UHGV-0013209 (vOTU-061997)

Viral Genome: UHGV-0013209

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013209
vOTU ID	vOTU-061997
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_2_1148__NODE_505_length_54846_cov_8.760448
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9719
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.82
Jumbo phage	No

Genome content
Genome length (bp)	54,826
GC content	37.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	89
CDS density	91%
Average CDS length (bps)	560.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013209_1	phrog_27197	124.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0013209_1	394503.Ccel_3068	61.6	0.00000000154	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0013209_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0013209_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_2	phrog_674	150.1	1.54143e-44	N/A	unknown function
UniRef90	UHGV-0013209_2	UniRef90_UPI001D08AD8A	90.9	1.58e-17	N/A	N/A
eggNOG-mapper	UHGV-0013209_2	1121441.AUCX01000014_gene537	90.1	5.39e-18	N/A	N/A
Pfam	UHGV-0013209_2	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0013209_2	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0013209_3	K07455	162.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0013209_3	phrog_148	166.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_3	UniRef90_A0A7G5N2X4	248.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0013209_3	1211844.CBLM010000016_gene1512	206.0	0	RecT family	N/A
Pfam	UHGV-0013209_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0013209_3	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0013209_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0013209_3	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0013209_4	K00571	106.9	2.6e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0013209_4	phrog_67	97.2	7e-30	DNA methyltransferase	other
UniRef90	UHGV-0013209_4	UniRef90_A0A2A5RI07	375.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0013209_4	35241.Q9XJE8_BPTU2	371.0	0	helicase activity	N/A
PADLOC	UHGV-0013209_4	MTase_II_00157	82.3	3.3e-25	Type II methyltransferase	RM
Pfam	UHGV-0013209_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0013209_4	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_10	phrog_8684	75.9	1.4e-24	N/A	unknown function
UniRef90	UHGV-0013209_10	UniRef90_A0A433CF39	85.9	1.16e-18	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0013209_10	1121097.JCM15093_2710	72.0	0.0000000000000477	YopX protein	N/A
Pfam	UHGV-0013209_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0013209_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0013209_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_11	phrog_335	97.5	1.4e-28	phosphatase	other
UniRef90	UHGV-0013209_11	UniRef90_UPI00067E78B7	115.0	5.45e-30	macro domain-containing protein	N/A
eggNOG-mapper	UHGV-0013209_11	1178540.BA70_09390	90.9	3.71e-21	Macro domain	N/A
PADLOC	UHGV-0013209_11	darG	62.6	1.2e-17	N/A	N/A
COG	UHGV-0013209_11	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0013209_11	PF20016,MF_01205,NF001666,COG2110	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_14	phrog_959	41.1	0.000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
KOfam	UHGV-0013209_17	K07317	53.6	0.0000000000000029	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0013209_17	phrog_11371	45.7	0.00000000000071	N/A	unknown function
UniRef90	UHGV-0013209_17	UniRef90_UPI000D938E34	122.0	5.36e-32	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0013209_17	582744.Msip34_2031	111.0	7.8e-29	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0013209_17	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
Pfam	UHGV-0013209_20	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0013209_21	K03111	135.9	4.39999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013209_21	phrog_44	129.9	1.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_21	UniRef90_R7FWV6	144.0	5.38939e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013209_21	1042163.BRLA_c046430	114.0	2.01e-30	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0013209_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013209_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013209_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013209_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
KOfam	UHGV-0013209_23	K00571	143.5	1.99965e-42	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0013209_23	phrog_67	137.0	5.29971e-42	DNA methyltransferase	other
UniRef90	UHGV-0013209_23	UniRef90_A0A3N4VUU2	305.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0013209_23	877240.E1AC06_9CAUD	137.0	2.7e-37	helicase activity	N/A
PADLOC	UHGV-0013209_23	MTase_II_00157	141.4	1.3999e-42	Type II methyltransferase	RM
Pfam	UHGV-0013209_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0013209_23	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_25	phrog_22444	77.4	1.5e-22	N/A	unknown function
