UHGV-0011994 (vOTU-066253)

Viral Genome: UHGV-0011994

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0011994
vOTU ID	vOTU-066253
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_14_1557__NODE_998_length_58462_cov_12.566550_1
Associated BioSample	SAMEA4765847
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.97 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.94
Jumbo phage	No

Genome content
Genome length (bp)	41,095
GC content	63.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	96%
Average CDS length (bps)	857.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011994_1	K07644	280.1	0	cusS, copS, silS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]	N/A
PHROG	UHGV-0011994_1	phrog_857	222.6	0	N/A	unknown function
UniRef90	UHGV-0011994_1	UniRef90_A0A3E2TB51	555.0	0	Histidine kinase	N/A
eggNOG-mapper	UHGV-0011994_1	658086.HMPREF0994_06805	536.0	0	ATPase histidine kinase DNA gyrase B HSP90 domain protein	N/A
Pfam	UHGV-0011994_1	PF00672	N/A	N/A	HAMP domain	HAMP
Pfam	UHGV-0011994_1	PF00512	N/A	N/A	His Kinase A (phospho-acceptor) domain	HisKA
Pfam	UHGV-0011994_1	PF02518	N/A	N/A	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
COG	UHGV-0011994_1	COG5002	N/A	N/A	Sensor histidine kinase WalK	N/A
structural_annotation	UHGV-0011994_1	PF02518,PF00512,MF_01837,NF040691,COG0642	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011994_4	UniRef90_A0A1Q9JGI6	143.0	4.69001e-41	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011994_4	1118055.CAGU01000028_gene99	118.0	4.16e-32	N/A	N/A
structural_annotation	UHGV-0011994_4	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
KOfam	UHGV-0011994_5	K01446	85.3	4.9e-25	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-0011994_5	phrog_35436	135.5	3.09999e-40	amidase	lysis
UniRef90	UHGV-0011994_5	UniRef90_A0A350TLR9	211.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0011994_5	1504823.CCMM01000008_gene1019	182.0	0	Ami_2	N/A
Pfam	UHGV-0011994_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0011994_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0011994_5	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0011994_5	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_6	phrog_1129	64.7	9.7e-19	holin	lysis
UniRef90	UHGV-0011994_6	UniRef90_R5D220	110.0	1.33e-29	Putative holin	N/A
eggNOG-mapper	UHGV-0011994_6	1007096.BAGW01000032_gene1582	107.0	3.7e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0011994_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0011994_6	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011994_7	1235797.C816_04174	155.0	0	N/A	N/A
PHROG	UHGV-0011994_9	phrog_10993	51.1	1.4e-17	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0011994_9	UniRef90_A0A252F2M2	259.0	0	N/A	N/A
Pfam	UHGV-0011994_9	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0011994_9	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011994_9	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0011994_10	K00986	114.2	1.4e-33	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0011994_10	phrog_1423	179.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011994_10	UniRef90_A0A252F313	276.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0011994_10	1519439.JPJG01000059_gene1943	125.0	1.33e-29	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0011994_10	icity0040	92.4	7.6e-27	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0011994_10	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0011994_10	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0011994_10	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_12	phrog_3206	45.3	0.0000000000011	Avd protein of DGR	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0011994_12	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_14	phrog_1863	65.9	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0011994_14	748224.HMPREF9436_01412	84.7	7.99e-21	N/A	N/A
PHROG	UHGV-0011994_15	phrog_15594	61.5	9.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0011994_15	742742.HMPREF9452_00376	53.9	0.000000308	tail collar domain protein	N/A
COG	UHGV-0011994_15	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0011994_16	phrog_22978	503.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0011994_16	1410650.JHWL01000003_gene2814	504.0	0	N/A	N/A
Pfam	UHGV-0011994_16	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0011994_17	phrog_2649	67.0	2.5e-21	endolysin	lysis
UniRef90	UHGV-0011994_17	UniRef90_A0A1Q6JKP1	192.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011994_17	1410650.JHWL01000003_gene2815	136.0	5.97e-33	N/A	N/A
Pfam	UHGV-0011994_17	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-0011994_18	phrog_372	273.8	0	tail protein	tail
