UHGV-0011286 (vOTU-079660)

Viral Genome: UHGV-0011286

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0011286
vOTU ID	vOTU-079660
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_18_1662__NODE_967_length_70434_cov_19.768893_1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.77 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.33
Jumbo phage	No

Genome content
Genome length (bp)	39,824
GC content	38.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	88%
Average CDS length (bps)	626.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011286_1	K01185	117.3	1.7e-34	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0011286_1	phrog_7	162.4	0	endolysin	lysis
UniRef90	UHGV-0011286_1	UniRef90_A0A1Y4BF88	219.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0011286_1	397291.C804_01109	112.0	2.15e-26	Phage lysozyme	N/A
Pfam	UHGV-0011286_1	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
Pfam	UHGV-0011286_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0011286_1	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
HAMAP	UHGV-0011286_1	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0011286_1	PF08230,PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_2	phrog_199	46.9	0.00000000000029	holin	lysis
UniRef90	UHGV-0011286_2	UniRef90_UPI001ADDC159	211.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0011286_2	394503.Ccel_2943	52.8	0.000000636	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0011286_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
COG	UHGV-0011286_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0011286_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011286_3	PF03412,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_4	phrog_18444	93.2	1.3e-27	N/A	unknown function
UniRef90	UHGV-0011286_4	UniRef90_UPI00156E9A45	85.1	1.6e-20	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0011286_4	545243.BAEV01000153_gene380	47.8	0.00000188	N/A	N/A
PHROG	UHGV-0011286_5	phrog_6616	91.1	8.5e-27	tail protein	tail
UniRef90	UHGV-0011286_5	UniRef90_A0A415FLM5	196.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011286_5	33035.JPJF01000043_gene1002	166.0	9.80993e-41	N/A	N/A
eggNOG-mapper	UHGV-0011286_7	411459.RUMOBE_04220	91.3	1.41e-19	Histidine kinase	N/A
COG	UHGV-0011286_7	COG0642	N/A	N/A	Signal transduction histidine kinase	N/A
PHROG	UHGV-0011286_8	phrog_16267	115.0	1.12104e-44	N/A	unknown function
UniRef90	UHGV-0011286_8	UniRef90_UPI00073E79CE	656.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0011286_8	411459.RUMOBE_00923	655.0	0	N/A	N/A
COG	UHGV-0011286_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0011286_8	PF05113,PF02010,NF033848,NF011764,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_9	phrog_1401	59.1	6.9e-17	N/A	unknown function
UniRef90	UHGV-0011286_9	UniRef90_A0A7C6P910	73.9	0.000000000000016	N/A	N/A
eggNOG-mapper	UHGV-0011286_9	1232453.BAIF02000058_gene1640	78.6	3.17e-17	N/A	N/A
structural_annotation	UHGV-0011286_9	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_10	phrog_2566	73.2	2.5e-21	N/A	unknown function
PHROG	UHGV-0011286_11	phrog_1194	109.7	1.4e-32	N/A	unknown function
UniRef90	UHGV-0011286_11	UniRef90_A0A4U9RD70	74.3	0.00000000000000904	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0011286_11	1232453.BAIF02000058_gene1638	172.0	0	N/A	N/A
Pfam	UHGV-0011286_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0011286_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_12	phrog_1535	206.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0011286_12	UniRef90_A0A173WM72	657.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0011286_12	1304866.K413DRAFT_3046	205.0	0	N/A	N/A
COG	UHGV-0011286_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0011286_13	phrog_2066	84.0	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0011286_13	1123304.AQYA01000037_gene232	64.7	0.000000000008	N/A	N/A
PHROG	UHGV-0011286_14	phrog_183	46.6	0.00000000000039	tail chaperone protein	tail
UniRef90	UHGV-0011286_14	UniRef90_UPI0011DE12FE	144.0	1.41994e-41	N/A	N/A
eggNOG-mapper	UHGV-0011286_14	742733.HMPREF9469_01816	110.0	3.77e-29	N/A	N/A
structural_annotation	UHGV-0011286_14	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_15	phrog_158	64.4	2e-18	major tail protein	tail
UniRef90	UHGV-0011286_15	UniRef90_A0A416N3N0	187.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0011286_15	742733.HMPREF9469_01817	181.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0011286_15	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0011286_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_16	phrog_78	65.0	1.2e-18	tail terminator	connector
eggNOG-mapper	UHGV-0011286_16	1499683.CCFF01000014_gene3904	160.0	0	N/A	N/A
