UHGV-0012500 (vOTU-021631)

Viral Genome: UHGV-0012500

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0012500
vOTU ID	vOTU-021631
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_6_1527__NODE_1600_length_39054_cov_16.079791_1
Associated BioSample	SAMEA4765818
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.23 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.965
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.63
Jumbo phage	No

Genome content
Genome length (bp)	26,285
GC content	69.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	95%
Average CDS length (bps)	610.54
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0012500_1	K14059	119.8	3.8e-35	int; integrase	N/A
PHROG	UHGV-0012500_1	phrog_1	106.5	2.9e-31	integrase	integration and excision
UniRef90	UHGV-0012500_1	UniRef90_UPI001106575D	272.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0012500_1	1504822.CCNO01000015_gene585	257.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0012500_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0012500_1	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0012500_2	K22300	63.6	3.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0012500_2	phrog_8	63.0	6.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012500_2	UniRef90_A0A1C7GMU2	62.8	0.000000000488	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0012500_2	1125712.HMPREF1316_1550	64.7	0.0000000000765	Peptidase S24-like	N/A
Pfam	UHGV-0012500_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012500_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0012500_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0012500_3	K07741	125.1	1.3e-36	antB; anti-repressor protein	N/A
PHROG	UHGV-0012500_3	phrog_130	247.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0012500_3	UniRef90_UPI000E3CDD67	383.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0012500_3	1504822.CCNO01000015_gene589	305.0	0	SOS response	N/A
Pfam	UHGV-0012500_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0012500_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0012500_3	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0012500_3	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012500_5	UniRef90_A0A7X9UC10	77.8	7.44e-17	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0012500_5	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0012500_5	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0012500_5	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0012500_7	K01160	44.3	0.0000000000041	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0012500_7	phrog_140	70.1	3.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012500_7	UniRef90_A0A858B2Q7	97.1	1.69e-22	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0012500_7	1504822.CCNO01000013_gene309	81.3	1.36e-17	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0012500_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0012500_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0012500_7	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_8	phrog_34396	149.9	1.4013e-44	N/A	unknown function
UniRef90	UHGV-0012500_8	UniRef90_UPI00083869CF	128.0	7.98e-31	N/A	N/A
Pfam	UHGV-0012500_8	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0012500_8	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_9	phrog_2760	169.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012500_9	UniRef90_UPI0012AC218C	335.0	0	phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0012500_9	469378.Ccur_02960	232.0	0	RecT family	N/A
Pfam	UHGV-0012500_9	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0012500_9	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0012500_9	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0012500_9	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
dbAPIS	UHGV-0012500_11	APIS040	N/A	N/A	N/A	N/A
KOfam	UHGV-0012500_12	K03111	150.3	1.68156e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0012500_12	phrog_44	139.7	1.6e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012500_12	UniRef90_A0A7S7MA64	204.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0012500_12	1504822.CCNO01000008_gene2043	191.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0012500_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0012500_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0012500_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0012500_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0012500_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_17	phrog_21525	42.9	0.0000000000056	N/A	unknown function
structural_annotation	UHGV-0012500_22	PF14297,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0012500_24	K06909	265.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012500_24	phrog_5653	92.6	2.8e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0012500_24	UniRef90_UPI0012AC13A0	1136.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0012500_24	1111121.HMPREF1247_0840	527.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0012500_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0012500_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0012500_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0012500_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_25	phrog_533	224.4	0	portal protein	head and packaging
UniRef90	UHGV-0012500_25	UniRef90_UPI000DF7AA34	253.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0012500_25	1111121.HMPREF1247_0841	498.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0012500_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_26	phrog_581	219.4	0	minor head protein	head and packaging
UniRef90	UHGV-0012500_26	UniRef90_UPI0003ADCFD0	292.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0012500_26	1111121.HMPREF1247_0842	292.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0012500_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0012500_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012500_26	PF06152,PF15542	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012500_28	1111121.HMPREF1247_0843	111.0	1.77e-28	N/A	N/A
PHROG	UHGV-0012500_29	phrog_212	167.4	0	major head protein	head and packaging
UniRef90	UHGV-0012500_29	UniRef90_A0A6L9EQP3	166.0	1.4013e-45	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0012500_29	1294142.CINTURNW_1029	169.0	0	N/A	N/A
structural_annotation	UHGV-0012500_29	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_30	phrog_541	47.3	0.00000000000025	head-tail adaptor	connector
eggNOG-mapper	UHGV-0012500_30	445975.COLSTE_01109	53.9	0.0000000883	N/A	N/A
structural_annotation	UHGV-0012500_31	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_32	phrog_556	59.3	5.3e-17	minor head protein	head and packaging
UniRef90	UHGV-0012500_32	UniRef90_UPI0012AB3B47	248.0	0	minor capsid protein	N/A
Pfam	UHGV-0012500_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0012500_32	PF11114,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012500_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_36	phrog_706	45.9	0.00000000000052	N/A	unknown function
UniRef90	UHGV-0012500_36	UniRef90_UPI0016518D49	384.0	0	Gp15 family bacteriophage protein	N/A
Pfam	UHGV-0012500_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0012500_36	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_37	phrog_58	165.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0012500_37	UniRef90_UPI0012AB839F	915.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0012500_37	1273103.NM10_06751	174.0	1.07998e-41	tape measure	N/A
Pfam	UHGV-0012500_37	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0012500_37	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0012500_37	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0012500_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_38	phrog_33	41.6	0.000000000023	distal tail protein Dit	tail
UniRef90	UHGV-0012500_38	UniRef90_A0A415MTE8	98.2	2.04e-20	Phage tail protein	N/A
eggNOG-mapper	UHGV-0012500_38	1111121.HMPREF1247_0852	251.0	0	N/A	N/A
structural_annotation	UHGV-0012500_38	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_39	phrog_538	173.4	0	minor tail protein	tail
UniRef90	UHGV-0012500_39	UniRef90_UPI001F511E3F	273.0	0	head fiber protein	N/A
eggNOG-mapper	UHGV-0012500_39	1111121.HMPREF1247_0853	266.0	0	N/A	N/A
Pfam	UHGV-0012500_39	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0012500_39	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0012500_41	phrog_13141	165.0	0	N/A	unknown function
UniRef90	UHGV-0012500_41	UniRef90_A0A087E4D0	146.0	3.16e-40	Phage-related putative tail protein	N/A
eggNOG-mapper	UHGV-0012500_41	78345.BMERY_0866	116.0	3.02e-29	N/A	N/A
structural_annotation	UHGV-0012500_41	PF20747	N/A	N/A	N/A	N/A