UHGV-0011811 (vOTU-042627)

Viral Genome: UHGV-0011811

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0011811
vOTU ID	vOTU-042627
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_14_1160__NODE_1215_length_40910_cov_10.828325
Associated BioSample	SAMEA4765620
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.52
Jumbo phage	No

Genome content
Genome length (bp)	40,887
GC content	52.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	94%
Average CDS length (bps)	611.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011811_1	K24213	49.1	0.000000000000068	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0011811_1	phrog_4433	242.9	0	N/A	unknown function
UniRef90	UHGV-0011811_1	UniRef90_UPI00045B9709	69.3	0.0000000000464	collagen-like protein	N/A
eggNOG-mapper	UHGV-0011811_1	269482.Bcep1808_1157	93.6	9.07e-20	Flagellar Assembly Protein A	N/A
Pfam	UHGV-0011811_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0011811_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0011811_2	phrog_1468	49.3	0.000000000000044	transcriptional repressor	transcription regulation
UniRef90	UHGV-0011811_2	UniRef90_UPI001C1245AB	49.3	0.00000354	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_2	1347392.CCEZ01000031_gene1729	47.0	0.00000589	Helix-turn-helix	N/A
Pfam	UHGV-0011811_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011811_2	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0011811_3	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0011811_4	K22300	55.7	0.000000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0011811_4	phrog_3	44.3	0.0000000000069	transcriptional repressor	transcription regulation
UniRef90	UHGV-0011811_4	UniRef90_A0A3D3Y6C1	69.3	0.0000000000000376	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0011811_4	693746.OBV_25500	55.5	0.00000000214	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0011811_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011811_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0011811_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011811_5	UniRef90_UPI001896E330	58.2	0.0000000198	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0011811_5	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011811_7	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0011811_8	K14059	152.0	7.00649e-45	int; integrase	N/A
PHROG	UHGV-0011811_8	phrog_1	146.9	1.59748e-43	integrase	integration and excision
UniRef90	UHGV-0011811_8	UniRef90_A0A3D2HVQ9	283.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_8	742738.HMPREF9460_03449	84.0	0.00000000000000332	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0011811_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011811_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0011811_8	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011811_9	1378168.N510_03079	60.1	0.0000000104	N/A	N/A
structural_annotation	UHGV-0011811_12	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_13	phrog_14030	131.9	4.3e-39	N/A	unknown function
UniRef90	UHGV-0011811_13	UniRef90_A0A133ZYW3	159.0	3.92364e-44	Cell wall-binding repeat protein	N/A
eggNOG-mapper	UHGV-0011811_13	1095750.HMPREF9970_0318	150.0	2.51996e-41	Putative cell wall binding repeat	N/A
COG	UHGV-0011811_13	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0011811_14	phrog_443	61.2	2.8e-17	holin	lysis
UniRef90	UHGV-0011811_14	UniRef90_UPI001BB47E53	92.4	2.41e-23	holin	N/A
eggNOG-mapper	UHGV-0011811_14	1235797.C816_04172	90.5	2.11e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0011811_14	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0011811_14	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_15	phrog_937	48.6	0.00000000000015	hemolysin	other
UniRef90	UHGV-0011811_16	UniRef90_A0A1C6H462	424.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_16	1408437.JNJN01000060_gene452	365.0	0	heme binding	N/A
COG	UHGV-0011811_16	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-0011811_17	693746.OBV_01600	90.5	1.28e-16	N/A	N/A
eggNOG-mapper	UHGV-0011811_18	1235797.C816_04174	137.0	1.21e-38	N/A	N/A
PHROG	UHGV-0011811_20	phrog_37900	54.6	3.4e-17	N/A	unknown function
UniRef90	UHGV-0011811_20	UniRef90_UPI00051B4A1C	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011811_20	1519439.JPJG01000060_gene1894	234.0	0	N/A	N/A
Pfam	UHGV-0011811_20	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0011811_20	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0011811_20	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011811_21	411473.RUMCAL_00420	70.9	0.000000000174	nuclear chromosome segregation	N/A
COG	UHGV-0011811_21	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0011811_22	phrog_156	133.8	8.7e-40	portal protein	head and packaging
eggNOG-mapper	UHGV-0011811_22	693746.OBV_01670	600.0	0	N/A	N/A
structural_annotation	UHGV-0011811_22	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_24	phrog_3287	49.0	0.0000000000000011	virion structural protein	head and packaging
UniRef90	UHGV-0011811_24	UniRef90_A0A4D7ASB8	498.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011811_24	693746.OBV_01680	487.0	0	N/A	N/A
structural_annotation	UHGV-0011811_24	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_25	phrog_422	154.1	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-0011811_25	UniRef90_A0A6A8VJ17	332.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0011811_25	1408437.JNJN01000001_gene1710	246.0	0	N/A	N/A
Pfam	UHGV-0011811_25	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0011811_25	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_26	phrog_14606	42.0	0.0000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0011811_26	755731.Clo1100_2435	69.3	0.000000000108	N/A	N/A
eggNOG-mapper	UHGV-0011811_27	693746.OBV_01730	73.9	0.00000000000000563	N/A	N/A
structural_annotation	UHGV-0011811_27	PF11650	N/A	N/A	N/A	N/A
KOfam	UHGV-0011811_28	K06909	139.8	2.20004e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0011811_28	phrog_979	120.9	2.4e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0011811_28	UniRef90_G4KR97	537.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_28	693746.OBV_01690	537.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0011811_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0011811_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0011811_28	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_31	phrog_33872	57.5	2.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0011811_31	693746.OBV_19740	51.2	0.000000359	N/A	N/A