structural_annotation	UHGV-0011286_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_17	phrog_5	84.6	1.3e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0011286_17	UniRef90_UPI00189D840F	244.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0011286_17	742733.HMPREF9469_01819	179.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0011286_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0011286_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0011286_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_18	phrog_2168	65.1	2.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0011286_18	1280689.AUJC01000003_gene969	60.5	0.000000000822	N/A	N/A
structural_annotation	UHGV-0011286_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_19	phrog_132	82.5	3.6e-24	head-tail adaptor	connector
UniRef90	UHGV-0011286_19	UniRef90_A0A1G5F1K3	144.0	1.44053e-42	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0011286_19	742733.HMPREF9469_01821	131.0	2.23e-38	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0011286_19	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0011286_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_20	phrog_2724	48.0	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0011286_20	UniRef90_UPI001645E209	55.1	0.0000000576	Rho termination factor N-terminal domain-containing protein	N/A
Pfam	UHGV-0011286_20	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0011286_20	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_21	phrog_422	298.9	0	major head protein	head and packaging
UniRef90	UHGV-0011286_21	UniRef90_A0A2H4JCM6	503.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-0011286_21	742733.HMPREF9469_01823	520.0	0	N/A	N/A
structural_annotation	UHGV-0011286_21	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_22	phrog_172	144.0	9.79508e-43	head scaffolding protein	head and packaging
UniRef90	UHGV-0011286_22	UniRef90_A0A415FLT0	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011286_22	742733.HMPREF9469_01824	194.0	0	N/A	N/A
Pfam	UHGV-0011286_22	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0011286_22	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_23	phrog_478	129.2	1.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0011286_23	UniRef90_A0A285PT53	239.0	0	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0011286_23	1235792.C808_00058	191.0	0	N/A	N/A
PHROG	UHGV-0011286_24	phrog_872	76.3	4.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0011286_24	397290.C810_05225	108.0	1.38e-28	N/A	N/A
dbAPIS	UHGV-0011286_24	APIS052	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011286_26	411470.RUMGNA_02214	71.2	0.00000000000000508	N/A	N/A
structural_annotation	UHGV-0011286_26	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_27	phrog_1865	60.8	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0011286_27	1391647.AVSV01000003_gene1805	52.8	0.0000000239	N/A	N/A
structural_annotation	UHGV-0011286_27	PF07073,MF_00436,TIGR02383,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_28	phrog_2841	335.4	0	minor head protein	head and packaging
UniRef90	UHGV-0011286_28	UniRef90_A0A564VY65	715.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0011286_28	1123304.AQYA01000037_gene216	368.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0011286_28	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0011286_28	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
NCBIFam	UHGV-0011286_28	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0011286_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011286_28	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_29	phrog_64	385.6	0	portal protein	head and packaging
UniRef90	UHGV-0011286_29	UniRef90_A0A416N3J2	725.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0011286_29	742733.HMPREF9469_01826	590.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0011286_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0011286_29	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0011286_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0011286_30	K06909	132.5	3.8e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0011286_30	phrog_10250	216.8	0	N/A	unknown function
UniRef90	UHGV-0011286_30	UniRef90_A0A416N3M1	741.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0011286_30	903814.ELI_3215	633.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0011286_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0011286_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0011286_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0011286_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_31	phrog_509	290.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0011286_31	UniRef90_A0A415UCQ6	459.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0011286_31	552396.HMPREF0863_04210	251.0	0	DNA packaging	N/A
