UHGV-0012016 (vOTU-042634)

Viral Genome: UHGV-0012016

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0012016
vOTU ID	vOTU-042634
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_23_1060__NODE_1229_length_48016_cov_43.713073
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.57
Jumbo phage	No

Genome content
Genome length (bp)	47,939
GC content	45.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	651.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0012016_1	UniRef90_A0A7M1RTM1	95.1	1.51e-21	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0012016_1	1378168.N510_03079	59.7	0.0000000148	N/A	N/A
structural_annotation	UHGV-0012016_2	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_3	phrog_16490	83.6	5.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0012016_3	445972.ANACOL_01880	84.0	1.26e-16	N/A	N/A
eggNOG-mapper	UHGV-0012016_4	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0012016_5	phrog_21718	48.6	0.00000000000014	N/A	unknown function
PHROG	UHGV-0012016_8	phrog_9467	58.8	7.3e-17	N/A	unknown function
UniRef90	UHGV-0012016_8	UniRef90_UPI00035C8C59	60.5	0.00000000103	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0012016_8	1415774.U728_724	67.0	0.000000000000663	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
dbAPIS	UHGV-0012016_8	APIS052	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012016_9	1392502.JNIO01000008_gene1280	232.0	0	N/A	N/A
structural_annotation	UHGV-0012016_9	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_11	phrog_4105	82.8	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0012016_11	33035.JPJF01000043_gene996	78.6	3.07e-17	N/A	N/A
PHROG	UHGV-0012016_12	phrog_2837	67.4	2.3e-19	tail protein	tail
UniRef90	UHGV-0012016_12	UniRef90_A0A1Q6R2G9	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012016_12	520709.F985_01945	58.2	0.0000000318	N/A	N/A
Pfam	UHGV-0012016_12	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0012016_12	PF14301,COG1382	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012016_13	PF08948	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_14	K06823	50.5	0.0000000000000085	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-0012016_14	phrog_3904	86.7	3.4e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-0012016_14	1123288.SOV_1c10770	85.1	0.0000000000000233	Right handed beta helix region	N/A
Pfam	UHGV-0012016_14	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0012016_14	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0012016_14	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_15	phrog_9880	540.3	0	N/A	unknown function
UniRef90	UHGV-0012016_15	UniRef90_A0A1Q6RQR6	4303.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012016_15	1123288.SOV_1c10750	187.0	2.66247e-44	N/A	N/A
Pfam	UHGV-0012016_15	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0012016_16	phrog_10475	44.8	0.0000000000008	endolysin	lysis
UniRef90	UHGV-0012016_16	UniRef90_A0A1Q6RQM5	1115.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0012016_16	1123288.SOV_2c10740	139.0	1.45e-31	N/A	N/A
Pfam	UHGV-0012016_16	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0012016_16	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_17	phrog_418	127.2	3.2e-38	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0012016_17	568816.Acin_1826	103.0	1.94e-24	N/A	N/A
structural_annotation	UHGV-0012016_17	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_18	phrog_308	105.0	5.8e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0012016_18	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_19	phrog_376	605.5	0	tail protein	tail
UniRef90	UHGV-0012016_19	UniRef90_A0A0U1KV93	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012016_19	568816.Acin_1828	669.0	0	N/A	N/A
Pfam	UHGV-0012016_19	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0012016_19	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_20	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0012016_20	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0012016_20	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0012016_20	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_21	phrog_427	63.2	4e-18	N/A	unknown function
structural_annotation	UHGV-0012016_21	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_22	phrog_212	206.2	0	major head protein	head and packaging
UniRef90	UHGV-0012016_22	UniRef90_A0A6J5KPX9	218.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0012016_22	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-0012016_22	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0012016_22	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_23	phrog_458	153.6	1.4013e-45	protease	other
eggNOG-mapper	UHGV-0012016_23	568816.Acin_1832	96.3	1.12e-21	N/A	N/A
PHROG	UHGV-0012016_24	phrog_528	105.7	1.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0012016_24	1401067.HMPREF0872_06805	94.0	3.39e-23	N/A	N/A
PHROG	UHGV-0012016_25	phrog_332	434.0	0	head-tail adaptor	connector
UniRef90	UHGV-0012016_25	UniRef90_UPI001F3F9DD9	550.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0012016_25	568816.Acin_1834	608.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0012016_25	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0012016_25	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_27	K06909	84.5	1.4e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012016_27	phrog_2	156.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0012016_27	UniRef90_UPI001D00EC11	409.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0012016_27	568816.Acin_1836	417.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0012016_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0012016_27	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0012016_27	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012016_29	UniRef90_UPI00103300F2	62.8	0.0000000000343	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0012016_29	1408437.JNJN01000040_gene204	48.9	0.0000023	N/A	N/A
structural_annotation	UHGV-0012016_29	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_32	phrog_15863	287.5	0	N/A	unknown function
