UHGV-0012963 (vOTU-000530)

Viral Genome: UHGV-0012963

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0012963
vOTU ID	vOTU-000530
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_C-REDO_A_9_1509__NODE_827_length_42051_cov_11.755873
Associated BioSample	SAMEA4765801
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.73
Jumbo phage	No

Genome content
Genome length (bp)	41,974
GC content	46.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	94%
Average CDS length (bps)	733.61
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0012963_2	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_4	K00558	265.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0012963_4	phrog_116	301.2	0	DNA methyltransferase	other
UniRef90	UHGV-0012963_4	UniRef90_A0A1Q6RAH0	749.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0012963_4	203119.Cthe_1728	373.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0012963_4	MTase_II_00058	215.9	0	Type II methyltransferase	RM
Pfam	UHGV-0012963_4	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0012963_4	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0012963_4	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0012963_4	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_6	phrog_1672	48.2	0.0000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0012963_6	665959.HMPREF1013_00860	52.4	0.00000456	N/A	N/A
PHROG	UHGV-0012963_9	phrog_3584	202.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0012963_9	642492.Clole_0725	169.0	0	N/A	N/A
structural_annotation	UHGV-0012963_9	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_11	K07474	88.2	2.2e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0012963_11	phrog_51	79.3	4.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0012963_11	UniRef90_A0A8B2QP55	97.1	4.52e-23	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0012963_11	1160721.RBI_II00483	70.9	0.000000000000156	DNA packaging	N/A
Pfam	UHGV-0012963_11	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0012963_11	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0012963_11	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_12	K06909	51.1	0.00000000000002	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012963_12	phrog_5902	249.2	0	N/A	unknown function
UniRef90	UHGV-0012963_12	UniRef90_UPI0018C4A0E6	573.0	0	terminase	N/A
eggNOG-mapper	UHGV-0012963_12	1200557.JHWV01000001_gene277	566.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0012963_12	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0012963_12	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_14	phrog_332	416.8	0	head-tail adaptor	connector
UniRef90	UHGV-0012963_14	UniRef90_A0A8B2QMC7	670.0	0	Head-to-tail connecting protein	N/A
eggNOG-mapper	UHGV-0012963_14	585503.HMPREF7545_1733	560.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0012963_14	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0012963_14	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_16	phrog_458	82.7	5.7e-24	protease	other
UniRef90	UHGV-0012963_16	UniRef90_A0A6J5NV41	76.3	0.000000000000186	Putative protease	N/A
eggNOG-mapper	UHGV-0012963_16	585503.HMPREF7545_1735	145.0	7.69005e-41	N/A	N/A
PHROG	UHGV-0012963_17	phrog_212	103.3	0	major head protein	head and packaging
UniRef90	UHGV-0012963_17	UniRef90_A0A0U1KVA9	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012963_17	585503.HMPREF7545_1736	387.0	0	N/A	N/A
Pfam	UHGV-0012963_17	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0012963_17	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012963_18	585503.HMPREF7545_1737	113.0	1.21e-30	N/A	N/A
structural_annotation	UHGV-0012963_18	PF21190,NF033675	N/A	N/A	N/A	N/A
Pfam	UHGV-0012963_19	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0012963_19	PF12949	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_20	phrog_394	171.2	0	tail protein	tail
UniRef90	UHGV-0012963_20	UniRef90_A0A8B2QU77	227.0	0	Tail tube protein	N/A
eggNOG-mapper	UHGV-0012963_20	585503.HMPREF7545_1739	173.0	0	N/A	N/A
structural_annotation	UHGV-0012963_20	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_21	phrog_376	515.3	0	tail protein	tail
UniRef90	UHGV-0012963_21	UniRef90_A0A0U1KV93	417.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012963_21	585503.HMPREF7545_1740	643.0	0	N/A	N/A
structural_annotation	UHGV-0012963_21	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_22	phrog_308	87.7	1.4e-25	internal virion protein	head and packaging
UniRef90	UHGV-0012963_22	UniRef90_UPI0009E1953E	74.3	0.000000000000217	N/A	N/A
eggNOG-mapper	UHGV-0012963_22	585503.HMPREF7545_1741	114.0	2.5e-30	N/A	N/A