Pfam	UHGV-0011286_31	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0011286_31	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0011286_31	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011286_31	PF10668,PF01920,NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_32	phrog_36	64.9	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011286_32	UniRef90_R6ZAS5	120.0	1.2e-31	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0011286_32	411490.ANACAC_00789	140.0	4.38e-40	N/A	N/A
PHROG	UHGV-0011286_36	phrog_8538	100.0	1.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0011286_36	1121121.KB894312_gene3170	75.5	0.00000000000000161	N/A	N/A
PHROG	UHGV-0011286_38	phrog_7566	118.2	2.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0011286_38	97139.C824_00037	102.0	7.53e-27	N/A	N/A
PHROG	UHGV-0011286_39	phrog_15077	104.5	1.8e-30	N/A	unknown function
UniRef90	UHGV-0011286_39	UniRef90_A5ZPN2	160.0	1.29998e-41	N/A	N/A
eggNOG-mapper	UHGV-0011286_39	97139.C824_00038	228.0	0	N/A	N/A
structural_annotation	UHGV-0011286_39	NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_40	phrog_8470	229.3	0	N/A	unknown function
UniRef90	UHGV-0011286_40	UniRef90_UPI001C10724F	1172.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0011286_40	999413.HMPREF1094_04705	511.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0011286_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0011286_40	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011286_41	1235792.C808_00065	215.0	0	N/A	N/A
KOfam	UHGV-0011286_42	K03469	57.8	2.2e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0011286_42	phrog_531	56.3	5.8e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011286_42	UniRef90_A0A174KC84	259.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0011286_42	411461.DORFOR_01140	115.0	6.33e-31	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0011286_42	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0011286_42	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0011286_42	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0011286_43	phrog_3584	156.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0011286_43	97139.C824_06117	255.0	0	N/A	N/A
structural_annotation	UHGV-0011286_43	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011286_45	UniRef90_A0A415G6W5	186.0	0	Winged helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0011286_45	PF20063	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011286_51	UniRef90_UPI0004654DF5	93.2	1.41e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0011286_51	742765.HMPREF9457_02095	82.0	6.76e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0011286_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0011286_51	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0011286_52	K22300	65.4	1.1e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0011286_52	phrog_3	54.9	0.000000000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-0011286_52	UniRef90_A0A3C1J235	156.0	1.4013e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0011286_52	1121289.JHVL01000079_gene1186	86.3	5.53e-19	sequence-specific DNA binding	N/A
PADLOC	UHGV-0011286_52	retron_type_VI_hth_cluster2_1	40.2	0.000000000049	N/A	Retron
Pfam	UHGV-0011286_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011286_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0011286_52	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0011286_53	K06218	66.1	1.1e-18	relE, stbE; mRNA interferase RelE/StbE	N/A
PHROG	UHGV-0011286_53	phrog_1213	60.4	3.4e-17	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0011286_53	UniRef90_A0A174FGC3	142.0	5.24086e-43	Type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-0011286_53	411469.EUBHAL_01995	142.0	8.82818e-44	Addiction module toxin, RelE StbE family	N/A
Pfam	UHGV-0011286_53	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
COG	UHGV-0011286_53	COG2026	N/A	N/A	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	N/A
structural_annotation	UHGV-0011286_53	PF05016,TIGR00053,COG2026	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011286_54	UniRef90_UPI001D002C2A	63.9	0.0000000000313	N/A	N/A
eggNOG-mapper	UHGV-0011286_54	411469.EUBHAL_01996	147.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0011286_55	phrog_87	77.1	1.7e-22	metallo-protease	other
UniRef90	UHGV-0011286_55	UniRef90_UPI001D07A9BA	191.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0011286_55	457412.RSAG_00798	193.0	0	Zn peptidase	N/A
COG	UHGV-0011286_55	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0011286_55	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0011286_56	K14059	166.5	0	int; integrase	N/A
PHROG	UHGV-0011286_56	phrog_1	179.6	0	integrase	integration and excision
UniRef90	UHGV-0011286_56	UniRef90_A0A415G6Y0	486.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0011286_56	1280698.AUJS01000007_gene999	251.0	0	Phage integrase family	N/A
Pfam	UHGV-0011286_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011286_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0011286_56	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A