UHGV-0011519 (vOTU-065502)

Viral Genome: UHGV-0011519

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0011519
vOTU ID	vOTU-065502
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_20_1653__NODE_488_length_92465_cov_66.649651_1
Associated BioSample	SAMEA4765934
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.36
Jumbo phage	No

Genome content
Genome length (bp)	38,499
GC content	41.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	91%
Average CDS length (bps)	562.11
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011519_1	K22300	47.0	0.00000000000058	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0011519_1	phrog_8	77.6	2.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011519_1	UniRef90_B0G4K1	94.0	7.18e-24	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0011519_1	411461.DORFOR_01188	94.0	1.2e-24	transcriptional regulator, XRE family	N/A
Pfam	UHGV-0011519_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011519_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0011519_1	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_2	phrog_14030	162.5	0	N/A	unknown function
UniRef90	UHGV-0011519_2	UniRef90_A0A1C5M3C8	222.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0011519_2	411461.DORFOR_00720	516.0	0	N/A	N/A
structural_annotation	UHGV-0011519_2	PF18342,NF041850,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_3	phrog_199	79.4	3.6e-23	holin	lysis
UniRef90	UHGV-0011519_3	UniRef90_B0G4J9	300.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0011519_3	411461.DORFOR_01186	300.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0011519_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0011519_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0011519_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0011519_4	476272.RUMHYD_00002	113.0	3.38e-23	N/A	N/A
eggNOG-mapper	UHGV-0011519_6	1280698.AUJS01000007_gene1053	111.0	9.26e-32	N/A	N/A
PHROG	UHGV-0011519_7	phrog_12931	101.7	2.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0011519_7	742765.HMPREF9457_03370	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011519_8	411461.DORFOR_01178	137.0	8.35e-39	N/A	N/A
PHROG	UHGV-0011519_9	phrog_13141	159.1	0	N/A	unknown function
UniRef90	UHGV-0011519_9	UniRef90_UPI00156D68EE	256.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0011519_9	411461.DORFOR_01178	320.0	0	N/A	N/A
structural_annotation	UHGV-0011519_9	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_10	phrog_538	223.8	0	minor tail protein	tail
UniRef90	UHGV-0011519_10	UniRef90_UPI001E2C8064	340.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0011519_10	411461.DORFOR_01177	426.0	0	N/A	N/A
Pfam	UHGV-0011519_10	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0011519_10	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011519_11	UniRef90_A0A415MTE8	559.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0011519_11	411461.DORFOR_01176	259.0	0	N/A	N/A
structural_annotation	UHGV-0011519_11	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_12	phrog_13339	400.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0011519_12	UniRef90_A0A415MTD4	1463.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0011519_12	1336234.JAGN01000004_gene517	306.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0011519_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0011519_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0011519_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0011519_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011519_15	UniRef90_UPI00040253E3	193.0	0	SAP domain-containing protein	N/A
Pfam	UHGV-0011519_15	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-0011519_15	PF21169	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011519_16	UniRef90_UPI00156FB996	270.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0011519_16	1384484.AEQU_1175	143.0	1.32e-40	N/A	N/A
structural_annotation	UHGV-0011519_16	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_17	phrog_5509	89.8	2.5e-26	neck protein	connector
UniRef90	UHGV-0011519_17	UniRef90_W0FMR6	114.0	4.85e-30	Gp9 protein	N/A
eggNOG-mapper	UHGV-0011519_17	1220589.CD32_01700	51.6	0.00000217	N/A	N/A
structural_annotation	UHGV-0011519_17	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011519_18	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_19	phrog_5635	47.8	0.00000000000026	head-tail adaptor	connector
eggNOG-mapper	UHGV-0011519_19	1384484.AEQU_1178	55.5	0.00000003	N/A	N/A
NCBIFam	UHGV-0011519_19	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0011519_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_21	phrog_10	103.9	1.3e-30	major head protein	head and packaging
UniRef90	UHGV-0011519_21	UniRef90_A0A415MTA6	777.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0011519_21	1384484.AEQU_1180	318.0	0	Phage capsid family	N/A
Pfam	UHGV-0011519_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0011519_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0011519_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0011519_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0011519_22	K01358	96.9	2.9e-28	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0011519_22	phrog_94	183.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0011519_22	UniRef90_A0A415MTD8	482.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0011519_22	1235792.C808_00085	196.0	0	Clp protease	N/A
Pfam	UHGV-0011519_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0011519_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0011519_22	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_23	phrog_12	92.0	4.5e-27	portal protein	head and packaging
UniRef90	UHGV-0011519_23	UniRef90_A0A415MTC5	729.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0011519_23	349161.Dred_2606	198.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0011519_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0011519_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0011519_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_24	phrog_9	271.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0011519_24	UniRef90_A0A415MTC4	1120.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0011519_24	1211817.CCAT010000053_gene2129	593.0	0	Phage Terminase	N/A
Pfam	UHGV-0011519_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0011519_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0011519_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0011519_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_25	phrog_5110	100.9	7.3e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0011519_25	UniRef90_UPI00156D89BA	152.0	1.4013e-45	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0011519_25	610130.Closa_0740	112.0	1.14e-30	N/A	N/A
