UHGV-0012982 (vOTU-005493)

Viral Genome: UHGV-0012982

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0012982
vOTU ID	vOTU-005493
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_1225147__flag_0__multi_1432.3096__len_41613
Associated BioSample	SAMEA4765588
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.05
Jumbo phage	No

Genome content
Genome length (bp)	41,486
GC content	58.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	93%
Average CDS length (bps)	712.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0012982_1	phrog_3136	110.7	8.5e-33	N/A	unknown function
UniRef90	UHGV-0012982_1	UniRef90_A0A843H9M8	89.4	3.1e-19	ASCH domain-containing protein	N/A
UniRef90	UHGV-0012982_2	UniRef90_UPI001D064D4E	123.0	3.08e-33	N/A	N/A
Pfam	UHGV-0012982_2	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0012982_2	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_3	phrog_9298	62.1	7.6e-18	radical SAM domain protein	other
UniRef90	UHGV-0012982_3	UniRef90_D4C6F1	311.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012982_3	742738.HMPREF9460_03770	293.0	0	radical SAM domain protein	N/A
COG	UHGV-0012982_3	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0012982_3	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012982_7	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012982_8	NF041247	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_9	phrog_1468	57.3	1.1e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0012982_9	UniRef90_A0A1Y3RFS1	58.9	0.000000000604	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0012982_10	PF10548	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012982_14	UniRef90_UPI0018C81604	77.0	4.12e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0012982_14	484770.UFO1_1664	75.1	3.51e-17	N/A	N/A
structural_annotation	UHGV-0012982_14	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0012982_15	K22299	48.5	0.00000000000021	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0012982_15	phrog_8	52.2	0.0000000000000097	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012982_15	UniRef90_A0A1V9IMP1	63.2	0.00000000152	Cro/C1 family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0012982_15	1262914.BN533_01956	67.0	0.00000000000535	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0012982_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012982_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0012982_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0012982_16	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0012982_17	K14059	207.4	0	int; integrase	N/A
PHROG	UHGV-0012982_17	phrog_1	198.1	0	integrase	integration and excision
UniRef90	UHGV-0012982_17	UniRef90_A0A8F2JBJ7	256.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0012982_17	1507.HMPREF0262_00307	201.0	0	Phage integrase family	N/A
Pfam	UHGV-0012982_17	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0012982_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0012982_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0012982_17	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012982_18	UniRef90_A0A8F0WD75	75.5	0.0000000000000591	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0012982_18	1378168.N510_03079	68.6	0.0000000000105	N/A	N/A
structural_annotation	UHGV-0012982_19	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_20	phrog_16490	54.0	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0012982_20	641112.ACOK01000103_gene525	54.3	0.00000208	N/A	N/A
PHROG	UHGV-0012982_22	phrog_14030	139.7	1.79997e-41	N/A	unknown function
UniRef90	UHGV-0012982_22	UniRef90_R6LL81	242.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0012982_22	1121866.AUGK01000003_gene1444	95.5	7.87e-20	amidase activity	N/A
COG	UHGV-0012982_22	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0012982_23	phrog_6918	95.6	3.3e-28	holin	lysis
UniRef90	UHGV-0012982_23	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-0012982_23	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0012982_23	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0012982_23	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_29	phrog_37900	322.8	0	N/A	unknown function
UniRef90	UHGV-0012982_29	UniRef90_UPI001C3EA4DF	325.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012982_29	552398.HMPREF0866_03098	246.0	0	N/A	N/A
Pfam	UHGV-0012982_29	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0012982_29	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0012982_29	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0012982_30	K19721	203.4	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0012982_30	phrog_819	128.6	0	tail protein	tail
eggNOG-mapper	UHGV-0012982_30	1232443.BAIA02000078_gene14	84.0	0.0000000000000467	nuclear chromosome segregation	N/A
Pfam	UHGV-0012982_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0012982_30	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0012982_31	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_32	phrog_22978	126.6	4.40008e-43	N/A	unknown function
eggNOG-mapper	UHGV-0012982_32	1408437.JNJN01000039_gene389	482.0	0	heme binding	N/A
Pfam	UHGV-0012982_32	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-0012982_32	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-0012982_33	UniRef90_R5DCX9	188.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012982_33	1410650.JHWL01000003_gene2815	137.0	1.5e-33	N/A	N/A
PHROG	UHGV-0012982_34	phrog_12105	125.8	2.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0012982_34	1226322.HMPREF1545_03850	63.5	0.0000000000366	N/A	N/A
PHROG	UHGV-0012982_36	phrog_1357	214.8	0	major head protein	head and packaging
UniRef90	UHGV-0012982_36	UniRef90_A0A2V2CFL5	399.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0012982_36	1410650.JHWL01000003_gene2830	277.0	0	N/A	N/A
Pfam	UHGV-0012982_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0012982_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0012982_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_37	phrog_13908	149.9	1.54143e-44	N/A	unknown function
eggNOG-mapper	UHGV-0012982_37	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-0012982_38	phrog_156	292.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0012982_38	1410650.JHWL01000003_gene2833	536.0	0	N/A	N/A
structural_annotation	UHGV-0012982_38	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_40	phrog_37329	49.0	0.000000000000069	N/A	unknown function
Pfam	UHGV-0012982_40	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0012982_40	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0012982_40	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012982_41	537007.BLAHAN_05255	61.6	0.000000241	N/A	N/A
PHROG	UHGV-0012982_42	phrog_511	234.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0012982_42	1410650.JHWL01000003_gene2827	318.0	0	N/A	N/A
structural_annotation	UHGV-0012982_42	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0012982_43	K06909	152.3	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012982_43	phrog_979	137.5	5.09933e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0012982_43	UniRef90_A0A810Q5R0	650.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0012982_43	1410650.JHWL01000003_gene2834	619.0	0	N/A	N/A
Pfam	UHGV-0012982_43	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0012982_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0012982_43	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_44	phrog_606	68.9	8.1e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0012982_44	UniRef90_UPI001F487344	128.0	2.41e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0012982_44	397290.C810_05185	129.0	7e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-0012982_44	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0012982_44	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_45	phrog_3584	120.3	1.5e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0012982_45	642492.Clole_0725	64.7	0.00000000153	N/A	N/A
structural_annotation	UHGV-0012982_45	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_46	phrog_2245	89.8	2.9e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0012982_46	UniRef90_A0A4U9RLZ8	60.8	0.00000000353	N/A	N/A
eggNOG-mapper	UHGV-0012982_46	1567010.A0A0A7RU90_9VIRU	60.8	0.00000000163	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0012982_46	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0012982_48	phrog_374	56.5	5.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0012982_48	387344.LVIS_0713	68.6	0.00000000000133	N/A	N/A
PHROG	UHGV-0012982_50	phrog_190	102.1	5.6e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012982_50	UniRef90_UPI0006C2AC63	134.0	1.64e-37	N/A	N/A
eggNOG-mapper	UHGV-0012982_50	693746.OBV_25250	117.0	1.86e-31	N/A	N/A
Pfam	UHGV-0012982_50	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0012982_50	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012982_54	665956.HMPREF1032_03087	58.9	0.00000000622	N/A	N/A