structural_annotation	UHGV-0011811_32	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_33	phrog_15863	163.0	0	N/A	unknown function
UniRef90	UHGV-0011811_33	UniRef90_A0A1Y3R3M0	234.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_33	693746.OBV_01780	173.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0011811_33	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0011811_35	PF17917	N/A	N/A	N/A	N/A
KOfam	UHGV-0011811_36	K01520	152.1	4.2039e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0011811_36	phrog_135	138.7	2.79993e-41	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011811_36	UniRef90_A0A3D3Y5Q7	246.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0011811_36	887929.HMP0721_1278	143.0	3.97969e-42	dUTPase	N/A
Pfam	UHGV-0011811_36	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0011811_36	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0011811_36	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0011811_36	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011811_39	1444310.JANV01000162_gene1216	113.0	4.25e-27	N/A	N/A
PHROG	UHGV-0011811_40	phrog_1770	53.3	0.0000000000000054	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0011811_40	536233.CLO_1822	151.0	2.38221e-44	N/A	N/A
structural_annotation	UHGV-0011811_40	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011811_41	UniRef90_A0A374AB28	192.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0011811_41	935948.KE386495_gene2250	98.6	1.56e-23	N/A	N/A
Pfam	UHGV-0011811_41	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0011811_41	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_43	phrog_599	50.6	0.000000000000041	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0011811_43	UniRef90_A0A412AV49	82.0	7.92e-19	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-0011811_43	1235790.C805_00069	63.5	0.00000000000244	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0011811_43	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0011811_43	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0011811_43	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_44	phrog_478	125.0	2.9e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0011811_44	UniRef90_R6E548	156.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0011811_44	1111121.HMPREF1247_0834	98.6	1.13e-24	N/A	N/A
PHROG	UHGV-0011811_45	phrog_38832	60.2	9.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0011811_45	1232443.BAIA02000078_gene48	67.4	0.00000000000148	N/A	N/A
PHROG	UHGV-0011811_46	phrog_31107	80.1	1.8e-23	N/A	unknown function
KOfam	UHGV-0011811_49	K00558	136.8	4.69435e-43	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0011811_49	phrog_363	230.1	0	DNA methyltransferase	other
UniRef90	UHGV-0011811_49	UniRef90_UPI00082E0CBC	361.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0011811_49	742738.HMPREF9460_04053	281.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0011811_49	MTase_II_00058	123.0	3.7e-36	Type II methyltransferase	RM
Pfam	UHGV-0011811_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0011811_49	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0011811_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0011811_49	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_52	phrog_15768	50.9	0.000000000000027	N/A	unknown function
UniRef90	UHGV-0011811_52	UniRef90_A0A7C1PUJ6	105.0	2.51e-24	N/A	N/A
COG	UHGV-0011811_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0011811_52	PF07120,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0011811_53	K03111	134.1	1.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0011811_53	phrog_44	135.5	3.5e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011811_53	UniRef90_UPI001C02B0E9	184.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0011811_53	693746.OBV_12860	169.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0011811_53	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0011811_53	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0011811_53	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0011811_53	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0011811_53	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_55	phrog_7370	60.5	2.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011811_55	UniRef90_A0A3D1LDS4	152.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0011811_55	1232449.BAHV02000016_gene1841	85.5	2.29e-20	HNH nucleases	N/A
Pfam	UHGV-0011811_55	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0011811_56	phrog_72	68.2	1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011811_56	UniRef90_A0A8D9PDS2	158.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0011811_56	445972.ANACOL_01825	157.0	0	N/A	N/A
structural_annotation	UHGV-0011811_56	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011811_57	UniRef90_B0PAM4	142.0	1.94e-39	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0011811_57	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_58	phrog_659	42.4	0.0000000000077	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011811_58	UniRef90_A0A845QLQ8	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011811_58	33035.JPJF01000135_gene5082	135.0	3.42e-37	N/A	N/A
Pfam	UHGV-0011811_58	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0011811_58	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_60	phrog_4973	45.8	0.0000000000007	N/A	unknown function
UniRef90	UHGV-0011811_60	UniRef90_A0A3D3Y0P8	61.2	0.0000000000489	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0011811_60	1072685.IX83_07155	52.8	0.000000013	Helix-turn-helix domain	N/A
Pfam	UHGV-0011811_60	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0011811_60	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0011811_63	phrog_27197	96.2	2.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0011811_63	394503.Ccel_3068	55.8	0.0000000415	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0011811_63	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A