UHGV-0011689 (vOTU-010273)

Viral Genome: UHGV-0011689

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0011689
vOTU ID	vOTU-010273
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_1_RAJ0018YZ__NODE_1945_length_56806_cov_25.312873_1
Associated BioSample	SAMEA4969159
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9761
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.62
Jumbo phage	No

Genome content
Genome length (bp)	42,333
GC content	38.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	664.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011689_1	K14059	101.0	1.9e-29	int; integrase	N/A
PHROG	UHGV-0011689_1	phrog_1	131.3	9.1e-39	integrase	integration and excision
UniRef90	UHGV-0011689_1	UniRef90_UPI001EE781EB	528.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0011689_1	1504823.CCMM01000008_gene1083	441.0	0	DNA integration	N/A
Pfam	UHGV-0011689_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0011689_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011689_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0011689_1	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011689_2	UniRef90_A0A3C1N2P3	65.1	0.00000000000737	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0011689_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
UniRef90	UHGV-0011689_4	UniRef90_A0A417IKZ6	91.7	1.57e-22	DNA-binding protein	N/A
structural_annotation	UHGV-0011689_4	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_5	phrog_69	53.7	0.0000000000000037	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_5	UniRef90_A0A645E2H1	179.0	0	PDDEXK_1 domain-containing protein	N/A
Pfam	UHGV-0011689_5	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0011689_5	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0011689_5	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_6	phrog_124	136.5	1.90001e-40	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_6	UniRef90_A0A7X2IW81	200.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0011689_6	1227360.C176_12573	195.0	0	AAA domain	N/A
Pfam	UHGV-0011689_6	PF13479	N/A	N/A	AAA domain	AAA_24
NCBIFam	UHGV-0011689_6	TIGR01618.1	N/A	N/A	phage nucleotide-binding protein	N/A
structural_annotation	UHGV-0011689_6	PF13479,MF_00350,TIGR01618,COG1066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011689_7	1539298.JO41_12690	57.4	0.0000000657	N/A	N/A
Pfam	UHGV-0011689_7	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0011689_7	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0011689_8	K19789	254.3	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0011689_8	phrog_16	219.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_8	UniRef90_A0A374HMN2	328.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0011689_8	1410670.JHXF01000015_gene2270	300.0	0	helicase	N/A
PADLOC	UHGV-0011689_8	mREase_IV_00005	99.6	3.1e-29	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0011689_8	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0011689_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0011689_8	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0011689_8	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_9	phrog_93	44.7	0.0000000000015	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_9	UniRef90_A0A3E3AEG4	94.7	5.58e-23	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0011689_9	90410.Q9XJD1_9CAUD	53.9	0.0000000876	hydrolase activity, acting on ester bonds	N/A
Pfam	UHGV-0011689_9	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0011689_10	phrog_236	100.3	3.5e-29	nucleotide kinase	other
UniRef90	UHGV-0011689_10	UniRef90_A0A8D9PGN7	132.0	3.45e-38	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-0011689_10	1123263.AUKY01000015_gene1590	88.2	4.86e-22	N/A	N/A
Pfam	UHGV-0011689_10	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0011689_10	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_12	phrog_6721	275.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0011689_12	428125.CLOLEP_01387	249.0	0	N/A	N/A
structural_annotation	UHGV-0011689_12	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_13	phrog_4856	68.8	8.9e-20	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0011689_13	UniRef90_E2NR83	160.0	0	MazG domain-containing protein	N/A
Pfam	UHGV-0011689_13	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
structural_annotation	UHGV-0011689_13	MF_01019,NF002747,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_14	phrog_4019	114.8	3.4e-34	N/A	unknown function
UniRef90	UHGV-0011689_14	UniRef90_F9PY75	92.0	7.93e-22	Conserved domain protein	N/A
PHROG	UHGV-0011689_15	phrog_3878	46.1	0.00000000000084	N/A	unknown function
structural_annotation	UHGV-0011689_16	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011689_17	1336234.JAGN01000004_gene538	49.7	0.00000614	N/A	N/A