Pfam	UHGV-0011519_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0011519_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_27	phrog_119	73.6	2.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011519_27	UniRef90_A0A415MTD9	234.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0011519_27	768710.DesyoDRAFT_1275	107.0	1.86e-28	HNH nucleases	N/A
Pfam	UHGV-0011519_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0011519_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0011519_28	phrog_11237	105.4	4.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0011519_28	411461.DORFOR_01161	260.0	0	N/A	N/A
KOfam	UHGV-0011519_29	K04763	169.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0011519_29	phrog_1	147.2	1.30321e-43	integrase	integration and excision
UniRef90	UHGV-0011519_29	UniRef90_B0G4H3	669.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0011519_29	411461.DORFOR_01160	669.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0011519_29	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0011519_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011519_29	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0011519_29	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_31	phrog_8684	100.3	1.9e-30	N/A	unknown function
UniRef90	UHGV-0011519_31	UniRef90_UPI000677CD2A	311.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0011519_31	457412.RSAG_01162	179.0	0	YopX protein	N/A
Pfam	UHGV-0011519_31	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0011519_31	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0011519_31	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011519_34	411461.DORFOR_01156	296.0	0	N/A	N/A
PHROG	UHGV-0011519_35	phrog_15198	49.0	0.000000000000073	N/A	unknown function
UniRef90	UHGV-0011519_35	UniRef90_A0A893WE10	153.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011519_35	411461.DORFOR_01155	111.0	1.19e-30	N/A	N/A
Pfam	UHGV-0011519_35	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0011519_35	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_36	phrog_15198	49.7	0.000000000000054	N/A	unknown function
UniRef90	UHGV-0011519_36	UniRef90_A0A8B3AJ13	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011519_36	1256908.HMPREF0373_00667	103.0	5.28e-27	N/A	N/A
Pfam	UHGV-0011519_36	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0011519_39	phrog_26445	41.1	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0011519_39	UniRef90_A0A8B3AJ48	100.0	1.3e-24	AsnC family protein	N/A
eggNOG-mapper	UHGV-0011519_39	97139.C824_05982	50.4	0.00000354	N/A	N/A
structural_annotation	UHGV-0011519_39	PF00196,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_40	phrog_38110	123.2	5.7e-37	N/A	unknown function
PHROG	UHGV-0011519_41	phrog_31991	180.7	0	N/A	unknown function
PHROG	UHGV-0011519_42	phrog_24386	111.0	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0011519_42	411461.DORFOR_01147	217.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0011519_42	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0011519_42	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_43	phrog_7566	78.9	3.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0011519_43	411461.DORFOR_01145	116.0	3.45e-31	N/A	N/A
PHROG	UHGV-0011519_44	phrog_15077	135.1	1e-39	N/A	unknown function
UniRef90	UHGV-0011519_44	UniRef90_A0A7M3SA13	129.0	2.05e-29	N/A	N/A
eggNOG-mapper	UHGV-0011519_44	1280698.AUJS01000007_gene1019	154.0	1.61e-39	N/A	N/A
structural_annotation	UHGV-0011519_44	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_45	phrog_8470	282.8	0	N/A	unknown function
UniRef90	UHGV-0011519_45	UniRef90_UPI001D0719D3	1216.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0011519_45	411467.BACCAP_03445	203.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0011519_45	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0011519_45	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011519_46	UniRef90_UPI001D081332	290.0	0	PcfK-like family protein	N/A
eggNOG-mapper	UHGV-0011519_46	1235793.C809_01906	91.7	2.19e-21	N/A	N/A
Pfam	UHGV-0011519_46	PF14058	N/A	N/A	PcfK-like protein	PcfK
KOfam	UHGV-0011519_47	K03469	40.8	0.000000000037	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0011519_47	phrog_531	50.7	0.000000000000035	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011519_47	UniRef90_A0A1M6MV17	134.0	7.56e-38	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0011519_47	411461.DORFOR_01140	270.0	0	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0011519_47	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0011519_47	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_49	phrog_3584	165.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0011519_49	1280698.AUJS01000007_gene1013	408.0	0	N/A	N/A
structural_annotation	UHGV-0011519_49	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0011519_52	phrog_36464	44.4	0.0000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0011519_52	411461.DORFOR_01136	76.6	1.33e-17	N/A	N/A
structural_annotation	UHGV-0011519_52	PF09035	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011519_54	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011519_59	411468.CLOSCI_00322	46.6	0.00000392	N/A	N/A
KOfam	UHGV-0011519_60	K18830	71.9	1.2e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0011519_60	phrog_2967	55.5	0.000000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011519_60	UniRef90_UPI0004A3E791	154.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0011519_60	445972.ANACOL_03315	134.0	3.19e-39	N/A	N/A
Pfam	UHGV-0011519_60	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0011519_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0011519_60	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0011519_61	PF08797	N/A	N/A	HIRAN domain	HIRAN
KOfam	UHGV-0011519_62	K14059	178.5	0	int; integrase	N/A
PHROG	UHGV-0011519_62	phrog_1	159.9	0	integrase	integration and excision
UniRef90	UHGV-0011519_62	UniRef90_B0G4D9	702.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0011519_62	411461.DORFOR_01126	702.0	0	Phage integrase family	N/A
Pfam	UHGV-0011519_62	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0011519_62	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011519_62	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0011519_62	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A