UHGV-0012390 (vOTU-042402)

Viral Genome: UHGV-0012390

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0012390
vOTU ID	vOTU-042402
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_4_2225__NODE_1474_length_57174_cov_43.531499_1
Associated BioSample	SAMEA4766196
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.04
Jumbo phage	No

Genome content
Genome length (bp)	32,407
GC content	41.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	684.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0012390_1	K01447	55.8	9.6e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0012390_1	phrog_20388	299.3	0	endolysin	lysis
UniRef90	UHGV-0012390_1	UniRef90_A0A374N1L8	540.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0012390_1	1203606.HMPREF1526_00253	315.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0012390_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0012390_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0012390_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0012390_1	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_2	phrog_443	65.0	1.8e-18	holin	lysis
UniRef90	UHGV-0012390_2	UniRef90_R6R2Q3	90.9	1.1e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0012390_2	1235797.C816_04172	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0012390_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0012390_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_3	phrog_1863	72.3	5.2e-22	N/A	unknown function
UniRef90	UHGV-0012390_3	UniRef90_UPI001F223E8B	103.0	1.86e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0012390_3	1226322.HMPREF1545_04027	73.2	4.57e-16	N/A	N/A
eggNOG-mapper	UHGV-0012390_4	1129192.A0A0E3D9F7_9CAUD	62.8	0.000000239	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	N/A
Pfam	UHGV-0012390_4	PF10096	N/A	N/A	N/A	DUF2334
structural_annotation	UHGV-0012390_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_6	phrog_1194	62.9	4.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0012390_6	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0012390_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0012390_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_7	phrog_1535	203.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0012390_7	UniRef90_A0A1C6JAZ8	143.0	2.42e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0012390_7	411459.RUMOBE_01384	136.0	7.76e-30	phage tail tape measure protein	N/A
COG	UHGV-0012390_7	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0012390_8	phrog_9700	163.5	0	N/A	unknown function
UniRef90	UHGV-0012390_8	UniRef90_UPI001B3C6D17	222.0	0	leucine-rich repeat protein	N/A
eggNOG-mapper	UHGV-0012390_8	476272.RUMHYD_01979	173.0	0	N/A	N/A
PHROG	UHGV-0012390_9	phrog_706	140.8	7.60064e-42	N/A	unknown function
UniRef90	UHGV-0012390_9	UniRef90_A0A2N0ULW2	370.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0012390_9	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0012390_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0012390_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_10	phrog_11299	137.5	6.09999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0012390_10	1298920.KI911353_gene2067	73.6	0.0000000000000136	N/A	N/A
structural_annotation	UHGV-0012390_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_11	phrog_3099	147.6	5.1848e-44	N/A	unknown function
eggNOG-mapper	UHGV-0012390_11	1160721.RBI_II00532	233.0	0	N/A	N/A
structural_annotation	UHGV-0012390_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_12	phrog_3266	103.5	1.4e-30	tail completion	connector
eggNOG-mapper	UHGV-0012390_12	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-0012390_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_13	phrog_556	117.5	4.1e-35	minor head protein	head and packaging
UniRef90	UHGV-0012390_13	UniRef90_UPI00189BC4F9	183.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0012390_13	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0012390_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0012390_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_14	phrog_3366	73.6	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0012390_14	1449050.JNLE01000003_gene3887	89.0	6.3e-21	N/A	N/A
Pfam	UHGV-0012390_14	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0012390_14	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_15	phrog_541	81.8	6.9e-24	head-tail adaptor	connector
UniRef90	UHGV-0012390_15	UniRef90_A0A371AQT0	108.0	2.75e-28	N/A	N/A
eggNOG-mapper	UHGV-0012390_15	1449050.JNLE01000003_gene3888	80.9	4.82e-18	N/A	N/A
PHROG	UHGV-0012390_16	phrog_422	227.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0012390_16	693746.OBV_18090	396.0	0	N/A	N/A
structural_annotation	UHGV-0012390_16	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_17	phrog_194	100.1	2.6e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0012390_17	UniRef90_A0A2N0ULW9	259.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0012390_17	658655.HMPREF0988_02561	162.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0012390_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0012390_18	phrog_2616	44.4	0.0000000000033	N/A	unknown function
structural_annotation	UHGV-0012390_18	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_19	phrog_478	129.3	1.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0012390_19	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0012390_19	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-0012390_21	phrog_581	313.8	0	minor head protein	head and packaging