UniRef90	UHGV-0013209_25	UniRef90_A0A5S3QIX1	166.0	1.4013e-45	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013209_25	1121422.AUMW01000042_gene1260	171.0	0	DnaD domain protein	N/A
COG	UHGV-0013209_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0013209_26	K02315	106.3	3.6e-31	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0013209_26	phrog_50	96.9	2.4e-28	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_26	UniRef90_A0A3D0LZW1	191.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0013209_26	428125.CLOLEP_01820	172.0	0	N/A	N/A
Pfam	UHGV-0013209_26	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0013209_26	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0013209_26	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013209_30	UniRef90_A0A349ETZ2	48.9	0.00000267	XRE family transcriptional regulator	N/A
Pfam	UHGV-0013209_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013209_30	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0013209_31	PF18892	N/A	N/A	N/A	N/A
KOfam	UHGV-0013209_35	K01160	49.5	0.00000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013209_35	phrog_34	51.5	0.000000000000019	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_35	UniRef90_A0A892AQS8	131.0	6.63e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0013209_35	561177.ANHYDRO_01396	107.0	3.36e-28	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0013209_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0013209_35	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013209_39	1378168.N510_03079	60.5	0.0000000259	N/A	N/A
structural_annotation	UHGV-0013209_40	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_41	phrog_16490	103.1	1.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0013209_41	445972.ANACOL_01880	89.4	1.08e-18	N/A	N/A
eggNOG-mapper	UHGV-0013209_52	411473.RUMCAL_00420	68.2	0.00000000225	nuclear chromosome segregation	N/A
COG	UHGV-0013209_52	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0013209_61	phrog_158	45.4	0.0000000000012	major tail protein	tail
PHROG	UHGV-0013209_66	phrog_29	170.2	0	major head protein	head and packaging
UniRef90	UHGV-0013209_66	UniRef90_A0A2K9P3U0	243.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0013209_66	1232443.BAIA02000078_gene29	234.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0013209_66	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0013209_66	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_69	phrog_64	126.6	1.5e-37	portal protein	head and packaging
UniRef90	UHGV-0013209_69	UniRef90_UPI001BAB50B9	179.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0013209_69	1121866.AUGK01000003_gene1429	142.0	8.5e-34	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0013209_69	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0013209_69	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_70	phrog_144	51.1	0.000000000000025	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_70	UniRef90_A0A3S0MUV3	52.0	0.00000262	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0013209_70	1237149.C900_03881	52.4	0.00000152	HNH nucleases	N/A
Pfam	UHGV-0013209_70	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0013209_73	phrog_38	106.2	2.9e-31	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-0013209_73	428127.EUBDOL_01551	129.0	5.15e-30	chromosome segregation	N/A
COG	UHGV-0013209_73	COG5410	N/A	N/A	N/A	N/A
Pfam	UHGV-0013209_75	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0013209_76	PF13742,MF_01959,NF009635,COG3390	N/A	N/A	N/A	N/A
KOfam	UHGV-0013209_85	K03466	221.3	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0013209_85	phrog_1358	187.9	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0013209_85	UniRef90_A0A2E8BVL4	165.0	3.92364e-44	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-0013209_85	765123.HMPREF9621_00103	167.0	1.27518e-43	Ftsk_gamma	N/A
PADLOC	UHGV-0013209_85	SspH_00002	104.1	8.1e-31	SspH	SSP
Pfam	UHGV-0013209_85	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0013209_85	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0013209_85	PF01580,PF17854,MF_01076,NF041214,COG0433	N/A	N/A	N/A	N/A
Pfam	UHGV-0013209_86	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0013209_87	phrog_434	117.9	1.1e-34	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013209_87	UniRef90_UPI001AA18B27	132.0	7.7e-35	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0013209_87	742740.HMPREF9474_03486	127.0	8.02e-34	YqaJ viral recombinase family	N/A
Pfam	UHGV-0013209_87	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0013209_87	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0013209_87	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0013209_87	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0013209_89	phrog_4433	184.4	0	N/A	unknown function
UniRef90	UHGV-0013209_89	UniRef90_A0A6M5C839	99.0	6.47e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0013209_89	1122971.BAME01000221_gene6790	110.0	1.99e-27	DNA-templated transcription, initiation	N/A
COG	UHGV-0013209_89	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0013209_89	NF000318	N/A	N/A	N/A	N/A