structural_annotation	UHGV-0012963_22	PF11039,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_23	phrog_418	54.6	0.0000000000000018	internal virion protein	head and packaging
structural_annotation	UHGV-0012963_23	TIGR02971	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012963_24	UniRef90_A0A1B3X2T2	178.0	9.24857e-44	NlpC/P60 domain-containing protein	N/A
structural_annotation	UHGV-0012963_24	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_25	phrog_9880	391.2	0	N/A	unknown function
UniRef90	UHGV-0012963_25	UniRef90_A0A239Z8B8	679.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012963_25	568816.Acin_1824	748.0	0	N/A	N/A
PHROG	UHGV-0012963_26	phrog_1640	73.6	8.3e-22	tail protein	tail
eggNOG-mapper	UHGV-0012963_26	343516.Q286Z3_9CAUD	65.9	0.0000000261	outer membrane	N/A
structural_annotation	UHGV-0012963_26	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_29	phrog_1141	64.4	1.7e-18	tail fiber protein	tail
UniRef90	UHGV-0012963_29	UniRef90_A0A3C1IQ26	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012963_29	1217710.F969_02498	56.6	0.000000118	N/A	N/A
Pfam	UHGV-0012963_29	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0012963_29	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0012963_30	phrog_4105	82.3	4.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0012963_30	33035.JPJF01000043_gene996	74.3	0.00000000000000139	N/A	N/A
PHROG	UHGV-0012963_32	phrog_918	102.0	2.7e-30	N/A	unknown function
UniRef90	UHGV-0012963_32	UniRef90_UPI000EC62F11	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012963_32	537007.BLAHAN_05515	143.0	9.3887e-44	N/A	N/A
Pfam	UHGV-0012963_32	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0012963_32	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012963_33	1392502.JNIO01000008_gene1280	226.0	0	N/A	N/A
structural_annotation	UHGV-0012963_33	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012963_36	UniRef90_A0A316S6W0	91.3	1.62e-22	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0012963_36	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0012963_36	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0012963_36	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012963_41	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012963_42	UniRef90_A0A7M1RS47	90.5	2.94e-20	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0012963_42	1378168.N510_03079	62.4	0.00000000161	N/A	N/A
KOfam	UHGV-0012963_43	K06400	381.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0012963_43	phrog_95	367.7	0	integrase	integration and excision
UniRef90	UHGV-0012963_43	UniRef90_E8LBZ4	428.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0012963_43	626939.HMPREF9443_00357	428.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0012963_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0012963_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0012963_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0012963_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0012963_43	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_44	K07448	51.0	0.000000000000015	mrr; restriction system protein	N/A
UniRef90	UHGV-0012963_44	UniRef90_A0A644WFW5	297.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0012963_44	50960.LS81_07910	71.2	0.00000000000905	Restriction endonuclease	N/A
Pfam	UHGV-0012963_44	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
structural_annotation	UHGV-0012963_44	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_45	K18830	58.6	1.5e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0012963_45	phrog_8	57.6	3.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012963_45	UniRef90_B0N8N2	70.1	0.000000000000252	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0012963_45	445974.CLORAM_02966	70.1	0.0000000000000423	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0012963_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0012963_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0012963_45	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0012963_46	K18830	58.2	1.9e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0012963_46	phrog_2967	50.2	0.000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012963_46	UniRef90_R6X1Y8	149.0	4.62428e-44	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0012963_46	1414720.CBYM010000002_gene594	94.4	2.88e-23	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0012963_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012963_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0012963_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012963_49	PF13033	N/A	N/A	N/A	N/A
Pfam	UHGV-0012963_54	PF12957	N/A	N/A	N/A	DUF3846