PHROG	UHGV-0011689_18	phrog_22292	78.7	6.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0011689_18	1232446.BAIE02000002_gene811	61.2	0.00000000126	N/A	N/A
KOfam	UHGV-0011689_22	K07171	83.2	4.8e-24	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0011689_22	phrog_1936	124.3	8.2e-37	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0011689_22	UniRef90_A0A1C5MWG4	142.0	2.61999e-40	mRNA interferase MazF4	N/A
eggNOG-mapper	UHGV-0011689_22	411461.DORFOR_01157	113.0	7.12e-29	N/A	N/A
Pfam	UHGV-0011689_22	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0011689_22	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0011689_22	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_23	phrog_799	87.0	2.1e-25	DNA methyltransferase	other
UniRef90	UHGV-0011689_23	UniRef90_UPI00164E7D72	261.0	0	sugar-phospahte nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0011689_23	1235797.C816_04032	182.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
Pfam	UHGV-0011689_23	PF13651	N/A	N/A	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
COG	UHGV-0011689_23	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0011689_23	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_24	phrog_22740	83.5	1.8e-24	N/A	unknown function
UniRef90	UHGV-0011689_24	UniRef90_A0A174XE96	105.0	6.19e-27	DNA N-6-adenine-methyltransferase of bacteriophage	N/A
eggNOG-mapper	UHGV-0011689_24	411468.CLOSCI_00567	92.4	9.48e-22	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0011689_24	oMTase_00015	77.1	3.9e-22	orphan methyltransferase	RM
Pfam	UHGV-0011689_24	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0011689_29	PF15959	N/A	N/A	N/A	N/A
KOfam	UHGV-0011689_31	K02316	83.5	2.5e-24	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0011689_31	phrog_864	204.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_31	UniRef90_UPI001C2539AF	511.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011689_31	1219626.HMPREF1639_07360	105.0	1.53e-20	D5 N terminal like	N/A
Pfam	UHGV-0011689_31	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-0011689_31	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-0011689_31	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0011689_31	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0011689_31	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_32	phrog_606	42.0	0.000000000013	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0011689_32	931276.Cspa_c57180	51.2	0.00000571	DNA-packaging protein gp3	N/A
Pfam	UHGV-0011689_32	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
UniRef90	UHGV-0011689_33	UniRef90_A0A1C6GC44	156.0	3.08005e-42	Glutamine amidotransferases class-II	N/A
eggNOG-mapper	UHGV-0011689_33	1401067.HMPREF0872_03875	107.0	8.85e-25	N/A	N/A
structural_annotation	UHGV-0011689_33	MF_01931,TIGR01134,COG0034	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_34	phrog_16683	114.3	9.4e-34	N/A	unknown function
UniRef90	UHGV-0011689_34	UniRef90_UPI001C125BE3	122.0	2.62e-27	amidoligase family protein	N/A
eggNOG-mapper	UHGV-0011689_34	1007096.BAGW01000006_gene1758	116.0	5.03e-26	Putative amidoligase enzyme	N/A
structural_annotation	UHGV-0011689_34	PF12224,MF_02111,NF010044,COG2170	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011689_35	UniRef90_UPI0018AB0909	50.1	0.00000424	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0011689_35	PF12844,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_36	phrog_125	49.1	0.00000000000011	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_36	UniRef90_A0A2B0JGP1	64.3	0.00000000000298	Resolvase (Fragment)	N/A
eggNOG-mapper	UHGV-0011689_36	1235835.C814_02364	63.5	0.0000000000137	Resolvase, N terminal domain	N/A
Pfam	UHGV-0011689_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0011689_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0011689_37	K14060	61.3	2.1e-17	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0011689_37	phrog_125	56.3	7e-16	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011689_37	UniRef90_UPI001D051D0E	80.5	4.16e-18	recombinase family protein	N/A
eggNOG-mapper	UHGV-0011689_37	1120998.AUFC01000001_gene2016	76.6	6.4e-16	Resolvase, N terminal domain	N/A
Pfam	UHGV-0011689_37	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0011689_37	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
COG	UHGV-0011689_37	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0011689_38	phrog_38	210.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0011689_38	UniRef90_A0A318EQM2	461.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0011689_38	1123263.AUKY01000015_gene1608	503.0	0	chromosome segregation	N/A
COG	UHGV-0011689_38	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011689_38	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011689_39	COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_40	phrog_64	192.9	0	portal protein	head and packaging