UniRef90	UHGV-0011994_18	UniRef90_A0A3N0HXV0	268.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0011994_18	658655.HMPREF0988_00525	224.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0011994_18	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0011994_18	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0011994_18	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011994_19	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_20	phrog_511	226.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0011994_20	1410650.JHWL01000003_gene2827	341.0	0	N/A	N/A
structural_annotation	UHGV-0011994_20	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_21	phrog_12105	103.5	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0011994_21	1519439.JPJG01000060_gene1891	88.2	7.62e-21	N/A	N/A
PHROG	UHGV-0011994_23	phrog_1357	205.5	0	major head protein	head and packaging
UniRef90	UHGV-0011994_23	UniRef90_A0A2V2CFL5	555.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0011994_23	1410650.JHWL01000003_gene2830	264.0	0	N/A	N/A
Pfam	UHGV-0011994_23	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0011994_23	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0011994_23	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_24	phrog_13908	167.9	0	N/A	unknown function
COG	UHGV-0011994_24	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_25	phrog_4478	40.1	0.000000000035	peptidase	other
Pfam	UHGV-0011994_25	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0011994_25	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011994_25	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_26	phrog_156	320.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0011994_26	1410650.JHWL01000003_gene2833	553.0	0	N/A	N/A
structural_annotation	UHGV-0011994_26	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0011994_27	K06909	135.5	4.79999e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0011994_27	phrog_979	138.7	1.19951e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0011994_27	UniRef90_A0A810Q5R0	608.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0011994_27	1410650.JHWL01000003_gene2834	575.0	0	N/A	N/A
Pfam	UHGV-0011994_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0011994_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0011994_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011994_28	UniRef90_A0A8D9PDT2	127.0	3.3e-35	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0011994_28	428125.CLOLEP_01805	99.8	4.81e-25	N/A	N/A
Pfam	UHGV-0011994_28	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0011994_28	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_30	phrog_3584	149.0	2.38221e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0011994_30	693746.OBV_25240	97.8	1.32e-21	N/A	N/A
structural_annotation	UHGV-0011994_30	PF01446,NF041486	N/A	N/A	N/A	N/A
Pfam	UHGV-0011994_31	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-0011994_33	phrog_5781	90.4	1.6e-26	N/A	unknown function
UniRef90	UHGV-0011994_33	UniRef90_A0A2V2GDQ1	105.0	3.21e-27	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0011994_33	573061.Clocel_3558	99.0	2.72e-25	N/A	N/A
Pfam	UHGV-0011994_33	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0011994_33	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0011994_33	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_35	phrog_15609	222.6	0	N/A	unknown function
UniRef90	UHGV-0011994_35	UniRef90_UPI001C12751D	154.0	7.55006e-41	N/A	N/A
eggNOG-mapper	UHGV-0011994_35	1501230.ET33_21155	154.0	1.62004e-41	N/A	N/A
Pfam	UHGV-0011994_35	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0011994_35	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0011994_35	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_36	phrog_8470	262.8	0	N/A	unknown function
UniRef90	UHGV-0011994_36	UniRef90_UPI0019580896	397.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0011994_36	1226322.HMPREF1545_00100	393.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0011994_36	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0011994_36	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0011994_37	phrog_36399	87.8	9.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0011994_37	1226322.HMPREF1545_00099	80.5	4.09e-18	N/A	N/A
PHROG	UHGV-0011994_42	phrog_7566	97.8	5.6e-29	N/A	unknown function
UniRef90	UHGV-0011994_42	UniRef90_A0A8D9UHC0	105.0	1.11e-27	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0011994_42	1507.HMPREF0262_00433	96.7	3.62e-25	N/A	N/A
UniRef90	UHGV-0011994_45	UniRef90_UPI001BB47CA7	73.9	0.00000000000000143	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0011994_45	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A