UniRef90	UHGV-0012390_21	UniRef90_A0A2N0ULU5	740.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0012390_21	1449050.JNLE01000003_gene3892	365.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0012390_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0012390_21	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_22	phrog_533	236.2	0	portal protein	head and packaging
UniRef90	UHGV-0012390_22	UniRef90_A0A2N0ULU9	521.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0012390_22	1304866.K413DRAFT_3035	325.0	0	N/A	N/A
structural_annotation	UHGV-0012390_22	PF05133,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_23	phrog_533	55.1	7.9e-16	portal protein	head and packaging
eggNOG-mapper	UHGV-0012390_23	411461.DORFOR_01163	133.0	3.99e-35	N/A	N/A
KOfam	UHGV-0012390_24	K06909	396.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012390_24	phrog_3717	146.6	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0012390_24	UniRef90_A0A2N0ULW5	1033.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0012390_24	411461.DORFOR_01162	617.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0012390_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0012390_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0012390_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0012390_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0012390_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_25	phrog_36	81.9	8.6e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012390_25	UniRef90_A0A2N0UXQ6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012390_25	1401067.HMPREF0872_06835	95.1	3.66e-23	N/A	N/A
Pfam	UHGV-0012390_25	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0012390_25	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_26	phrog_25754	62.2	5.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0012390_26	97139.C824_00736	69.7	0.0000000000000584	N/A	N/A
structural_annotation	UHGV-0012390_26	PF06372,NF041655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012390_27	UniRef90_UPI000E4DC4DA	143.0	3.53001e-41	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0012390_27	PF15597	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012390_28	PF09871,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_29	phrog_599	47.1	0.00000000000045	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0012390_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0012390_29	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0012390_30	PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0012390_32	K14440	81.4	2.5e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0012390_32	phrog_62	412.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_32	UniRef90_A0A412L7W0	900.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0012390_32	97138.C820_00220	628.0	0	snf2 family	N/A
PADLOC	UHGV-0012390_32	ZorD1_00007	88.5	5.2e-26	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0012390_32	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0012390_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0012390_32	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0012390_32	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_33	phrog_93	78.1	1.1e-22	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_33	UniRef90_A0A412UNG8	199.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0012390_33	97138.C820_00219	107.0	7.72e-29	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0012390_33	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_34	phrog_256	1070.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_34	UniRef90_UPI001D06E26F	847.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0012390_34	1567012.A0A0A7RTG3_9VIRU	831.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0012390_34	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
structural_annotation	UHGV-0012390_34	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0012390_35	K02334	891.3	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0012390_35	phrog_17	408.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_35	UniRef90_A0A412UNJ8	1276.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0012390_35	1296660.S5M5X4_9CAUD	763.0	0	DNA polymerase family A	N/A
Pfam	UHGV-0012390_35	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0012390_35	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_36	phrog_112	217.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_36	UniRef90_A0A412UNI7	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012390_36	573061.Clocel_0760	239.0	0	N/A	N/A
Pfam	UHGV-0012390_36	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0012390_36	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_37	phrog_69	344.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012390_37	UniRef90_A0A412L7W2	772.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012390_37	1151292.QEW_2472	375.0	0	N/A	N/A
Pfam	UHGV-0012390_37	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0012390_37	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0012390_37	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0012390_38	phrog_408	62.1	8.7e-18	N/A	unknown function
UniRef90	UHGV-0012390_40	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0012390_40	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0012390_40	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0012390_40	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0012390_40	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0012390_40	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012390_42	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A