UniRef90	UHGV-0011689_40	UniRef90_A0A3E3AE79	430.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0011689_40	1232453.BAIF02000058_gene1625	246.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0011689_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0011689_40	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_42	phrog_544	43.1	0.0000000000005	major head protein	head and packaging
eggNOG-mapper	UHGV-0011689_42	428127.EUBDOL_01555	269.0	0	N/A	N/A
structural_annotation	UHGV-0011689_42	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011689_44	UniRef90_A0A7C7ERG0	108.0	3.15e-28	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0011689_44	1298920.KI911353_gene2658	48.9	0.00000616	N/A	N/A
structural_annotation	UHGV-0011689_44	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011689_45	1232453.BAIF02000058_gene1630	62.0	0.000000000117	N/A	N/A
UniRef90	UHGV-0011689_46	UniRef90_UPI001BBD4500	119.0	2.38e-31	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0011689_46	397290.C810_01411	71.2	0.000000000000329	N/A	N/A
structural_annotation	UHGV-0011689_46	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011689_47	1121333.JMLH01000047_gene1014	64.3	0.0000000000307	N/A	N/A
structural_annotation	UHGV-0011689_47	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_48	phrog_158	40.5	0.000000000044	major tail protein	tail
eggNOG-mapper	UHGV-0011689_48	469596.HMPREF9488_01310	226.0	0	N/A	N/A
structural_annotation	UHGV-0011689_48	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-0011689_49	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0011689_49	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011689_50	1121333.JMLH01000047_gene1011	99.4	2.63e-25	N/A	N/A
PHROG	UHGV-0011689_51	phrog_1535	269.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0011689_51	UniRef90_A8RD17	233.0	0	Cation diffusion facilitator family transporter	N/A
eggNOG-mapper	UHGV-0011689_51	428127.EUBDOL_01563	233.0	0	homoserine transmembrane transporter activity	N/A
COG	UHGV-0011689_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0011689_52	phrog_1194	93.0	2.4e-27	N/A	unknown function
UniRef90	UHGV-0011689_52	UniRef90_G0IA27	83.2	3.06e-18	N/A	N/A
eggNOG-mapper	UHGV-0011689_52	1294142.CINTURNW_1701	103.0	3.45e-27	N/A	N/A
Pfam	UHGV-0011689_52	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0011689_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_53	phrog_6616	123.5	8e-37	tail protein	tail
eggNOG-mapper	UHGV-0011689_53	1121333.JMLH01000047_gene1007	388.0	0	N/A	N/A
structural_annotation	UHGV-0011689_53	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_54	phrog_38044	110.9	0	N/A	unknown function
UniRef90	UHGV-0011689_54	UniRef90_I7ARM6	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011689_54	1504823.CCMM01000008_gene1029	316.0	0	N/A	N/A
structural_annotation	UHGV-0011689_54	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_55	phrog_18110	43.0	0.0000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0011689_55	411465.PEPMIC_00746	75.5	0.00000000000104	Prophage endopeptidase tail	N/A
COG	UHGV-0011689_55	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0011689_56	phrog_372	222.9	0	tail protein	tail
UniRef90	UHGV-0011689_56	UniRef90_UPI0006C32325	1061.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011689_56	1211844.CBLM010000016_gene1479	209.0	0	N/A	N/A
Pfam	UHGV-0011689_56	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0011689_56	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_57	phrog_199	59.5	3.8e-17	holin	lysis
UniRef90	UHGV-0011689_57	UniRef90_E2NU60	294.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0011689_57	742723.HMPREF9477_00889	193.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0011689_57	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0011689_57	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0011689_57	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0011689_57	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0011689_58	phrog_774	56.9	4.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0011689_58	397290.C810_05225	78.6	5.73e-18	N/A	N/A
KOfam	UHGV-0011689_59	K01448	129.6	2.8e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0011689_59	phrog_435	187.2	0	endolysin	lysis
UniRef90	UHGV-0011689_59	UniRef90_UPI001EE924D3	246.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0011689_59	411461.DORFOR_01187	216.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0011689_59	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0011689_59	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0011689_59	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0011689_59	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A