UniRef90	UHGV-0012016_32	UniRef90_R6WLL6	598.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0012016_32	693746.OBV_01780	124.0	4.24e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0012016_32	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-0012016_38	K03111	55.9	0.0000000000000011	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0012016_38	phrog_44	59.3	1.1e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012016_38	UniRef90_R6WGR4	256.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0012016_38	546268.NEISUBOT_05135	63.9	0.0000000000304	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0012016_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0012016_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0012016_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0012016_38	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_39	K01160	60.3	5.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0012016_39	phrog_140	134.3	5.8e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012016_39	UniRef90_A0A316S9J1	144.0	1.23006e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0012016_39	743719.PaelaDRAFT_5642	127.0	7.72e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0012016_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0012016_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0012016_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012016_41	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_42	phrog_9207	43.7	0.0000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0012016_42	264730.PSPPH_2145	55.1	0.000000215	N/A	N/A
PHROG	UHGV-0012016_43	phrog_2776	61.3	1.2e-17	N/A	unknown function
UniRef90	UHGV-0012016_43	UniRef90_A0A2S7ZCT0	97.1	1.67e-22	DNA repair protein MmcB-related protein	N/A
Pfam	UHGV-0012016_43	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-0012016_43	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012016_44	UniRef90_A0A6N7WVF3	71.6	0.000000000000305	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0012016_45	phrog_10714	62.1	8.4e-18	N/A	unknown function
structural_annotation	UHGV-0012016_45	PF21173	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012016_47	PF21098	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012016_51	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_54	phrog_5968	149.4	1.54143e-44	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012016_54	UniRef90_R6WTP4	189.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0012016_54	1211817.CCAT010000007_gene1058	129.0	9.65e-33	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0012016_54	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0012016_54	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0012016_54	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0012016_54	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_56	K07455	178.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0012016_56	phrog_148	181.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012016_56	UniRef90_R6XVK6	386.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0012016_56	1234664.AMRO01000024_gene1791	170.0	0	RecT family	N/A
Pfam	UHGV-0012016_56	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0012016_56	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0012016_56	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0012016_56	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012016_57	UniRef90_R6WLK2	120.0	4.8e-34	Conserved domain protein	N/A
Pfam	UHGV-0012016_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012016_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0012016_58	phrog_434	329.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012016_58	UniRef90_R6WGP6	597.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0012016_58	706434.HMPREF9429_00770	361.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0012016_58	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0012016_58	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0012016_58	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0012016_58	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_59	phrog_14367	53.1	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0012016_59	UniRef90_R6WTN1	169.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0012016_59	397291.C804_02419	49.3	0.00000615	LysM domain	N/A
Pfam	UHGV-0012016_59	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0012016_59	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0012016_59	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012016_60	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0012016_61	phrog_6058	77.3	1.1e-22	N/A	unknown function
UniRef90	UHGV-0012016_61	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0012016_61	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0012016_61	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_64	K18830	62.0	1.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0012016_64	phrog_8	48.4	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012016_64	UniRef90_R6X1Y8	218.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0012016_64	1151292.QEW_0725	93.6	4.92e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0012016_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012016_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0012016_64	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012016_65	UniRef90_R6XVI4	379.0	0	Inner membrane protein YhaI	N/A
eggNOG-mapper	UHGV-0012016_65	585503.HMPREF7545_0288	70.9	0.00000000000103	Membrane	N/A
Pfam	UHGV-0012016_65	PF05656	N/A	N/A	N/A	DUF805
COG	UHGV-0012016_65	COG3152	N/A	N/A	N/A	N/A
KOfam	UHGV-0012016_66	K14059	122.6	5e-36	int; integrase	N/A
PHROG	UHGV-0012016_66	phrog_1	140.5	1.49995e-41	integrase	integration and excision
UniRef90	UHGV-0012016_66	UniRef90_R6X1Y3	661.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0012016_66	1123288.SOV_2c10320	322.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0012016_66	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0012016_66	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0012016_66	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A