	UHGV-0010956_16	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0010956_16	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0010956_16	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010956_16	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010956_18	1235792.C808_00065	65.5	0.0000000000719	N/A	N/A
UniRef90	UHGV-0010956_20	UniRef90_A0A1C5TF07	116.0	1.25e-30	N/A	N/A
eggNOG-mapper	UHGV-0010956_20	742733.HMPREF9469_00921	84.7	1.58e-18	N/A	N/A
structural_annotation	UHGV-0010956_20	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_22	phrog_36	68.0	1.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0010956_22	UniRef90_A0A3D3U8Q6	240.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010956_22	1256908.HMPREF0373_00671	133.0	3.93e-38	N/A	N/A
structural_annotation	UHGV-0010956_22	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_23	phrog_10865	163.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0010956_23	1031288.AXAA01000022_gene1578	140.0	8.66e-37	N/A	N/A
Pfam	UHGV-0010956_23	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0010956_23	PF20505,NF001463	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010956_24	748449.Halha_2167	62.8	0.00000000105	N/A	N/A
structural_annotation	UHGV-0010956_24	PF15968	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_25	phrog_509	272.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0010956_25	UniRef90_A0A3D3U9Y4	425.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0010956_25	999413.HMPREF1094_00222	275.0	0	DNA packaging	N/A
Pfam	UHGV-0010956_25	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0010956_25	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0010956_25	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010956_25	PF10668,PF01920,NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0010956_26	K06909	67.8	1.2e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0010956_26	phrog_2	82.6	7.5e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0010956_26	UniRef90_A0A3D3U8V8	913.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0010956_26	411902.CLOBOL_00139	762.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0010956_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0010956_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0010956_26	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_27	phrog_533	380.5	0	portal protein	head and packaging
UniRef90	UHGV-0010956_27	UniRef90_A0A3D3U9V8	884.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0010956_27	411902.CLOBOL_00138	510.0	0	N/A	N/A
Pfam	UHGV-0010956_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0010956_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_28	phrog_581	300.2	0	minor head protein	head and packaging
UniRef90	UHGV-0010956_28	UniRef90_A0A3D3U8R6	740.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0010956_28	411461.DORFOR_01164	350.0	0	N/A	N/A
Pfam	UHGV-0010956_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0010956_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010956_28	PF06152,PF12636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010956_29	411460.RUMTOR_01296	75.5	1.14e-17	N/A	N/A
PHROG	UHGV-0010956_30	phrog_1048	100.1	3.1e-29	N/A	unknown function
UniRef90	UHGV-0010956_30	UniRef90_A0A396NPG3	137.0	1.21e-39	N/A	N/A
eggNOG-mapper	UHGV-0010956_30	457412.RSAG_01107	135.0	1.81e-39	N/A	N/A
Pfam	UHGV-0010956_30	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0010956_30	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0010956_30	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_31	phrog_194	91.2	1.3e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0010956_31	UniRef90_A0A1C5P0Y8	260.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0010956_31	411902.CLOBOL_00135	144.0	2.09004e-41	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0010956_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0010956_31	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_32	phrog_10	184.7	0	major head protein	head and packaging
UniRef90	UHGV-0010956_32	UniRef90_A0A3D3U8R7	749.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0010956_32	411902.CLOBOL_00134	557.0	0	Phage capsid family	N/A
Pfam	UHGV-0010956_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0010956_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0010956_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0010956_32	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_33	phrog_541	83.3	2.5e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0010956_33	411902.CLOBOL_00133	72.0	0.0000000000000203	N/A	N/A
PHROG	UHGV-0010956_34	phrog_3366	91.8	6.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0010956_34	742765.HMPREF9457_02129	52.0	0.00000154	N/A	N/A
Pfam	UHGV-0010956_34	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0010956_34	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_35	phrog_556	62.9	4.1e-18	minor head protein	head and packaging
UniRef90	UHGV-0010956_35	UniRef90_UPI000930E2B9	138.0	3.07e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0010956_35	411461.DORFOR_01170	116.0	2.79e-31	Minor capsid protein	N/A
Pfam	UHGV-0010956_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0010956_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_36	phrog_3266	109.8	1.5e-32	tail completion	connector
eggNOG-mapper	UHGV-0010956_36	663278.Ethha_0098	64.3	0.0000000000503	N/A	N/A
structural_annotation	UHGV-0010956_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_37	phrog_3099	118.4	5.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0010956_37	411902.CLOBOL_00129	154.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0010956_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_38	phrog_11299	104.9	7.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0010956_38	33035.JPJF01000106_gene3125	87.4	4.16e-20	N/A	N/A
structural_annotation	UHGV-0010956_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0010956_39	phrog_706	62.6	7.1e-18	N/A	unknown function
UniRef90	UHGV-0010956_39	UniRef90_A0A1C5M8I2	130.0	3.19e-36	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0010956_39	476272.RUMHYD_01784	85.9	1.69e-19	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0010956_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0010956_39	PF06854	N/A	N/A	N/A	N/A